RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 LEO1Q8WVC0 666 aaPredicted RBP16.34■□□□□ 0.21
USP39-217ENST00000491659 HPS3Q969F9 1004 aa16.34■□□□□ 0.21
USP39-217ENST00000491659 DPP3Q9NY33 737 aa16.34■□□□□ 0.21
USP39-217ENST00000491659 RBAKQ9NYW8 714 aaPredicted RBP16.34■□□□□ 0.21
USP39-217ENST00000491659 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP16.34■□□□□ 0.21
USP39-217ENST00000491659 ZDHHC9Q9Y397 364 aa16.34■□□□□ 0.21
USP39-217ENST00000491659 UBE4BO95155 1302 aa16.34■□□□□ 0.21
USP39-217ENST00000491659 SCN1AP35498 2009 aa16.33■□□□□ 0.21
USP39-217ENST00000491659 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.33■□□□□ 0.2
USP39-217ENST00000491659 PPEF2O14830 753 aa16.33■□□□□ 0.2
USP39-217ENST00000491659 EXTL3O43909 919 aa16.33■□□□□ 0.2
USP39-217ENST00000491659 N4BP1O75113 896 aaKnown RBP16.33■□□□□ 0.2
USP39-217ENST00000491659 ABLIM3O94929 683 aa16.33■□□□□ 0.2
USP39-217ENST00000491659 ATF2P15336 505 aa16.33■□□□□ 0.2
USP39-217ENST00000491659 TYMPP19971 482 aa16.33■□□□□ 0.2
USP39-217ENST00000491659 AFMP43652 599 aa16.33■□□□□ 0.2
USP39-217ENST00000491659 LILRA4P59901 499 aa16.33■□□□□ 0.2
USP39-217ENST00000491659 BMP8AQ7Z5Y6 402 aa16.33■□□□□ 0.2
USP39-217ENST00000491659 SUGP1Q8IWZ8 645 aaKnown RBP16.33■□□□□ 0.2
USP39-217ENST00000491659 EFCAB13Q8IY85 973 aa16.33■□□□□ 0.2
USP39-217ENST00000491659 GPD1LQ8N335 351 aa16.33■□□□□ 0.2
USP39-217ENST00000491659 PBXIP1Q96AQ6 731 aa16.33■□□□□ 0.2
USP39-217ENST00000491659 ZNF560Q96MR9 790 aa16.33■□□□□ 0.2
USP39-217ENST00000491659 MYADMQ96S97 322 aa16.33■□□□□ 0.2
USP39-217ENST00000491659 CBWD1Q9BRT8 395 aa16.33■□□□□ 0.2
USP39-217ENST00000491659 BLZF1Q9H2G9 400 aa16.33■□□□□ 0.2
USP39-217ENST00000491659 CYP4F11Q9HBI6 524 aa16.33■□□□□ 0.2
USP39-217ENST00000491659 IGSF9Q9P2J2 1179 aa16.33■□□□□ 0.2
USP39-217ENST00000491659 EPS15L1Q9UBC2 864 aa16.33■□□□□ 0.2
USP39-217ENST00000491659 TIMM13Q9Y5L4 95 aaPredicted RBP16.33■□□□□ 0.2
USP39-217ENST00000491659 KMT2EQ8IZD2 1858 aa16.33■□□□□ 0.2
USP39-217ENST00000491659 ANO9A1A5B4 782 aa16.32■□□□□ 0.2
USP39-217ENST00000491659 GOLGA8IPA6NC78 632 aa16.32■□□□□ 0.2
USP39-217ENST00000491659 GOLGA8JA6NMD2 632 aa16.32■□□□□ 0.2
USP39-217ENST00000491659 PIRO00625 290 aa16.32■□□□□ 0.2
USP39-217ENST00000491659 OAZ2O95190 189 aa16.32■□□□□ 0.2
USP39-217ENST00000491659 TAF6P49848 677 aa16.32■□□□□ 0.2
USP39-217ENST00000491659 TDGQ13569 410 aa16.32■□□□□ 0.2
USP39-217ENST00000491659 OVOS1Q6IE37 1185 aa16.32■□□□□ 0.2
USP39-217ENST00000491659 TCEAL8Q8IYN2 117 aa16.32■□□□□ 0.2
USP39-217ENST00000491659 GLIS3Q8NEA6 775 aa16.32■□□□□ 0.2
USP39-217ENST00000491659 DOCK6Q96HP0 2047 aa16.32■□□□□ 0.2
USP39-217ENST00000491659 SENP8Q96LD8 212 aa16.32■□□□□ 0.2
USP39-217ENST00000491659 SCAND2PQ9GZW5 306 aaPredicted RBP16.32■□□□□ 0.2
USP39-217ENST00000491659 PCIF1Q9H4Z3 704 aa16.32■□□□□ 0.2
USP39-217ENST00000491659 KCNK12Q9HB15 430 aa16.32■□□□□ 0.2
USP39-217ENST00000491659 AFF4Q9UHB7 1163 aaKnown RBP16.32■□□□□ 0.2
USP39-217ENST00000491659 SERTAD1Q9UHV2 236 aa16.32■□□□□ 0.2
USP39-217ENST00000491659 MAFFQ9ULX9 164 aa16.32■□□□□ 0.2
USP39-217ENST00000491659 INSL5Q9Y5Q6 135 aa16.32■□□□□ 0.2
USP39-217ENST00000491659 ZFP37Q9Y6Q3 630 aaPredicted RBP16.32■□□□□ 0.2
USP39-217ENST00000491659 PVALEFA0A1B0GWK0 134 aa16.31■□□□□ 0.2
USP39-217ENST00000491659 OR6C75A6NL08 312 aa16.31■□□□□ 0.2
USP39-217ENST00000491659 SLFN14P0C7P3 912 aa16.31■□□□□ 0.2
USP39-217ENST00000491659 PFKFB1P16118 471 aa16.31■□□□□ 0.2
USP39-217ENST00000491659 CMA1P23946 247 aa16.31■□□□□ 0.2
USP39-217ENST00000491659 CASP1P29466 404 aa16.31■□□□□ 0.2
USP39-217ENST00000491659 NTHL1P78549 312 aa16.31■□□□□ 0.2
USP39-217ENST00000491659 TFAMQ00059 246 aaKnown RBP16.31■□□□□ 0.2
USP39-217ENST00000491659 CUL4BQ13620 913 aa16.31■□□□□ 0.2
USP39-217ENST00000491659 SV2CQ496J9 727 aa16.31■□□□□ 0.2
USP39-217ENST00000491659 PABPC1LQ4VXU2 614 aaKnown RBP16.31■□□□□ 0.2
USP39-217ENST00000491659 EPM2AIP1Q7L775 607 aaPredicted RBP16.31■□□□□ 0.2
USP39-217ENST00000491659 METTL23Q86XA0 190 aa16.31■□□□□ 0.2
USP39-217ENST00000491659 ELMOD1Q8N336 334 aa16.31■□□□□ 0.2
USP39-217ENST00000491659 ZSWIM2Q8NEG5 633 aa16.31■□□□□ 0.2
USP39-217ENST00000491659 CACTINQ8WUQ7 758 aaKnown RBP16.31■□□□□ 0.2
USP39-217ENST00000491659 ASIC4Q96FT7 647 aa16.31■□□□□ 0.2
USP39-217ENST00000491659 SMOC2Q9H3U7 446 aa16.31■□□□□ 0.2
USP39-217ENST00000491659 USP25Q9UHP3 1055 aa16.31■□□□□ 0.2
USP39-217ENST00000491659 DSEQ9UL01 958 aa16.31■□□□□ 0.2
USP39-217ENST00000491659 A0A1B0GVL5 298 aa16.3■□□□□ 0.2
USP39-217ENST00000491659 SPTLC1O15269 473 aa16.3■□□□□ 0.2
USP39-217ENST00000491659 ACTN4O43707 911 aaKnown RBP16.3■□□□□ 0.2
USP39-217ENST00000491659 LAMP2P13473 410 aa16.3■□□□□ 0.2
USP39-217ENST00000491659 PNPLA4P41247 253 aa16.3■□□□□ 0.2
USP39-217ENST00000491659 EHHADHQ08426 723 aa16.3■□□□□ 0.2
USP39-217ENST00000491659 ADCY1Q08828 1119 aa16.3■□□□□ 0.2
USP39-217ENST00000491659 GRAMD1CQ8IYS0 662 aa16.3■□□□□ 0.2
USP39-217ENST00000491659 FBXL6Q8N531 539 aa16.3■□□□□ 0.2
USP39-217ENST00000491659 ZNF507Q8TCN5 953 aa16.3■□□□□ 0.2
USP39-217ENST00000491659 NXPE3Q969Y0 559 aa16.3■□□□□ 0.2
USP39-217ENST00000491659 CHAMP1Q96JM3 812 aa16.3■□□□□ 0.2
USP39-217ENST00000491659 HCFC1R1Q9NWW0 138 aa16.3■□□□□ 0.2
USP39-217ENST00000491659 HSPBP1Q9NZL4 362 aa16.3■□□□□ 0.2
USP39-217ENST00000491659 CDH7Q9ULB5 785 aa16.3■□□□□ 0.2
USP39-217ENST00000491659 DUSP12Q9UNI6 340 aa16.3■□□□□ 0.2
USP39-217ENST00000491659 NOTCH4Q99466 2003 aa16.29■□□□□ 0.2
USP39-217ENST00000491659 ZNF233A6NK53 670 aa16.29■□□□□ 0.2
USP39-217ENST00000491659 ITGB3P05106 788 aa16.29■□□□□ 0.2
USP39-217ENST00000491659 OR4Q2P0C623 313 aa16.29■□□□□ 0.2
USP39-217ENST00000491659 TMEM191BP0C7N4 346 aa16.29■□□□□ 0.2
USP39-217ENST00000491659 PTPN2P17706 415 aa16.29■□□□□ 0.2
USP39-217ENST00000491659 POLR2BP30876 1174 aaKnown RBP16.29■□□□□ 0.2
USP39-217ENST00000491659 WNT7BP56706 349 aa16.29■□□□□ 0.2
USP39-217ENST00000491659 MYBPC2Q14324 1141 aa16.29■□□□□ 0.2
USP39-217ENST00000491659 SURF1Q15526 300 aa16.29■□□□□ 0.2
USP39-217ENST00000491659 RNF19BQ6ZMZ0 732 aa16.29■□□□□ 0.2
USP39-217ENST00000491659 HS2ST1Q7LGA3 356 aa16.29■□□□□ 0.2
USP39-217ENST00000491659 NELFCDQ8IXH7 590 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms