RNA–Protein interactions for RNA: ENST00000493455.6

HPS4-216, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 3

Gene HPS4, Length 986 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-216ENST00000493455 INTS2Q9H0H0 1204 aaKnown RBP16.94■□□□□ 0.3
HPS4-216ENST00000493455 ALG13Q9NP73 1137 aaKnown RBP16.94■□□□□ 0.3
HPS4-216ENST00000493455 SNX9Q9Y5X1 595 aa16.94■□□□□ 0.3
HPS4-216ENST00000493455 VWA8A3KMH1 1905 aa16.94■□□□□ 0.3
HPS4-216ENST00000493455 LGALS16A8MUM7 142 aa16.93■□□□□ 0.3
HPS4-216ENST00000493455 KPNA7A9QM74 516 aa16.93■□□□□ 0.3
HPS4-216ENST00000493455 TEX33O43247 280 aa16.93■□□□□ 0.3
HPS4-216ENST00000493455 FGF18O76093 207 aa16.93■□□□□ 0.3
HPS4-216ENST00000493455 SLC9A1P19634 815 aa16.93■□□□□ 0.3
HPS4-216ENST00000493455 PNPLA4P41247 253 aa16.93■□□□□ 0.3
HPS4-216ENST00000493455 LILRA4P59901 499 aa16.93■□□□□ 0.3
HPS4-216ENST00000493455 NOP14P78316 857 aaKnown RBP16.93■□□□□ 0.3
HPS4-216ENST00000493455 EXOC3L4Q17RC7 722 aa16.93■□□□□ 0.3
HPS4-216ENST00000493455 SGSM1Q2NKQ1 1148 aa16.93■□□□□ 0.3
HPS4-216ENST00000493455 WDR72Q3MJ13 1102 aa16.93■□□□□ 0.3
HPS4-216ENST00000493455 TIGD5Q53EQ6 642 aa16.93■□□□□ 0.3
HPS4-216ENST00000493455 ZNF667Q5HYK9 610 aa16.93■□□□□ 0.3
HPS4-216ENST00000493455 FUT10Q6P4F1 479 aa16.93■□□□□ 0.3
HPS4-216ENST00000493455 CD300LGQ6UXG3 332 aa16.93■□□□□ 0.3
HPS4-216ENST00000493455 APTXQ7Z2E3 356 aaKnown RBP16.93■□□□□ 0.3
HPS4-216ENST00000493455 LRRC52Q8N7C0 313 aa16.93■□□□□ 0.3
HPS4-216ENST00000493455 CXorf38Q8TB03 319 aa16.93■□□□□ 0.3
HPS4-216ENST00000493455 NAP1L5Q96NT1 182 aaPredicted RBP16.93■□□□□ 0.3
HPS4-216ENST00000493455 LSM14BQ9BX40 385 aaKnown RBP16.93■□□□□ 0.3
HPS4-216ENST00000493455 GPR62Q9BZJ7 368 aa16.93■□□□□ 0.3
HPS4-216ENST00000493455 TIMM13Q9Y5L4 95 aaPredicted RBP16.93■□□□□ 0.3
HPS4-216ENST00000493455 COL4A4P53420 1690 aaPredicted RBP16.93■□□□□ 0.3
HPS4-216ENST00000493455 TRIOBPQ9H2D6 2365 aa16.93■□□□□ 0.3
HPS4-216ENST00000493455 SF3B1O75533 1304 aaKnown RBP eCLIP16.93■□□□□ 0.3
HPS4-216ENST00000493455 TSC2P49815 1807 aa16.92■□□□□ 0.3
HPS4-216ENST00000493455 SOX1O00570 391 aaPredicted RBP16.92■□□□□ 0.3
HPS4-216ENST00000493455 C2CD2LO14523 706 aa16.92■□□□□ 0.3
HPS4-216ENST00000493455 CYB561D2O14569 222 aa16.92■□□□□ 0.3
HPS4-216ENST00000493455 P4HA2O15460 535 aa16.92■□□□□ 0.3
HPS4-216ENST00000493455 ATICP31939 592 aa16.92■□□□□ 0.3
HPS4-216ENST00000493455 RAP1GAPP47736 663 aa16.92■□□□□ 0.3
HPS4-216ENST00000493455 KLK7P49862 253 aa16.92■□□□□ 0.3
HPS4-216ENST00000493455 ERVK-21P61565 698 aa16.92■□□□□ 0.3
HPS4-216ENST00000493455 APBA1Q02410 837 aa16.92■□□□□ 0.3
HPS4-216ENST00000493455 KRT17Q04695 432 aa16.92■□□□□ 0.3
HPS4-216ENST00000493455 GPM6BQ13491 265 aa16.92■□□□□ 0.3
HPS4-216ENST00000493455 LRIT3Q3SXY7 679 aa16.92■□□□□ 0.3
HPS4-216ENST00000493455 FAM171A1Q5VUB5 890 aa16.92■□□□□ 0.3
HPS4-216ENST00000493455 EHBP1Q8NDI1 1231 aa16.92■□□□□ 0.3
HPS4-216ENST00000493455 GDPD5Q8WTR4 605 aa16.92■□□□□ 0.3
HPS4-216ENST00000493455 TATDN2Q93075 761 aa16.92■□□□□ 0.3
HPS4-216ENST00000493455 SENP8Q96LD8 212 aa16.92■□□□□ 0.3
HPS4-216ENST00000493455 TMEM189-UBE2V1I3L0A0 370 aa16.91■□□□□ 0.3
HPS4-216ENST00000493455 RFXAPO00287 272 aa16.91■□□□□ 0.3
HPS4-216ENST00000493455 TRAPPC3O43617 180 aa16.91■□□□□ 0.3
HPS4-216ENST00000493455 ASS1P00966 412 aaKnown RBP16.91■□□□□ 0.3
HPS4-216ENST00000493455 ODC1P11926 461 aa16.91■□□□□ 0.3
HPS4-216ENST00000493455 TKTP29401 623 aaKnown RBP16.91■□□□□ 0.3
HPS4-216ENST00000493455 MCCD1P59942 119 aaPredicted RBP16.91■□□□□ 0.3
HPS4-216ENST00000493455 SYCP1Q15431 976 aa16.91■□□□□ 0.3
HPS4-216ENST00000493455 KIAA1841Q6NSI8 718 aa16.91■□□□□ 0.3
HPS4-216ENST00000493455 TAS1R1Q7RTX1 841 aa16.91■□□□□ 0.3
HPS4-216ENST00000493455 PPM1KQ8N3J5 372 aa16.91■□□□□ 0.3
HPS4-216ENST00000493455 LRCH3Q96II8 777 aa16.91■□□□□ 0.3
HPS4-216ENST00000493455 SAMD11Q96NU1 681 aa16.91■□□□□ 0.3
HPS4-216ENST00000493455 NT5C1BQ96P26 610 aa16.91■□□□□ 0.3
HPS4-216ENST00000493455 C11orf84Q9BUA3 381 aaPredicted RBP16.91■□□□□ 0.3
HPS4-216ENST00000493455 VN1R3Q9BXE9 311 aa16.91■□□□□ 0.3
HPS4-216ENST00000493455 TRIM5Q9C035 493 aa16.91■□□□□ 0.3
HPS4-216ENST00000493455 XPO4Q9C0E2 1151 aaKnown RBP16.91■□□□□ 0.3
HPS4-216ENST00000493455 XYLT2Q9H1B5 865 aa16.91■□□□□ 0.3
HPS4-216ENST00000493455 APOBEC3GQ9HC16 384 aaKnown RBP16.91■□□□□ 0.3
HPS4-216ENST00000493455 RTN4Q9NQC3 1192 aaKnown RBP16.91■□□□□ 0.3
HPS4-216ENST00000493455 A0A1B0GTH6 734 aa16.9■□□□□ 0.3
HPS4-216ENST00000493455 CARNS1A5YM72 827 aa16.9■□□□□ 0.3
HPS4-216ENST00000493455 GOLGA6L3A6NEY3 463 aa16.9■□□□□ 0.3
HPS4-216ENST00000493455 CBFA2T2O43439 604 aa16.9■□□□□ 0.3
HPS4-216ENST00000493455 HUS1O60921 280 aa16.9■□□□□ 0.3
HPS4-216ENST00000493455 P4HA1P13674 534 aa16.9■□□□□ 0.3
HPS4-216ENST00000493455 CD58P19256 250 aa16.9■□□□□ 0.3
HPS4-216ENST00000493455 ELAVL2Q12926 359 aaKnown RBP16.9■□□□□ 0.3
HPS4-216ENST00000493455 GJB7Q6PEY0 223 aa16.9■□□□□ 0.3
HPS4-216ENST00000493455 TRIM65Q6PJ69 517 aa16.9■□□□□ 0.3
HPS4-216ENST00000493455 RRAGAQ7L523 313 aa16.9■□□□□ 0.3
HPS4-216ENST00000493455 ARHGEF19Q8IW93 802 aa16.9■□□□□ 0.3
HPS4-216ENST00000493455 VPS52Q8N1B4 723 aa16.9■□□□□ 0.3
HPS4-216ENST00000493455 APPL2Q8NEU8 664 aa16.9■□□□□ 0.3
HPS4-216ENST00000493455 AUTS2Q8WXX7 1259 aa16.9■□□□□ 0.3
HPS4-216ENST00000493455 SUSD3Q96L08 255 aa16.9■□□□□ 0.3
HPS4-216ENST00000493455 FAM161BQ96MY7 647 aa16.9■□□□□ 0.3
HPS4-216ENST00000493455 PLVAPQ9BX97 442 aa16.9■□□□□ 0.3
HPS4-216ENST00000493455 SMYD3Q9H7B4 428 aa16.9■□□□□ 0.3
HPS4-216ENST00000493455 ENTPD7Q9NQZ7 604 aa16.9■□□□□ 0.3
HPS4-216ENST00000493455 FAM207AQ9NSI2 230 aaPredicted RBP16.9■□□□□ 0.3
HPS4-216ENST00000493455 PUF60Q9UHX1 559 aaKnown RBP16.9■□□□□ 0.3
HPS4-216ENST00000493455 COQ4Q9Y3A0 265 aa16.9■□□□□ 0.3
HPS4-216ENST00000493455 EPOPA6NHQ4 379 aa16.89■□□□□ 0.29
HPS4-216ENST00000493455 LRRC10BA6NIK2 292 aa16.89■□□□□ 0.29
HPS4-216ENST00000493455 GRM6O15303 877 aa16.89■□□□□ 0.29
HPS4-216ENST00000493455 TPM3P06753 285 aa16.89■□□□□ 0.29
HPS4-216ENST00000493455 PON1P27169 355 aa16.89■□□□□ 0.29
HPS4-216ENST00000493455 KCNMA1Q12791 1236 aa16.89■□□□□ 0.29
HPS4-216ENST00000493455 WSCD1Q658N2 575 aa16.89■□□□□ 0.29
HPS4-216ENST00000493455 DDX53Q86TM3 631 aaKnown RBP16.89■□□□□ 0.29
HPS4-216ENST00000493455 METTL23Q86XA0 190 aa16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms