RNA–Protein interactions for RNA: ENST00000488376.2

SYNE1-226, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 414 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-226ENST00000488376 DSTYKQ6XUX3 929 aa15.05■□□□□ -0
SYNE1-226ENST00000488376 STXBP4Q6ZWJ1 553 aa15.05■□□□□ -0
SYNE1-226ENST00000488376 C1orf127Q8N9H9 656 aa15.05■□□□□ -0
SYNE1-226ENST00000488376 RDH13Q8NBN7 331 aa15.05■□□□□ -0
SYNE1-226ENST00000488376 ST13P5Q8NFI4 369 aaPredicted RBP15.05■□□□□ -0
SYNE1-226ENST00000488376 OR5B17Q8NGF7 314 aa15.05■□□□□ -0
SYNE1-226ENST00000488376 BORCS6Q96GS4 357 aa15.05■□□□□ -0
SYNE1-226ENST00000488376 SENP8Q96LD8 212 aa15.05■□□□□ -0
SYNE1-226ENST00000488376 TSPAN18Q96SJ8 248 aa15.05■□□□□ -0
SYNE1-226ENST00000488376 TMEM209Q96SK2 561 aa15.05■□□□□ -0
SYNE1-226ENST00000488376 PRKD2Q9BZL6 878 aa15.05■□□□□ -0
SYNE1-226ENST00000488376 GZF1Q9H116 711 aaPredicted RBP15.05■□□□□ -0
SYNE1-226ENST00000488376 EXOC1Q9NV70 894 aa15.05■□□□□ -0
SYNE1-226ENST00000488376 HCFC1R1Q9NWW0 138 aa15.05■□□□□ -0
SYNE1-226ENST00000488376 ZDHHC7Q9NXF8 308 aa15.05■□□□□ -0
SYNE1-226ENST00000488376 USP25Q9UHP3 1055 aa15.05■□□□□ -0
SYNE1-226ENST00000488376 CLUHO75153 1309 aa15.05■□□□□ -0
SYNE1-226ENST00000488376 DENND4AQ7Z401 1863 aa15.05■□□□□ -0
SYNE1-226ENST00000488376 UBE4BO95155 1302 aa15.04■□□□□ -0
SYNE1-226ENST00000488376 ABLIM3O94929 683 aa15.04■□□□□ -0
SYNE1-226ENST00000488376 LDHAP00338 332 aaKnown RBP15.04■□□□□ -0
SYNE1-226ENST00000488376 RPN1P04843 607 aaKnown RBP15.04■□□□□ -0
SYNE1-226ENST00000488376 POLR2BP30876 1174 aaKnown RBP15.04■□□□□ -0
SYNE1-226ENST00000488376 POU5F1Q01860 360 aaKnown RBP15.04■□□□□ -0
SYNE1-226ENST00000488376 DPYDQ12882 1025 aa15.04■□□□□ -0
SYNE1-226ENST00000488376 PPM1LQ5SGD2 360 aa15.04■□□□□ -0
SYNE1-226ENST00000488376 LIN9Q5TKA1 542 aa15.04■□□□□ -0
SYNE1-226ENST00000488376 ZNF280DQ6N043 979 aa15.04■□□□□ -0
SYNE1-226ENST00000488376 RNF19BQ6ZMZ0 732 aa15.04■□□□□ -0
SYNE1-226ENST00000488376 CCDC149Q6ZUS6 474 aa15.04■□□□□ -0
SYNE1-226ENST00000488376 GRASPQ7Z6J2 395 aaPredicted RBP15.04■□□□□ -0
SYNE1-226ENST00000488376 TDRD5Q8NAT2 981 aaKnown RBP15.04■□□□□ -0
SYNE1-226ENST00000488376 MYADMQ96S97 322 aa15.04■□□□□ -0
SYNE1-226ENST00000488376 MTMR12Q9C0I1 747 aa15.04■□□□□ -0
SYNE1-226ENST00000488376 WDR6Q9NNW5 1121 aaKnown RBP15.04■□□□□ -0
SYNE1-226ENST00000488376 LIMD1Q9UGP4 676 aa15.04■□□□□ -0
SYNE1-226ENST00000488376 RAPGEFL1Q9UHV5 662 aa15.04■□□□□ -0
SYNE1-226ENST00000488376 SIX4Q9UIU6 781 aa15.04■□□□□ -0
SYNE1-226ENST00000488376 NR2E1Q9Y466 385 aa15.04■□□□□ -0
SYNE1-226ENST00000488376 NCOR1O75376 2440 aa15.04■□□□□ -0
SYNE1-226ENST00000488376 H7C4K7 107 aa15.03■□□□□ -0
SYNE1-226ENST00000488376 NRG2O14511 850 aaPredicted RBP15.03■□□□□ -0
SYNE1-226ENST00000488376 OAZ2O95190 189 aa15.03■□□□□ -0
SYNE1-226ENST00000488376 ITGB3P05106 788 aa15.03■□□□□ -0
SYNE1-226ENST00000488376 YWHAHQ04917 246 aaPredicted RBP15.03■□□□□ -0
SYNE1-226ENST00000488376 SNW1Q13573 536 aaKnown RBP15.03■□□□□ -0
SYNE1-226ENST00000488376 KNOP1Q1ED39 458 aaKnown RBP15.03■□□□□ -0
SYNE1-226ENST00000488376 FMR1NBQ8N0W7 255 aaPredicted RBP15.03■□□□□ -0
SYNE1-226ENST00000488376 APPL2Q8NEU8 664 aa15.03■□□□□ -0
SYNE1-226ENST00000488376 OR10T2Q8NGX3 314 aa15.03■□□□□ -0
SYNE1-226ENST00000488376 ZNF461Q8TAF7 563 aa15.03■□□□□ -0
SYNE1-226ENST00000488376 PLEKHO2Q8TD55 490 aa15.03■□□□□ -0
SYNE1-226ENST00000488376 PGLYRP2Q96PD5 576 aa15.03■□□□□ -0
SYNE1-226ENST00000488376 RTP3Q9BQQ7 232 aa15.03■□□□□ -0
SYNE1-226ENST00000488376 LRFN3Q9BTN0 628 aa15.03■□□□□ -0
SYNE1-226ENST00000488376 CRISPLD1Q9H336 500 aa15.03■□□□□ -0
SYNE1-226ENST00000488376 PIDD1Q9HB75 910 aa15.03■□□□□ -0
SYNE1-226ENST00000488376 DPP7Q9UHL4 492 aa15.03■□□□□ -0
SYNE1-226ENST00000488376 POLIQ9UNA4 740 aa15.03■□□□□ -0
SYNE1-226ENST00000488376 AGAP1Q9UPQ3 857 aa15.03■□□□□ -0
SYNE1-226ENST00000488376 TCHHQ07283 1943 aa15.03■□□□□ -0
SYNE1-226ENST00000488376 TSC2P49815 1807 aa15.02■□□□□ -0
SYNE1-226ENST00000488376 ZNF233A6NK53 670 aa15.02■□□□□ -0
SYNE1-226ENST00000488376 TAF6P49848 677 aa15.02■□□□□ -0
SYNE1-226ENST00000488376 ADCY1Q08828 1119 aa15.02■□□□□ -0
SYNE1-226ENST00000488376 PNOCQ13519 176 aa15.02■□□□□ -0
SYNE1-226ENST00000488376 SNRNP35Q16560 246 aaKnown RBP15.02■□□□□ -0
SYNE1-226ENST00000488376 PTPN21Q16825 1174 aa15.02■□□□□ -0
SYNE1-226ENST00000488376 WSCD1Q658N2 575 aa15.02■□□□□ -0
SYNE1-226ENST00000488376 OVOS1Q6IE37 1185 aa15.02■□□□□ -0
SYNE1-226ENST00000488376 ELMSAN1Q6PJG2 1045 aa15.02■□□□□ -0
SYNE1-226ENST00000488376 GET4Q7L5D6 327 aaPredicted RBP15.02■□□□□ -0
SYNE1-226ENST00000488376 TTC9BQ8N6N2 239 aa15.02■□□□□ -0
SYNE1-226ENST00000488376 ENGASEQ8NFI3 743 aa15.02■□□□□ -0
SYNE1-226ENST00000488376 ERCC4Q92889 916 aaPredicted RBP15.02■□□□□ -0
SYNE1-226ENST00000488376 RHOBTB2Q9BYZ6 727 aa15.02■□□□□ -0
SYNE1-226ENST00000488376 KCTD10Q9H3F6 313 aa15.02■□□□□ -0
SYNE1-226ENST00000488376 DNMT3BQ9UBC3 853 aaKnown RBP15.02■□□□□ -0
SYNE1-226ENST00000488376 MAPK8IP1Q9UQF2 711 aa15.02■□□□□ -0
SYNE1-226ENST00000488376 CYB561D2O14569 222 aa15.01□□□□□ -0.01
SYNE1-226ENST00000488376 HNRNPA1P09651 372 aaKnown RBP eCLIP15.01□□□□□ -0.01
SYNE1-226ENST00000488376 ODC1P11926 461 aa15.01□□□□□ -0.01
SYNE1-226ENST00000488376 ALADP13716 330 aa15.01□□□□□ -0.01
SYNE1-226ENST00000488376 CPB1P15086 417 aa15.01□□□□□ -0.01
SYNE1-226ENST00000488376 ATF2P15336 505 aa15.01□□□□□ -0.01
SYNE1-226ENST00000488376 TYMPP19971 482 aa15.01□□□□□ -0.01
SYNE1-226ENST00000488376 HOXA9P31269 272 aa15.01□□□□□ -0.01
SYNE1-226ENST00000488376 CASP4P49662 377 aa15.01□□□□□ -0.01
SYNE1-226ENST00000488376 ZXDAP98168 799 aa15.01□□□□□ -0.01
SYNE1-226ENST00000488376 CYP24A1Q07973 514 aa15.01□□□□□ -0.01
SYNE1-226ENST00000488376 TMEM31Q5JXX7 168 aa15.01□□□□□ -0.01
SYNE1-226ENST00000488376 POTEHQ6S545 545 aa15.01□□□□□ -0.01
SYNE1-226ENST00000488376 TCEAL8Q8IYN2 117 aa15.01□□□□□ -0.01
SYNE1-226ENST00000488376 ZDHHC14Q8IZN3 488 aa15.01□□□□□ -0.01
SYNE1-226ENST00000488376 CSGALNACT2Q8N6G5 542 aa15.01□□□□□ -0.01
SYNE1-226ENST00000488376 ITFG1Q8TB96 612 aa15.01□□□□□ -0.01
SYNE1-226ENST00000488376 RSAD2Q8WXG1 361 aa15.01□□□□□ -0.01
SYNE1-226ENST00000488376 C1QTNF1Q9BXJ1 281 aa15.01□□□□□ -0.01
SYNE1-226ENST00000488376 CYP4F11Q9HBI6 524 aa15.01□□□□□ -0.01
SYNE1-226ENST00000488376 INTS13Q9NVM9 706 aa15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms