RNA–Protein interactions for RNA: ENST00000495528.1

VIM-207, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 962 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-207ENST00000495528 TTC1Q99614 292 aa7.74□□□□□ -1.17
VIM-207ENST00000495528 SPATA25Q9BR10 227 aa7.74□□□□□ -1.17
VIM-207ENST00000495528 AMNQ9BXJ7 453 aa7.74□□□□□ -1.17
VIM-207ENST00000495528 C11orf49Q9H6J7 331 aa7.74□□□□□ -1.17
VIM-207ENST00000495528 HDAC5Q9UQL6 1122 aa7.74□□□□□ -1.17
VIM-207ENST00000495528 ASB1Q9Y576 335 aa7.74□□□□□ -1.17
VIM-207ENST00000495528 ANKRD62A6NC57 917 aa7.73□□□□□ -1.17
VIM-207ENST00000495528 GOLGA6L22H0YM25 854 aa7.73□□□□□ -1.17
VIM-207ENST00000495528 IPO8O15397 1037 aaKnown RBP7.73□□□□□ -1.17
VIM-207ENST00000495528 TGM5O43548 720 aa7.73□□□□□ -1.17
VIM-207ENST00000495528 CYP7B1O75881 506 aa7.73□□□□□ -1.17
VIM-207ENST00000495528 MAP4K4O95819 1239 aaPredicted RBP7.73□□□□□ -1.17
VIM-207ENST00000495528 MPIG6BO95866 241 aa7.73□□□□□ -1.17
VIM-207ENST00000495528 CYP17A1P05093 508 aa7.73□□□□□ -1.17
VIM-207ENST00000495528 ZSCAN22P10073 491 aaPredicted RBP7.73□□□□□ -1.17
VIM-207ENST00000495528 RPL13P26373 211 aaKnown RBP7.73□□□□□ -1.17
VIM-207ENST00000495528 LSSP48449 732 aa7.73□□□□□ -1.17
VIM-207ENST00000495528 GSTO1P78417 241 aa7.73□□□□□ -1.17
VIM-207ENST00000495528 OCRLQ01968 901 aa7.73□□□□□ -1.17
VIM-207ENST00000495528 PRR31Q5SQ13 230 aa7.73□□□□□ -1.17
VIM-207ENST00000495528 MCTP2Q6DN12 878 aa7.73□□□□□ -1.17
VIM-207ENST00000495528 ESRP1Q6NXG1 681 aaKnown RBP7.73□□□□□ -1.17
VIM-207ENST00000495528 Q7L0L9 218 aa7.73□□□□□ -1.17
VIM-207ENST00000495528 PASD1Q8IV76 773 aa7.73□□□□□ -1.17
VIM-207ENST00000495528 CARFQ8N187 725 aa7.73□□□□□ -1.17
VIM-207ENST00000495528 AFAP1L2Q8N4X5 818 aa7.73□□□□□ -1.17
VIM-207ENST00000495528 EFHBQ8N7U6 833 aa7.73□□□□□ -1.17
VIM-207ENST00000495528 WDR48Q8TAF3 677 aa7.73□□□□□ -1.17
VIM-207ENST00000495528 SH3RF3Q8TEJ3 882 aaPredicted RBP7.73□□□□□ -1.17
VIM-207ENST00000495528 P2RX7Q99572 595 aaKnown RBP7.73□□□□□ -1.17
VIM-207ENST00000495528 API5Q9BZZ5 524 aaKnown RBP7.73□□□□□ -1.17
VIM-207ENST00000495528 IFT22Q9H7X7 185 aa7.73□□□□□ -1.17
VIM-207ENST00000495528 L2HGDHQ9H9P8 463 aa7.73□□□□□ -1.17
VIM-207ENST00000495528 GALNT8Q9NY28 637 aa7.73□□□□□ -1.17
VIM-207ENST00000495528 RAI14Q9P0K7 980 aa7.73□□□□□ -1.17
VIM-207ENST00000495528 MORF4L1Q9UBU8 362 aa7.73□□□□□ -1.17
VIM-207ENST00000495528 OGDHLQ9ULD0 1010 aa7.73□□□□□ -1.17
VIM-207ENST00000495528 TNNQ9UQP3 1299 aa7.73□□□□□ -1.17
VIM-207ENST00000495528 DOCK3Q8IZD9 2030 aa7.73□□□□□ -1.17
VIM-207ENST00000495528 MGAMO43451 1857 aa7.72□□□□□ -1.17
VIM-207ENST00000495528 SH3D21A4FU49 640 aa7.72□□□□□ -1.17
VIM-207ENST00000495528 HOXA7P31268 230 aaPredicted RBP7.72□□□□□ -1.17
VIM-207ENST00000495528 MCAMP43121 646 aa7.72□□□□□ -1.17
VIM-207ENST00000495528 MAGEA10P43363 369 aaPredicted RBP7.72□□□□□ -1.17
VIM-207ENST00000495528 FNTBP49356 437 aa7.72□□□□□ -1.17
VIM-207ENST00000495528 RRP1P56182 461 aaKnown RBP7.72□□□□□ -1.17
VIM-207ENST00000495528 BACE1P56817 501 aa7.72□□□□□ -1.17
VIM-207ENST00000495528 MTX1Q13505 466 aa7.72□□□□□ -1.17
VIM-207ENST00000495528 SMAD2Q15796 467 aaKnown RBP7.72□□□□□ -1.17
VIM-207ENST00000495528 SHROOM1Q2M3G4 852 aaPredicted RBP7.72□□□□□ -1.17
VIM-207ENST00000495528 LRIT3Q3SXY7 679 aa7.72□□□□□ -1.17
VIM-207ENST00000495528 ATP13A4Q4VNC1 1196 aa7.72□□□□□ -1.17
VIM-207ENST00000495528 GORABQ5T7V8 394 aa7.72□□□□□ -1.17
VIM-207ENST00000495528 MAP3K21Q5TCX8 1036 aa7.72□□□□□ -1.17
VIM-207ENST00000495528 C20orf194Q5TEA3 1177 aa7.72□□□□□ -1.17
VIM-207ENST00000495528 ZKSCAN2Q63HK3 967 aa7.72□□□□□ -1.17
VIM-207ENST00000495528 TEX11Q8IYF3 940 aa7.72□□□□□ -1.17
VIM-207ENST00000495528 DEFB123Q8N688 67 aa7.72□□□□□ -1.17
VIM-207ENST00000495528 ZCCHC14Q8WYQ9 949 aaKnown RBP7.72□□□□□ -1.17
VIM-207ENST00000495528 FOXRED1Q96CU9 486 aaPredicted RBP7.72□□□□□ -1.17
VIM-207ENST00000495528 MS4A5Q9H3V2 200 aa7.72□□□□□ -1.17
VIM-207ENST00000495528 AS3MTQ9HBK9 375 aa7.72□□□□□ -1.17
VIM-207ENST00000495528 TXNRD2Q9NNW7 524 aa7.72□□□□□ -1.17
VIM-207ENST00000495528 EMC7Q9NPA0 242 aa7.72□□□□□ -1.17
VIM-207ENST00000495528 PI4KBQ9UBF8 816 aa7.72□□□□□ -1.17
VIM-207ENST00000495528 HERC5Q9UII4 1024 aaKnown RBP7.72□□□□□ -1.17
VIM-207ENST00000495528 MYH2Q9UKX2 1941 aa7.72□□□□□ -1.17
VIM-207ENST00000495528 LCHNA4D1U4 455 aa7.71□□□□□ -1.18
VIM-207ENST00000495528 GNAI3P08754 354 aa7.71□□□□□ -1.18
VIM-207ENST00000495528 ZNF28P17035 718 aa7.71□□□□□ -1.18
VIM-207ENST00000495528 BPIP17213 487 aa7.71□□□□□ -1.18
VIM-207ENST00000495528 ADCY8P40145 1251 aa7.71□□□□□ -1.18
VIM-207ENST00000495528 SLURP1P55000 103 aa7.71□□□□□ -1.18
VIM-207ENST00000495528 IRX3P78415 501 aaPredicted RBP7.71□□□□□ -1.18
VIM-207ENST00000495528 IL13RA1P78552 427 aa7.71□□□□□ -1.18
VIM-207ENST00000495528 SLC6A3Q01959 620 aa7.71□□□□□ -1.18
VIM-207ENST00000495528 CCL14Q16627 93 aa7.71□□□□□ -1.18
VIM-207ENST00000495528 ATF7IPQ6VMQ6 1270 aa7.71□□□□□ -1.18
VIM-207ENST00000495528 LCNL1Q6ZST4 164 aa7.71□□□□□ -1.18
VIM-207ENST00000495528 RTN4RL1Q86UN2 441 aaPredicted RBP7.71□□□□□ -1.18
VIM-207ENST00000495528 FOXP4Q8IVH2 680 aaPredicted RBP7.71□□□□□ -1.18
VIM-207ENST00000495528 TDHQ8IZJ6 230 aa7.71□□□□□ -1.18
VIM-207ENST00000495528 GPRC5AQ8NFJ5 357 aa7.71□□□□□ -1.18
VIM-207ENST00000495528 ATL2Q8NHH9 583 aa7.71□□□□□ -1.18
VIM-207ENST00000495528 TGFBRAP1Q8WUH2 860 aa7.71□□□□□ -1.18
VIM-207ENST00000495528 ARHGAP45Q92619 1136 aa7.71□□□□□ -1.18
VIM-207ENST00000495528 USP6NLQ92738 828 aa7.71□□□□□ -1.18
VIM-207ENST00000495528 C16orf92Q96LL3 132 aa7.71□□□□□ -1.18
VIM-207ENST00000495528 TUBGCP5Q96RT8 1024 aa7.71□□□□□ -1.18
VIM-207ENST00000495528 DHX36Q9H2U1 1008 aaKnown RBP7.71□□□□□ -1.18
VIM-207ENST00000495528 DNAJC18Q9H819 358 aa7.71□□□□□ -1.18
VIM-207ENST00000495528 KCND1Q9NSA2 647 aa7.71□□□□□ -1.18
VIM-207ENST00000495528 AATFQ9NY61 560 aaKnown RBP eCLIP7.71□□□□□ -1.18
VIM-207ENST00000495528 TMOD4Q9NZQ9 345 aa7.71□□□□□ -1.18
VIM-207ENST00000495528 PFASO15067 1338 aa7.71□□□□□ -1.18
VIM-207ENST00000495528 LAMA3Q16787 3333 aa7.71□□□□□ -1.18
VIM-207ENST00000495528 PHIPQ8WWQ0 1821 aa7.71□□□□□ -1.18
VIM-207ENST00000495528 MYH13Q9UKX3 1938 aa7.7□□□□□ -1.18
VIM-207ENST00000495528 COL2A1P02458 1487 aaPredicted RBP7.7□□□□□ -1.18
VIM-207ENST00000495528 PNMA6EA0A0J9YXQ4 647 aa7.7□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms