RNA–Protein interactions for RNA: ENST00000491592.1

RTN4-215, Transcript of reticulon 4, human

TSL 2

Gene RTN4, Length 860 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RTN4-215	ENST00000491592	KIAA1614	Q5VZ46	1190 aa		5.37	□□□□□ -1.55
RTN4-215	ENST00000491592	ISM2	Q6H9L7	571 aa		5.37	□□□□□ -1.55
RTN4-215	ENST00000491592	PGM2L1	Q6PCE3	622 aa		5.37	□□□□□ -1.55
RTN4-215	ENST00000491592	PLEKHH3	Q7Z736	793 aa		5.37	□□□□□ -1.55
RTN4-215	ENST00000491592	PPP1R14C	Q8TAE6	165 aa		5.37	□□□□□ -1.55
RTN4-215	ENST00000491592	FEZF2	Q8TBJ5	459 aa		5.37	□□□□□ -1.55
RTN4-215	ENST00000491592	POF1B	Q8WVV4	589 aa		5.37	□□□□□ -1.55
RTN4-215	ENST00000491592	SSH1	Q8WYL5	1049 aa		5.37	□□□□□ -1.55
RTN4-215	ENST00000491592	GFM2	Q969S9	779 aa	Known RBP	5.37	□□□□□ -1.55
RTN4-215	ENST00000491592	CENPT	Q96BT3	561 aa		5.37	□□□□□ -1.55
RTN4-215	ENST00000491592	CLIP3	Q96DZ5	547 aa		5.37	□□□□□ -1.55
RTN4-215	ENST00000491592	FUBP3	Q96I24	572 aa	Known RBP eCLIP	5.37	□□□□□ -1.55	2e-9	■■■□□ 15.2
RTN4-215	ENST00000491592	EIF2AK1	Q9BQI3	630 aa	Known RBP	5.37	□□□□□ -1.55
RTN4-215	ENST00000491592	NUDT16L1	Q9BRJ7	211 aa	Known RBP	5.37	□□□□□ -1.55
RTN4-215	ENST00000491592	ISCA1	Q9BUE6	129 aa		5.37	□□□□□ -1.55
RTN4-215	ENST00000491592	MRPL9	Q9BYD2	267 aa	Known RBP	5.37	□□□□□ -1.55
RTN4-215	ENST00000491592	SLC13A1	Q9BZW2	595 aa		5.37	□□□□□ -1.55
RTN4-215	ENST00000491592	OR10A2	Q9H208	303 aa		5.37	□□□□□ -1.55
RTN4-215	ENST00000491592	TBC1D22B	Q9NU19	505 aa		5.37	□□□□□ -1.55
RTN4-215	ENST00000491592	NOL12	Q9UGY1	213 aa	Known RBP eCLIP	5.37	□□□□□ -1.55
RTN4-215	ENST00000491592	XPO7	Q9UIA9	1087 aa	Known RBP	5.37	□□□□□ -1.55
RTN4-215	ENST00000491592	FAM184B	Q9ULE4	1060 aa		5.37	□□□□□ -1.55
RTN4-215	ENST00000491592	KNSTRN	Q9Y448	316 aa		5.37	□□□□□ -1.55
RTN4-215	ENST00000491592	GPR45	Q9Y5Y3	372 aa		5.37	□□□□□ -1.55
RTN4-215	ENST00000491592	FRMPD2	Q68DX3	1309 aa	Predicted RBP	5.37	□□□□□ -1.55
RTN4-215	ENST00000491592	PLEKHH1	Q9ULM0	1364 aa		5.37	□□□□□ -1.55
RTN4-215	ENST00000491592	GPATCH8	Q9UKJ3	1502 aa	Known RBP	5.37	□□□□□ -1.55
RTN4-215	ENST00000491592	TOR1B	O14657	336 aa		5.36	□□□□□ -1.55
RTN4-215	ENST00000491592	PLOD3	O60568	738 aa		5.36	□□□□□ -1.55
RTN4-215	ENST00000491592	OFD1	O75665	1012 aa		5.36	□□□□□ -1.55
RTN4-215	ENST00000491592	MBD4	O95243	580 aa		5.36	□□□□□ -1.55
RTN4-215	ENST00000491592	HNRNPL	P14866	589 aa	Known RBP eCLIP	5.36	□□□□□ -1.55
RTN4-215	ENST00000491592	AGXT	P21549	392 aa		5.36	□□□□□ -1.55
RTN4-215	ENST00000491592	PPP2R1A	P30153	589 aa		5.36	□□□□□ -1.55
RTN4-215	ENST00000491592	CYP2C19	P33261	490 aa		5.36	□□□□□ -1.55
RTN4-215	ENST00000491592	RAD52	P43351	418 aa		5.36	□□□□□ -1.55
RTN4-215	ENST00000491592	STT3A	P46977	705 aa		5.36	□□□□□ -1.55
RTN4-215	ENST00000491592	SLC5A3	P53794	718 aa		5.36	□□□□□ -1.55
RTN4-215	ENST00000491592	SESN2	P58004	480 aa	Predicted RBP	5.36	□□□□□ -1.55
RTN4-215	ENST00000491592	CCT2	P78371	535 aa	Known RBP	5.36	□□□□□ -1.55
RTN4-215	ENST00000491592	HMGN5	P82970	282 aa	Known RBP	5.36	□□□□□ -1.55
RTN4-215	ENST00000491592	CDK17	Q00537	523 aa		5.36	□□□□□ -1.55
RTN4-215	ENST00000491592	MGAT5	Q09328	741 aa		5.36	□□□□□ -1.55
RTN4-215	ENST00000491592	ADAM15	Q13444	863 aa		5.36	□□□□□ -1.55
RTN4-215	ENST00000491592	GTF2H3	Q13889	308 aa		5.36	□□□□□ -1.55
RTN4-215	ENST00000491592	PSMD6	Q15008	389 aa		5.36	□□□□□ -1.55
RTN4-215	ENST00000491592	PCBP2	Q15366	365 aa	Known RBP eCLIP	5.36	□□□□□ -1.55
RTN4-215	ENST00000491592	ARHGAP29	Q52LW3	1261 aa		5.36	□□□□□ -1.55
RTN4-215	ENST00000491592	RILPL1	Q5EBL4	403 aa		5.36	□□□□□ -1.55
RTN4-215	ENST00000491592	DNAJC21	Q5F1R6	531 aa	Known RBP	5.36	□□□□□ -1.55
RTN4-215	ENST00000491592	SPATA1	Q5VX52	437 aa		5.36	□□□□□ -1.55
RTN4-215	ENST00000491592	MBNL2	Q5VZF2	373 aa	Known RBP	5.36	□□□□□ -1.55
RTN4-215	ENST00000491592	HIBCH	Q6NVY1	386 aa	Predicted RBP	5.36	□□□□□ -1.55
RTN4-215	ENST00000491592	LMBR1L	Q6UX01	489 aa		5.36	□□□□□ -1.55
RTN4-215	ENST00000491592	LDHAL6A	Q6ZMR3	332 aa		5.36	□□□□□ -1.55
RTN4-215	ENST00000491592	UNC5B	Q8IZJ1	945 aa		5.36	□□□□□ -1.55
RTN4-215	ENST00000491592	ZFPM2	Q8WW38	1151 aa		5.36	□□□□□ -1.55
RTN4-215	ENST00000491592	SNX21	Q969T3	373 aa		5.36	□□□□□ -1.55
RTN4-215	ENST00000491592	GCC1	Q96CN9	775 aa		5.36	□□□□□ -1.55
RTN4-215	ENST00000491592	ZBTB10	Q96DT7	871 aa		5.36	□□□□□ -1.55
RTN4-215	ENST00000491592	VMP1	Q96GC9	406 aa		5.36	□□□□□ -1.55
RTN4-215	ENST00000491592	FAXDC2	Q96IV6	333 aa		5.36	□□□□□ -1.55
RTN4-215	ENST00000491592	TESK2	Q96S53	571 aa		5.36	□□□□□ -1.55
RTN4-215	ENST00000491592	PPP1R9B	Q96SB3	815 aa		5.36	□□□□□ -1.55
RTN4-215	ENST00000491592	DBNDD1	Q9H9R9	158 aa		5.36	□□□□□ -1.55
RTN4-215	ENST00000491592	ZNF277	Q9NRM2	450 aa	Predicted RBP	5.36	□□□□□ -1.55
RTN4-215	ENST00000491592	SMC4	Q9NTJ3	1288 aa		5.36	□□□□□ -1.55
RTN4-215	ENST00000491592	EPS15L1	Q9UBC2	864 aa		5.36	□□□□□ -1.55
RTN4-215	ENST00000491592	INVS	Q9Y283	1065 aa		5.36	□□□□□ -1.55
RTN4-215	ENST00000491592	ANKRD6	Q9Y2G4	727 aa		5.36	□□□□□ -1.55
RTN4-215	ENST00000491592	MAGED1	Q9Y5V3	778 aa	Predicted RBP	5.36	□□□□□ -1.55
RTN4-215	ENST00000491592	LRRFIP2	Q9Y608	721 aa	Known RBP	5.36	□□□□□ -1.55
RTN4-215	ENST00000491592	SLC4A7	Q9Y6M7	1214 aa		5.36	□□□□□ -1.55
RTN4-215	ENST00000491592	ZNF644	Q9H582	1327 aa	Predicted RBP	5.36	□□□□□ -1.55
RTN4-215	ENST00000491592	TDRD9	Q8NDG6	1382 aa	Known RBP	5.36	□□□□□ -1.55
RTN4-215	ENST00000491592	CCDC141	Q6ZP82	1450 aa		5.36	□□□□□ -1.55
RTN4-215	ENST00000491592	URB2	Q14146	1524 aa	Known RBP	5.36	□□□□□ -1.55
RTN4-215	ENST00000491592	PBRM1	Q86U86	1689 aa		5.35	□□□□□ -1.55
RTN4-215	ENST00000491592	SYNM	O15061	1565 aa		5.35	□□□□□ -1.55
RTN4-215	ENST00000491592	ARHGEF5	Q12774	1597 aa		5.35	□□□□□ -1.55
RTN4-215	ENST00000491592	ASXL1	Q8IXJ9	1541 aa		5.35	□□□□□ -1.55
RTN4-215	ENST00000491592	NUP153	P49790	1475 aa	Known RBP	5.35	□□□□□ -1.55
RTN4-215	ENST00000491592	ABCC10	Q5T3U5	1492 aa		5.35	□□□□□ -1.55
RTN4-215	ENST00000491592	IBTK	Q9P2D0	1353 aa	Predicted RBP	5.35	□□□□□ -1.55
RTN4-215	ENST00000491592		A0A1B0GVC2	190 aa		5.35	□□□□□ -1.55
RTN4-215	ENST00000491592	C19orf81	C9J6K1	198 aa		5.35	□□□□□ -1.55
RTN4-215	ENST00000491592	ARHGAP6	O43182	974 aa		5.35	□□□□□ -1.55
RTN4-215	ENST00000491592	PCDHGA12	O60330	932 aa		5.35	□□□□□ -1.55
RTN4-215	ENST00000491592	TLR5	O60602	858 aa		5.35	□□□□□ -1.55
RTN4-215	ENST00000491592	FSBP	O95073	299 aa		5.35	□□□□□ -1.55
RTN4-215	ENST00000491592	SNUPN	O95149	360 aa	Known RBP	5.35	□□□□□ -1.55
RTN4-215	ENST00000491592	IFIT1	P09914	478 aa	Known RBP	5.35	□□□□□ -1.55
RTN4-215	ENST00000491592	TSPY4	P0CV99	314 aa		5.35	□□□□□ -1.55
RTN4-215	ENST00000491592	TSPY10	P0CW01	314 aa		5.35	□□□□□ -1.55
RTN4-215	ENST00000491592	GYS1	P13807	737 aa		5.35	□□□□□ -1.55
RTN4-215	ENST00000491592	MCM5	P33992	734 aa		5.35	□□□□□ -1.55
RTN4-215	ENST00000491592	GRK6	P43250	576 aa		5.35	□□□□□ -1.55
RTN4-215	ENST00000491592	TMED1	Q13445	227 aa		5.35	□□□□□ -1.55
RTN4-215	ENST00000491592	ACAP2	Q15057	778 aa		5.35	□□□□□ -1.55
RTN4-215	ENST00000491592	TBR1	Q16650	682 aa		5.35	□□□□□ -1.55

Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms