RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 E9PLN8 166 aa5.16□□□□□ -1.58
VPS41-213ENST00000485955 SNUPNO95149 360 aaKnown RBP5.16□□□□□ -1.58
VPS41-213ENST00000485955 PRR16Q569H4 304 aa5.16□□□□□ -1.58
VPS41-213ENST00000485955 SP5Q6BEB4 398 aaPredicted RBP5.16□□□□□ -1.58
VPS41-213ENST00000485955 ZNF575Q86XF7 245 aa5.16□□□□□ -1.58
VPS41-213ENST00000485955 CFAP52Q8N1V2 620 aa5.16□□□□□ -1.58
VPS41-213ENST00000485955 LNX2Q8N448 690 aa5.16□□□□□ -1.58
VPS41-213ENST00000485955 CPA6Q8N4T0 437 aa5.16□□□□□ -1.58
VPS41-213ENST00000485955 PDPRQ8NCN5 879 aa5.16□□□□□ -1.58
VPS41-213ENST00000485955 SIMC1Q8NDZ2 872 aa5.16□□□□□ -1.58
VPS41-213ENST00000485955 VKORC1Q9BQB6 163 aa5.16□□□□□ -1.58
VPS41-213ENST00000485955 IMPG2Q9BZV3 1241 aa5.16□□□□□ -1.58
VPS41-213ENST00000485955 BRINP2Q9C0B6 783 aa5.16□□□□□ -1.58
VPS41-213ENST00000485955 NOP58Q9Y2X3 529 aaKnown RBP5.16□□□□□ -1.58
VPS41-213ENST00000485955 LUC7L2Q9Y383 392 aaKnown RBP5.16□□□□□ -1.58
VPS41-213ENST00000485955 PCDHA3Q9Y5H8 950 aa5.16□□□□□ -1.58
VPS41-213ENST00000485955 PCSK5Q92824 1860 aa5.15□□□□□ -1.58
VPS41-213ENST00000485955 A0A1W2PS29 197 aa5.15□□□□□ -1.59
VPS41-213ENST00000485955 ANKRD62A6NC57 917 aa5.15□□□□□ -1.59
VPS41-213ENST00000485955 MGST3O14880 152 aa5.15□□□□□ -1.59
VPS41-213ENST00000485955 SUN1O94901 812 aa5.15□□□□□ -1.59
VPS41-213ENST00000485955 KCNA2P16389 499 aa5.15□□□□□ -1.59
VPS41-213ENST00000485955 CXCR5P32302 372 aa5.15□□□□□ -1.59
VPS41-213ENST00000485955 SIM1P81133 766 aaPredicted RBP5.15□□□□□ -1.59
VPS41-213ENST00000485955 MC2RQ01718 297 aa5.15□□□□□ -1.59
VPS41-213ENST00000485955 ZNF169Q14929 603 aaPredicted RBP5.15□□□□□ -1.59
VPS41-213ENST00000485955 SF3B3Q15393 1217 aaKnown RBP5.15□□□□□ -1.59
VPS41-213ENST00000485955 CD300EQ496F6 205 aaPredicted RBP5.15□□□□□ -1.59
VPS41-213ENST00000485955 TMPRSS9Q7Z410 1059 aa5.15□□□□□ -1.59
VPS41-213ENST00000485955 COLGALT2Q8IYK4 626 aa5.15□□□□□ -1.59
VPS41-213ENST00000485955 SSH3Q8TE77 659 aa5.15□□□□□ -1.59
VPS41-213ENST00000485955 NTN5Q8WTR8 489 aaPredicted RBP5.15□□□□□ -1.59
VPS41-213ENST00000485955 MRPS18AQ9NVS2 196 aaKnown RBP5.15□□□□□ -1.59
VPS41-213ENST00000485955 FOXJ2Q9P0K8 574 aa5.15□□□□□ -1.59
VPS41-213ENST00000485955 TRGV11A0A075B6L2 103 aa5.14□□□□□ -1.59
VPS41-213ENST00000485955 PRAMEF33A0A0G2JMD5 474 aa5.14□□□□□ -1.59
VPS41-213ENST00000485955 PRAMEF10O60809 474 aa5.14□□□□□ -1.59
VPS41-213ENST00000485955 RPLP2P05387 115 aaKnown RBP5.14□□□□□ -1.59
VPS41-213ENST00000485955 POU2F2P09086 479 aa5.14□□□□□ -1.59
VPS41-213ENST00000485955 LPOP22079 712 aaPredicted RBP5.14□□□□□ -1.59
VPS41-213ENST00000485955 PHKA1P46020 1223 aa5.14□□□□□ -1.59
VPS41-213ENST00000485955 FPGSQ05932 587 aa5.14□□□□□ -1.59
VPS41-213ENST00000485955 ZNF844Q08AG5 666 aa5.14□□□□□ -1.59
VPS41-213ENST00000485955 CCDC93Q567U6 631 aa5.14□□□□□ -1.59
VPS41-213ENST00000485955 ZNF362Q5T0B9 420 aaPredicted RBP5.14□□□□□ -1.59
VPS41-213ENST00000485955 SLC4A10Q6U841 1118 aa5.14□□□□□ -1.59
VPS41-213ENST00000485955 TSHZ1Q6ZSZ6 1077 aa5.14□□□□□ -1.59
VPS41-213ENST00000485955 USP45Q70EL2 814 aa5.14□□□□□ -1.59
VPS41-213ENST00000485955 CATIPQ7Z7H3 387 aa5.14□□□□□ -1.59
VPS41-213ENST00000485955 FAM177A1Q8N128 213 aaPredicted RBP5.14□□□□□ -1.59
VPS41-213ENST00000485955 C3orf20Q8ND61 904 aa5.14□□□□□ -1.59
VPS41-213ENST00000485955 SLC30A5Q8TAD4 765 aa5.14□□□□□ -1.59
VPS41-213ENST00000485955 FBXO41Q8TF61 875 aa5.14□□□□□ -1.59
VPS41-213ENST00000485955 TMEM125Q96AQ2 219 aa5.14□□□□□ -1.59
VPS41-213ENST00000485955 CHMP4CQ96CF2 233 aa5.14□□□□□ -1.59
VPS41-213ENST00000485955 C1orf43Q9BWL3 253 aa5.14□□□□□ -1.59
VPS41-213ENST00000485955 R3HDMLQ9H3Y0 253 aa5.14□□□□□ -1.59
VPS41-213ENST00000485955 KCTD5Q9NXV2 234 aa5.14□□□□□ -1.59
VPS41-213ENST00000485955 PRDX5P30044 214 aa5.13□□□□□ -1.59
VPS41-213ENST00000485955 RARRES1P49788 294 aa5.13□□□□□ -1.59
VPS41-213ENST00000485955 RPS7P62081 194 aaKnown RBP5.13□□□□□ -1.59
VPS41-213ENST00000485955 PSMC1P62191 440 aaKnown RBP5.13□□□□□ -1.59
VPS41-213ENST00000485955 EXOSC10Q01780 885 aaKnown RBP5.13□□□□□ -1.59
VPS41-213ENST00000485955 DYRK1AQ13627 763 aa5.13□□□□□ -1.59
VPS41-213ENST00000485955 TMEM240Q5SV17 173 aa5.13□□□□□ -1.59
VPS41-213ENST00000485955 VWA1Q6PCB0 445 aa5.13□□□□□ -1.59
VPS41-213ENST00000485955 CLNKQ7Z7G1 428 aa5.13□□□□□ -1.59
VPS41-213ENST00000485955 PRIMA1Q86XR5 153 aa5.13□□□□□ -1.59
VPS41-213ENST00000485955 ADGRG3Q86Y34 549 aa5.13□□□□□ -1.59
VPS41-213ENST00000485955 FAM90A1Q86YD7 464 aa5.13□□□□□ -1.59
VPS41-213ENST00000485955 FAM98AQ8NCA5 519 aaKnown RBP5.13□□□□□ -1.59
VPS41-213ENST00000485955 STAG1Q8WVM7 1258 aa5.13□□□□□ -1.59
VPS41-213ENST00000485955 LPIN2Q92539 896 aa5.13□□□□□ -1.59
VPS41-213ENST00000485955 BBC3Q96PG8 261 aaPredicted RBP5.13□□□□□ -1.59
VPS41-213ENST00000485955 BRD9Q9H8M2 597 aa5.13□□□□□ -1.59
VPS41-213ENST00000485955 MAN1C1Q9NR34 630 aa5.13□□□□□ -1.59
VPS41-213ENST00000485955 SIDT1Q9NXL6 827 aaKnown RBP5.13□□□□□ -1.59
VPS41-213ENST00000485955 AGAP1Q9UPQ3 857 aa5.13□□□□□ -1.59
VPS41-213ENST00000485955 ZBTB32Q9Y2Y4 487 aaPredicted RBP5.13□□□□□ -1.59
VPS41-213ENST00000485955 CCDC195A0A1B0GUA6 201 aa5.12□□□□□ -1.59
VPS41-213ENST00000485955 PPFIA2O75334 1257 aa5.12□□□□□ -1.59
VPS41-213ENST00000485955 IL33O95760 270 aa5.12□□□□□ -1.59
VPS41-213ENST00000485955 GJB1P08034 283 aa5.12□□□□□ -1.59
VPS41-213ENST00000485955 IBSPP21815 317 aaPredicted RBP5.12□□□□□ -1.59
VPS41-213ENST00000485955 SMARCA1P28370 1054 aa5.12□□□□□ -1.59
VPS41-213ENST00000485955 CYP2C19P33261 490 aa5.12□□□□□ -1.59
VPS41-213ENST00000485955 NEK2P51955 445 aa5.12□□□□□ -1.59
VPS41-213ENST00000485955 HNRNPMP52272 730 aaKnown RBP eCLIP5.12□□□□□ -1.59
VPS41-213ENST00000485955 MAP2K6P52564 334 aa5.12□□□□□ -1.59
VPS41-213ENST00000485955 HK3P52790 923 aa5.12□□□□□ -1.59
VPS41-213ENST00000485955 POU6F2P78424 691 aaPredicted RBP5.12□□□□□ -1.59
VPS41-213ENST00000485955 MRPS35P82673 323 aaKnown RBP5.12□□□□□ -1.59
VPS41-213ENST00000485955 NOGQ13253 232 aa5.12□□□□□ -1.59
VPS41-213ENST00000485955 STRIP1Q5VSL9 837 aa5.12□□□□□ -1.59
VPS41-213ENST00000485955 SLC30A10Q6XR72 485 aa5.12□□□□□ -1.59
VPS41-213ENST00000485955 ZBTB46Q86UZ6 589 aa5.12□□□□□ -1.59
VPS41-213ENST00000485955 ADGRG5Q8IZF4 528 aa5.12□□□□□ -1.59
VPS41-213ENST00000485955 SLC9A6Q92581 669 aa5.12□□□□□ -1.59
VPS41-213ENST00000485955 HSPBAP1Q96EW2 488 aa5.12□□□□□ -1.59
VPS41-213ENST00000485955 PDLIM2Q96JY6 352 aa5.12□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms