RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 ASPMQ8IZT6 3477 aa16.81■□□□□ 0.28
MCF2L-228ENST00000487354 H7C4K7 107 aa16.81■□□□□ 0.28
MCF2L-228ENST00000487354 PMLP29590 882 aa16.81■□□□□ 0.28
MCF2L-228ENST00000487354 NPTX2P47972 431 aa16.81■□□□□ 0.28
MCF2L-228ENST00000487354 ZNF280DQ6N043 979 aa16.81■□□□□ 0.28
MCF2L-228ENST00000487354 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.81■□□□□ 0.28
MCF2L-228ENST00000487354 LEMD2Q8NC56 503 aa16.81■□□□□ 0.28
MCF2L-228ENST00000487354 KIFAP3Q92845 792 aa16.81■□□□□ 0.28
MCF2L-228ENST00000487354 CCDC94Q9BW85 323 aaPredicted RBP16.81■□□□□ 0.28
MCF2L-228ENST00000487354 TARS2Q9BW92 718 aaKnown RBP16.81■□□□□ 0.28
MCF2L-228ENST00000487354 BHMT2Q9H2M3 363 aa16.81■□□□□ 0.28
MCF2L-228ENST00000487354 ASAH2Q9NR71 780 aa16.81■□□□□ 0.28
MCF2L-228ENST00000487354 TOPORSQ9NS56 1045 aaPredicted RBP16.81■□□□□ 0.28
MCF2L-228ENST00000487354 RXFP3Q9NSD7 469 aa16.81■□□□□ 0.28
MCF2L-228ENST00000487354 DAXXQ9UER7 740 aaPredicted RBP16.81■□□□□ 0.28
MCF2L-228ENST00000487354 TUBGCP4Q9UGJ1 667 aa16.81■□□□□ 0.28
MCF2L-228ENST00000487354 ZZEF1O43149 2961 aa16.81■□□□□ 0.28
MCF2L-228ENST00000487354 SPEGQ15772 3267 aa16.81■□□□□ 0.28
MCF2L-228ENST00000487354 MYBPHLA2RUH7 354 aa16.8■□□□□ 0.28
MCF2L-228ENST00000487354 CHADO15335 359 aa16.8■□□□□ 0.28
MCF2L-228ENST00000487354 OR52Z1P0C646 297 aa16.8■□□□□ 0.28
MCF2L-228ENST00000487354 CTHP32929 405 aa16.8■□□□□ 0.28
MCF2L-228ENST00000487354 RPL9P32969 192 aaKnown RBP16.8■□□□□ 0.28
MCF2L-228ENST00000487354 YARSP54577 528 aaKnown RBP16.8■□□□□ 0.28
MCF2L-228ENST00000487354 MAPK7Q13164 816 aa16.8■□□□□ 0.28
MCF2L-228ENST00000487354 CCINQ13939 588 aa16.8■□□□□ 0.28
MCF2L-228ENST00000487354 HEATR6Q6AI08 1181 aaKnown RBP16.8■□□□□ 0.28
MCF2L-228ENST00000487354 IQCEQ6IPM2 695 aa16.8■□□□□ 0.28
MCF2L-228ENST00000487354 MSANTD3Q96H12 275 aa16.8■□□□□ 0.28
MCF2L-228ENST00000487354 IFT74Q96LB3 600 aa16.8■□□□□ 0.28
MCF2L-228ENST00000487354 ZNF512Q96ME7 567 aaPredicted RBP16.8■□□□□ 0.28
MCF2L-228ENST00000487354 TBC1D32Q96NH3 1257 aa16.8■□□□□ 0.28
MCF2L-228ENST00000487354 MAFFQ9ULX9 164 aa16.8■□□□□ 0.28
MCF2L-228ENST00000487354 WDFY3Q8IZQ1 3526 aa16.79■□□□□ 0.28
MCF2L-228ENST00000487354 A0A1W2PRU2 124 aa16.79■□□□□ 0.28
MCF2L-228ENST00000487354 SPECC1L-ADORA2AF8WAN1 911 aa16.79■□□□□ 0.28
MCF2L-228ENST00000487354 K7ERI5 159 aa16.79■□□□□ 0.28
MCF2L-228ENST00000487354 OR4Q2P0C623 313 aa16.79■□□□□ 0.28
MCF2L-228ENST00000487354 MCF2P10911 925 aa16.79■□□□□ 0.28
MCF2L-228ENST00000487354 MUTP22033 750 aa16.79■□□□□ 0.28
MCF2L-228ENST00000487354 HOXA6P31267 233 aa16.79■□□□□ 0.28
MCF2L-228ENST00000487354 CNR2P34972 360 aa16.79■□□□□ 0.28
MCF2L-228ENST00000487354 LRRC32Q14392 662 aa16.79■□□□□ 0.28
MCF2L-228ENST00000487354 SLC10A6Q3KNW5 377 aa16.79■□□□□ 0.28
MCF2L-228ENST00000487354 PKN3Q6P5Z2 889 aa16.79■□□□□ 0.28
MCF2L-228ENST00000487354 GPIHBP1Q8IV16 184 aa16.79■□□□□ 0.28
MCF2L-228ENST00000487354 ELMOD1Q8N336 334 aa16.79■□□□□ 0.28
MCF2L-228ENST00000487354 C4orf32Q8N8J7 132 aa16.79■□□□□ 0.28
MCF2L-228ENST00000487354 ZFYVE19Q96K21 471 aa16.79■□□□□ 0.28
MCF2L-228ENST00000487354 ZBTB45Q96K62 511 aaPredicted RBP16.79■□□□□ 0.28
MCF2L-228ENST00000487354 TMEM134Q9H6X4 195 aa16.79■□□□□ 0.28
MCF2L-228ENST00000487354 RALYQ9UKM9 306 aaKnown RBP16.79■□□□□ 0.28
MCF2L-228ENST00000487354 PCDHB8Q9UN66 801 aa16.79■□□□□ 0.28
MCF2L-228ENST00000487354 NUB1Q9Y5A7 615 aa16.79■□□□□ 0.28
MCF2L-228ENST00000487354 CACNA1GO43497 2377 aa16.78■□□□□ 0.28
MCF2L-228ENST00000487354 M0QZQ0 153 aa16.78■□□□□ 0.28
MCF2L-228ENST00000487354 MCM4P33991 863 aa16.78■□□□□ 0.28
MCF2L-228ENST00000487354 AARSP49588 968 aaKnown RBP eCLIP16.78■□□□□ 0.28
MCF2L-228ENST00000487354 LIMK1P53667 647 aa16.78■□□□□ 0.28
MCF2L-228ENST00000487354 PEX3P56589 373 aa16.78■□□□□ 0.28
MCF2L-228ENST00000487354 SF3A2Q15428 464 aaKnown RBP16.78■□□□□ 0.28
MCF2L-228ENST00000487354 ZNF174Q15697 407 aa16.78■□□□□ 0.28
MCF2L-228ENST00000487354 SEZ6Q53EL9 994 aa16.78■□□□□ 0.28
MCF2L-228ENST00000487354 N4BP2L1Q5TBK1 243 aaPredicted RBP16.78■□□□□ 0.28
MCF2L-228ENST00000487354 MPZL3Q6UWV2 235 aa16.78■□□□□ 0.28
MCF2L-228ENST00000487354 GAREM2Q75VX8 874 aa16.78■□□□□ 0.28
MCF2L-228ENST00000487354 APBB1IPQ7Z5R6 666 aaPredicted RBP16.78■□□□□ 0.28
MCF2L-228ENST00000487354 WDR5BQ86VZ2 330 aa16.78■□□□□ 0.28
MCF2L-228ENST00000487354 TTC9BQ8N6N2 239 aa16.78■□□□□ 0.28
MCF2L-228ENST00000487354 ERMNQ8TAM6 284 aa16.78■□□□□ 0.28
MCF2L-228ENST00000487354 CHFRQ96EP1 664 aa16.78■□□□□ 0.28
MCF2L-228ENST00000487354 ACAP3Q96P50 834 aa16.78■□□□□ 0.28
MCF2L-228ENST00000487354 RUSC1Q9BVN2 902 aa16.78■□□□□ 0.28
MCF2L-228ENST00000487354 MRPL4Q9BYD3 311 aaKnown RBP16.78■□□□□ 0.28
MCF2L-228ENST00000487354 C8orf33Q9H7E9 229 aaPredicted RBP16.78■□□□□ 0.28
MCF2L-228ENST00000487354 GTSE1Q9NYZ3 720 aa16.78■□□□□ 0.28
MCF2L-228ENST00000487354 FAM208BQ5VWN6 2430 aa16.78■□□□□ 0.28
MCF2L-228ENST00000487354 SCN1AP35498 2009 aa16.77■□□□□ 0.28
MCF2L-228ENST00000487354 ZNF638Q14966 1978 aaKnown RBP16.77■□□□□ 0.28
MCF2L-228ENST00000487354 HIP1RO75146 1068 aa16.77■□□□□ 0.28
MCF2L-228ENST00000487354 OAZ2O95190 189 aa16.77■□□□□ 0.28
MCF2L-228ENST00000487354 PRAMEF12O95522 483 aa16.77■□□□□ 0.28
MCF2L-228ENST00000487354 CPB1P15086 417 aa16.77■□□□□ 0.28
MCF2L-228ENST00000487354 SHC2P98077 582 aa16.77■□□□□ 0.28
MCF2L-228ENST00000487354 PON2Q15165 354 aa16.77■□□□□ 0.28
MCF2L-228ENST00000487354 CCDC6Q16204 474 aa16.77■□□□□ 0.28
MCF2L-228ENST00000487354 ARID3BQ8IVW6 561 aaPredicted RBP16.77■□□□□ 0.28
MCF2L-228ENST00000487354 APPL2Q8NEU8 664 aa16.77■□□□□ 0.28
MCF2L-228ENST00000487354 TTC8Q8TAM2 541 aa16.77■□□□□ 0.28
MCF2L-228ENST00000487354 CSGALNACT1Q8TDX6 532 aa16.77■□□□□ 0.28
MCF2L-228ENST00000487354 E2F7Q96AV8 911 aa16.77■□□□□ 0.28
MCF2L-228ENST00000487354 PGLYRP2Q96PD5 576 aa16.77■□□□□ 0.28
MCF2L-228ENST00000487354 GPR88Q9GZN0 384 aa16.77■□□□□ 0.28
MCF2L-228ENST00000487354 HAPLN2Q9GZV7 340 aa16.77■□□□□ 0.28
MCF2L-228ENST00000487354 KIAA1024Q9UPX6 916 aa16.77■□□□□ 0.28
MCF2L-228ENST00000487354 TIMM13Q9Y5L4 95 aaPredicted RBP16.77■□□□□ 0.28
MCF2L-228ENST00000487354 BAHCC1Q9P281 2608 aa16.77■□□□□ 0.27
MCF2L-228ENST00000487354 NUP205Q92621 2012 aa16.76■□□□□ 0.27
MCF2L-228ENST00000487354 CCDC169A6NNP5 214 aa16.76■□□□□ 0.27
MCF2L-228ENST00000487354 EXTL3O43909 919 aa16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms