RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 TRMT10CQ7L0Y3 403 aaKnown RBP12.75□□□□□ -0.37
NUP54-202ENST00000502850 FBXO25Q8TCJ0 367 aa12.75□□□□□ -0.37
NUP54-202ENST00000502850 ART4Q93070 314 aa12.75□□□□□ -0.37
NUP54-202ENST00000502850 PGM2Q96G03 612 aa12.75□□□□□ -0.37
NUP54-202ENST00000502850 BTBD6Q96KE9 485 aa12.75□□□□□ -0.37
NUP54-202ENST00000502850 TCHPQ9BT92 498 aa12.75□□□□□ -0.37
NUP54-202ENST00000502850 TMEM109Q9BVC6 243 aa12.75□□□□□ -0.37
NUP54-202ENST00000502850 CCDC113Q9H0I3 377 aa12.75□□□□□ -0.37
NUP54-202ENST00000502850 IP6K2Q9UHH9 426 aa12.75□□□□□ -0.37
NUP54-202ENST00000502850 CEP83Q9Y592 693 aa12.75□□□□□ -0.37
NUP54-202ENST00000502850 PTPRJQ12913 1337 aa12.74□□□□□ -0.37
NUP54-202ENST00000502850 SPDYE5A6NIY4 337 aa12.74□□□□□ -0.37
NUP54-202ENST00000502850 MSCO60682 206 aa12.74□□□□□ -0.37
NUP54-202ENST00000502850 PAEPP09466 180 aa12.74□□□□□ -0.37
NUP54-202ENST00000502850 RARGP13631 454 aa12.74□□□□□ -0.37
NUP54-202ENST00000502850 ITIH2P19823 946 aa12.74□□□□□ -0.37
NUP54-202ENST00000502850 FLT3P36888 993 aa12.74□□□□□ -0.37
NUP54-202ENST00000502850 RPL21P46778 160 aaKnown RBP12.74□□□□□ -0.37
NUP54-202ENST00000502850 LMNB2Q03252 620 aa12.74□□□□□ -0.37
NUP54-202ENST00000502850 PPIL2Q13356 520 aa12.74□□□□□ -0.37
NUP54-202ENST00000502850 TRPC3Q13507 836 aa12.74□□□□□ -0.37
NUP54-202ENST00000502850 PTK6Q13882 451 aa12.74□□□□□ -0.37
NUP54-202ENST00000502850 BYSLQ13895 437 aaKnown RBP12.74□□□□□ -0.37
NUP54-202ENST00000502850 PTGISQ16647 500 aa12.74□□□□□ -0.37
NUP54-202ENST00000502850 SGSM1Q2NKQ1 1148 aa12.74□□□□□ -0.37
NUP54-202ENST00000502850 C6orf118Q5T5N4 469 aa12.74□□□□□ -0.37
NUP54-202ENST00000502850 PLEKHA7Q6IQ23 1121 aa12.74□□□□□ -0.37
NUP54-202ENST00000502850 AADACL2Q6P093 401 aa12.74□□□□□ -0.37
NUP54-202ENST00000502850 TTC27Q6P3X3 843 aa12.74□□□□□ -0.37
NUP54-202ENST00000502850 FASTKD5Q7L8L6 764 aaKnown RBP12.74□□□□□ -0.37
NUP54-202ENST00000502850 KATNAL2Q8IYT4 538 aa12.74□□□□□ -0.37
NUP54-202ENST00000502850 EXD1Q8NHP7 514 aa12.74□□□□□ -0.37
NUP54-202ENST00000502850 CCHCR1Q8TD31 782 aa12.74□□□□□ -0.37
NUP54-202ENST00000502850 PRPF31Q8WWY3 499 aaKnown RBP12.74□□□□□ -0.37
NUP54-202ENST00000502850 CPA5Q8WXQ8 436 aa12.74□□□□□ -0.37
NUP54-202ENST00000502850 RBM41Q96IZ5 413 aaKnown RBP12.74□□□□□ -0.37
NUP54-202ENST00000502850 GPR20Q99678 358 aa12.74□□□□□ -0.37
NUP54-202ENST00000502850 ACO2Q99798 780 aaKnown RBP12.74□□□□□ -0.37
NUP54-202ENST00000502850 PAGR1Q9BTK6 254 aa12.74□□□□□ -0.37
NUP54-202ENST00000502850 NIF3L1Q9GZT8 377 aa12.74□□□□□ -0.37
NUP54-202ENST00000502850 HAPLN2Q9GZV7 340 aa12.74□□□□□ -0.37
NUP54-202ENST00000502850 ASCC2Q9H1I8 757 aaPredicted RBP12.74□□□□□ -0.37
NUP54-202ENST00000502850 MROH8Q9H579 483 aa12.74□□□□□ -0.37
NUP54-202ENST00000502850 APOBEC3GQ9HC16 384 aaKnown RBP12.74□□□□□ -0.37
NUP54-202ENST00000502850 GGA2Q9UJY4 613 aa12.74□□□□□ -0.37
NUP54-202ENST00000502850 IGKV6-21A0A0C4DH24 114 aa12.73□□□□□ -0.37
NUP54-202ENST00000502850 MYO1CO00159 1063 aa12.73□□□□□ -0.37
NUP54-202ENST00000502850 CA12O43570 354 aa12.73□□□□□ -0.37
NUP54-202ENST00000502850 IL18RAPO95256 599 aa12.73□□□□□ -0.37
NUP54-202ENST00000502850 TNNC2P02585 160 aa12.73□□□□□ -0.37
NUP54-202ENST00000502850 HPDP32754 393 aaPredicted RBP12.73□□□□□ -0.37
NUP54-202ENST00000502850 CCT5P48643 541 aa12.73□□□□□ -0.37
NUP54-202ENST00000502850 ZNF157P51786 506 aaPredicted RBP12.73□□□□□ -0.37
NUP54-202ENST00000502850 LAMTOR4Q0VGL1 99 aa12.73□□□□□ -0.37
NUP54-202ENST00000502850 CELF3Q5SZQ8 465 aaKnown RBP12.73□□□□□ -0.37
NUP54-202ENST00000502850 MPZL3Q6UWV2 235 aa12.73□□□□□ -0.37
NUP54-202ENST00000502850 UBR7Q8N806 425 aa12.73□□□□□ -0.37
NUP54-202ENST00000502850 TMEM35BQ8NCS4 154 aa12.73□□□□□ -0.37
NUP54-202ENST00000502850 CYFIP2Q96F07 1278 aa12.73□□□□□ -0.37
NUP54-202ENST00000502850 SNF8Q96H20 258 aa12.73□□□□□ -0.37
NUP54-202ENST00000502850 ANKRD36BP1Q96IX9 119 aa12.73□□□□□ -0.37
NUP54-202ENST00000502850 ZBTB45Q96K62 511 aaPredicted RBP12.73□□□□□ -0.37
NUP54-202ENST00000502850 MMP19Q99542 508 aa12.73□□□□□ -0.37
NUP54-202ENST00000502850 C11orf70Q9BRQ4 267 aa12.73□□□□□ -0.37
NUP54-202ENST00000502850 SMARCAD1Q9H4L7 1026 aa12.73□□□□□ -0.37
NUP54-202ENST00000502850 BCCIPQ9P287 314 aaKnown RBP eCLIP12.73□□□□□ -0.37
NUP54-202ENST00000502850 KCNH4Q9UQ05 1017 aa12.73□□□□□ -0.37
NUP54-202ENST00000502850 UMODL1Q5DID0 1318 aa12.73□□□□□ -0.37
NUP54-202ENST00000502850 FAM155AB1AL88 458 aaPredicted RBP12.73□□□□□ -0.37
NUP54-202ENST00000502850 HBP1O60381 514 aa12.73□□□□□ -0.37
NUP54-202ENST00000502850 AGTP01019 485 aa12.73□□□□□ -0.37
NUP54-202ENST00000502850 TMEM191BP0C7N4 346 aa12.73□□□□□ -0.37
NUP54-202ENST00000502850 HARSP12081 509 aaKnown RBP12.73□□□□□ -0.37
NUP54-202ENST00000502850 ATP5DP30049 168 aa12.73□□□□□ -0.37
NUP54-202ENST00000502850 CORO7P57737 925 aa12.73□□□□□ -0.37
NUP54-202ENST00000502850 KRT17Q04695 432 aa12.73□□□□□ -0.37
NUP54-202ENST00000502850 KYAT1Q16773 422 aa12.73□□□□□ -0.37
NUP54-202ENST00000502850 LRRC38Q5VT99 294 aa12.73□□□□□ -0.37
NUP54-202ENST00000502850 SPOPLQ6IQ16 392 aa12.73□□□□□ -0.37
NUP54-202ENST00000502850 TSHZ1Q6ZSZ6 1077 aa12.73□□□□□ -0.37
NUP54-202ENST00000502850 CCDC50Q8IVM0 306 aa12.73□□□□□ -0.37
NUP54-202ENST00000502850 SHCBP1Q8NEM2 672 aa12.73□□□□□ -0.37
NUP54-202ENST00000502850 OR2W6PQ8NHA6 318 aa12.73□□□□□ -0.37
NUP54-202ENST00000502850 ATL2Q8NHH9 583 aa12.73□□□□□ -0.37
NUP54-202ENST00000502850 FEZF2Q8TBJ5 459 aa12.73□□□□□ -0.37
NUP54-202ENST00000502850 CENPTQ96BT3 561 aa12.73□□□□□ -0.37
NUP54-202ENST00000502850 TLCD1Q96CP7 247 aa12.73□□□□□ -0.37
NUP54-202ENST00000502850 OTUD5Q96G74 571 aa12.73□□□□□ -0.37
NUP54-202ENST00000502850 DDX27Q96GQ7 796 aaKnown RBP12.73□□□□□ -0.37
NUP54-202ENST00000502850 ZIC5Q96T25 663 aa12.73□□□□□ -0.37
NUP54-202ENST00000502850 NFKBIZQ9BYH8 718 aa12.73□□□□□ -0.37
NUP54-202ENST00000502850 FOXP3Q9BZS1 431 aa12.73□□□□□ -0.37
NUP54-202ENST00000502850 ROPN1BQ9BZX4 212 aaPredicted RBP12.73□□□□□ -0.37
NUP54-202ENST00000502850 ROPN1Q9HAT0 212 aaPredicted RBP12.73□□□□□ -0.37
NUP54-202ENST00000502850 ASIC3Q9UHC3 531 aa12.73□□□□□ -0.37
NUP54-202ENST00000502850 CHORDC1Q9UHD1 332 aaPredicted RBP12.73□□□□□ -0.37
NUP54-202ENST00000502850 SLC12A6Q9UHW9 1150 aa12.73□□□□□ -0.37
NUP54-202ENST00000502850 CPSF3Q9UKF6 684 aaKnown RBP12.73□□□□□ -0.37
NUP54-202ENST00000502850 STRIP2Q9ULQ0 834 aa12.73□□□□□ -0.37
NUP54-202ENST00000502850 NUB1Q9Y5A7 615 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms