RNA–Protein interactions for RNA: ENST00000497892.5

ERCC8-208, Transcript of ERCC excision repair 8, CSA ubiquitin ligase complex subunit, humanhuman

TSL 1 (best)

Gene ERCC8, Length 881 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC8-208ENST00000497892 LEXMQ3ZCV2 418 aa12.18□□□□□ -0.46
ERCC8-208ENST00000497892 EP400NLQ6ZTU2 488 aa12.18□□□□□ -0.46
ERCC8-208ENST00000497892 CBWD2Q8IUF1 395 aa12.18□□□□□ -0.46
ERCC8-208ENST00000497892 EFCAB13Q8IY85 973 aa12.18□□□□□ -0.46
ERCC8-208ENST00000497892 TMEM130Q8N3G9 435 aa12.18□□□□□ -0.46
ERCC8-208ENST00000497892 BEST2Q8NFU1 509 aa12.18□□□□□ -0.46
ERCC8-208ENST00000497892 TMEM174Q8WUU8 243 aa12.18□□□□□ -0.46
ERCC8-208ENST00000497892 RIN2Q8WYP3 895 aaPredicted RBP12.18□□□□□ -0.46
ERCC8-208ENST00000497892 PIK3R5Q8WYR1 880 aa12.18□□□□□ -0.46
ERCC8-208ENST00000497892 MSLNLQ96KJ4 702 aa12.18□□□□□ -0.46
ERCC8-208ENST00000497892 KLHL5Q96PQ7 755 aa12.18□□□□□ -0.46
ERCC8-208ENST00000497892 GSDMAQ96QA5 445 aa12.18□□□□□ -0.46
ERCC8-208ENST00000497892 TTPALQ9BTX7 342 aa12.18□□□□□ -0.46
ERCC8-208ENST00000497892 IL21Q9HBE4 155 aa12.18□□□□□ -0.46
ERCC8-208ENST00000497892 RXFP1Q9HBX9 757 aa12.18□□□□□ -0.46
ERCC8-208ENST00000497892 KIAA1586Q9HCI6 787 aa12.18□□□□□ -0.46
ERCC8-208ENST00000497892 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.18□□□□□ -0.46
ERCC8-208ENST00000497892 RMND1Q9NWS8 449 aa12.18□□□□□ -0.46
ERCC8-208ENST00000497892 BARX2Q9UMQ3 279 aaPredicted RBP12.18□□□□□ -0.46
ERCC8-208ENST00000497892 NUB1Q9Y5A7 615 aa12.18□□□□□ -0.46
ERCC8-208ENST00000497892 CUL9Q8IWT3 2517 aa12.17□□□□□ -0.46
ERCC8-208ENST00000497892 SCN1AP35498 2009 aa12.17□□□□□ -0.46
ERCC8-208ENST00000497892 ZNF233A6NK53 670 aa12.17□□□□□ -0.46
ERCC8-208ENST00000497892 I3L4J1 428 aa12.17□□□□□ -0.46
ERCC8-208ENST00000497892 PDXKO00764 312 aa12.17□□□□□ -0.46
ERCC8-208ENST00000497892 CLIC2O15247 247 aa12.17□□□□□ -0.46
ERCC8-208ENST00000497892 TEX28O15482 410 aa12.17□□□□□ -0.46
ERCC8-208ENST00000497892 KIF20AO95235 890 aa12.17□□□□□ -0.46
ERCC8-208ENST00000497892 SMC2O95347 1197 aa12.17□□□□□ -0.46
ERCC8-208ENST00000497892 ADH1AP07327 375 aa12.17□□□□□ -0.46
ERCC8-208ENST00000497892 BRCC3P46736 316 aa12.17□□□□□ -0.46
ERCC8-208ENST00000497892 AARSP49588 968 aaKnown RBP eCLIP12.17□□□□□ -0.46
ERCC8-208ENST00000497892 CYP2J2P51589 502 aa12.17□□□□□ -0.46
ERCC8-208ENST00000497892 GUCY2FP51841 1108 aa12.17□□□□□ -0.46
ERCC8-208ENST00000497892 SNRNP35Q16560 246 aaKnown RBP12.17□□□□□ -0.46
ERCC8-208ENST00000497892 LLGL2Q6P1M3 1020 aa12.17□□□□□ -0.46
ERCC8-208ENST00000497892 PDXDC1Q6P996 788 aa12.17□□□□□ -0.46
ERCC8-208ENST00000497892 PRSS55Q6UWB4 352 aaPredicted RBP12.17□□□□□ -0.46
ERCC8-208ENST00000497892 PPFIBP1Q86W92 1011 aa12.17□□□□□ -0.46
ERCC8-208ENST00000497892 GUF1Q8N442 669 aaKnown RBP12.17□□□□□ -0.46
ERCC8-208ENST00000497892 XXYLT1Q8NBI6 393 aa12.17□□□□□ -0.46
ERCC8-208ENST00000497892 NOC3LQ8WTT2 800 aaKnown RBP12.17□□□□□ -0.46
ERCC8-208ENST00000497892 SLC22A17Q8WUG5 538 aa12.17□□□□□ -0.46
ERCC8-208ENST00000497892 CASP10Q92851 521 aa12.17□□□□□ -0.46
ERCC8-208ENST00000497892 SUSD3Q96L08 255 aa12.17□□□□□ -0.46
ERCC8-208ENST00000497892 FNIP2Q9P278 1114 aa12.17□□□□□ -0.46
ERCC8-208ENST00000497892 PCDHA5Q9Y5H7 936 aa12.17□□□□□ -0.46
ERCC8-208ENST00000497892 NCOR1O75376 2440 aa12.17□□□□□ -0.46
ERCC8-208ENST00000497892 ANO9A1A5B4 782 aa12.16□□□□□ -0.46
ERCC8-208ENST00000497892 PIRO00625 290 aa12.16□□□□□ -0.46
ERCC8-208ENST00000497892 PPEF2O14830 753 aa12.16□□□□□ -0.46
ERCC8-208ENST00000497892 SYN3O14994 580 aa12.16□□□□□ -0.46
ERCC8-208ENST00000497892 PRPF40AO75400 957 aaKnown RBP12.16□□□□□ -0.46
ERCC8-208ENST00000497892 EPCAMP16422 314 aa12.16□□□□□ -0.46
ERCC8-208ENST00000497892 KLRC2P26717 231 aa12.16□□□□□ -0.46
ERCC8-208ENST00000497892 TKTP29401 623 aaKnown RBP12.16□□□□□ -0.46
ERCC8-208ENST00000497892 MCM4P33991 863 aa12.16□□□□□ -0.46
ERCC8-208ENST00000497892 CLCN4P51793 760 aa12.16□□□□□ -0.46
ERCC8-208ENST00000497892 SURF1Q15526 300 aa12.16□□□□□ -0.46
ERCC8-208ENST00000497892 PSMD5Q16401 504 aa12.16□□□□□ -0.46
ERCC8-208ENST00000497892 C9orf57Q5W0N0 161 aa12.16□□□□□ -0.46
ERCC8-208ENST00000497892 CEP57Q86XR8 500 aa12.16□□□□□ -0.46
ERCC8-208ENST00000497892 SLC9A9Q8IVB4 645 aa12.16□□□□□ -0.46
ERCC8-208ENST00000497892 SMRP1Q8NCR6 262 aa12.16□□□□□ -0.46
ERCC8-208ENST00000497892 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.16□□□□□ -0.46
ERCC8-208ENST00000497892 LNX1Q8TBB1 728 aaPredicted RBP12.16□□□□□ -0.46
ERCC8-208ENST00000497892 ERCC4Q92889 916 aaPredicted RBP12.16□□□□□ -0.46
ERCC8-208ENST00000497892 SMARCE1Q969G3 411 aa12.16□□□□□ -0.46
ERCC8-208ENST00000497892 PDE11AQ9HCR9 933 aa12.16□□□□□ -0.46
ERCC8-208ENST00000497892 DZANK1Q9NVP4 752 aa12.16□□□□□ -0.46
ERCC8-208ENST00000497892 DPP3Q9NY33 737 aa12.16□□□□□ -0.46
ERCC8-208ENST00000497892 CD207Q9UJ71 328 aa12.16□□□□□ -0.46
ERCC8-208ENST00000497892 MAPK8IP1Q9UQF2 711 aa12.16□□□□□ -0.46
ERCC8-208ENST00000497892 TRAF3IP3Q9Y228 551 aa12.16□□□□□ -0.46
ERCC8-208ENST00000497892 MTCL1Q9Y4B5 1905 aaKnown RBP12.15□□□□□ -0.46
ERCC8-208ENST00000497892 PTPRJQ12913 1337 aa12.15□□□□□ -0.46
ERCC8-208ENST00000497892 M0QZQ0 153 aa12.15□□□□□ -0.46
ERCC8-208ENST00000497892 EXOC3O60645 756 aa12.15□□□□□ -0.46
ERCC8-208ENST00000497892 C1RP00736 705 aa12.15□□□□□ -0.46
ERCC8-208ENST00000497892 NR3C1P04150 777 aa12.15□□□□□ -0.46
ERCC8-208ENST00000497892 BMP1P13497 986 aa12.15□□□□□ -0.46
ERCC8-208ENST00000497892 RPL17P18621 184 aaKnown RBP12.15□□□□□ -0.46
ERCC8-208ENST00000497892 PAX3P23760 479 aa12.15□□□□□ -0.46
ERCC8-208ENST00000497892 TFAMQ00059 246 aaKnown RBP12.15□□□□□ -0.46
ERCC8-208ENST00000497892 CYP24A1Q07973 514 aa12.15□□□□□ -0.46
ERCC8-208ENST00000497892 SMAD4Q13485 552 aaKnown RBP12.15□□□□□ -0.46
ERCC8-208ENST00000497892 MYBPC2Q14324 1141 aa12.15□□□□□ -0.46
ERCC8-208ENST00000497892 PSMD6Q15008 389 aa12.15□□□□□ -0.46
ERCC8-208ENST00000497892 NFIL3Q16649 462 aa12.15□□□□□ -0.46
ERCC8-208ENST00000497892 PUS10Q3MIT2 529 aaKnown RBP12.15□□□□□ -0.46
ERCC8-208ENST00000497892 ZCWPW2Q504Y3 356 aa12.15□□□□□ -0.46
ERCC8-208ENST00000497892 COBLL1Q53SF7 1204 aa12.15□□□□□ -0.46
ERCC8-208ENST00000497892 ZNF658Q5TYW1 1059 aaPredicted RBP12.15□□□□□ -0.46
ERCC8-208ENST00000497892 PTCRAQ6ISU1 281 aaPredicted RBP12.15□□□□□ -0.46
ERCC8-208ENST00000497892 ANKRD54Q6NXT1 300 aa12.15□□□□□ -0.46
ERCC8-208ENST00000497892 ANKS3Q6ZW76 656 aa12.15□□□□□ -0.46
ERCC8-208ENST00000497892 WDR49Q8IV35 697 aa12.15□□□□□ -0.46
ERCC8-208ENST00000497892 SMYD4Q8IYR2 804 aaPredicted RBP12.15□□□□□ -0.46
ERCC8-208ENST00000497892 GTPBP4Q9BZE4 634 aaKnown RBP12.15□□□□□ -0.46
ERCC8-208ENST00000497892 DMAC2Q9NW81 257 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 169.7 ms