RNA–Protein interactions for RNA: ENST00000484203.5

PTCD3-215, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 2

Gene PTCD3, Length 928 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-215ENST00000484203 SMC3Q9UQE7 1217 aa6.79□□□□□ -1.32
PTCD3-215ENST00000484203 INPP5FQ9Y2H2 1132 aa6.79□□□□□ -1.32
PTCD3-215ENST00000484203 NR2E1Q9Y466 385 aa6.79□□□□□ -1.32
PTCD3-215ENST00000484203 MYH7BA7E2Y1 1941 aa6.78□□□□□ -1.32
PTCD3-215ENST00000484203 MICAL3Q7RTP6 2002 aa6.78□□□□□ -1.32
PTCD3-215ENST00000484203 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP6.78□□□□□ -1.32
PTCD3-215ENST00000484203 ARL5CA6NH57 179 aa6.78□□□□□ -1.32
PTCD3-215ENST00000484203 PRR33A8MZF0 331 aa6.78□□□□□ -1.32
PTCD3-215ENST00000484203 ACKR2O00590 384 aa6.78□□□□□ -1.32
PTCD3-215ENST00000484203 TBX10O75333 385 aa6.78□□□□□ -1.32
PTCD3-215ENST00000484203 MED24O75448 989 aa6.78□□□□□ -1.32
PTCD3-215ENST00000484203 URODP06132 367 aa6.78□□□□□ -1.32
PTCD3-215ENST00000484203 IL9P15248 144 aa6.78□□□□□ -1.32
PTCD3-215ENST00000484203 ARF4P18085 180 aaPredicted RBP6.78□□□□□ -1.32
PTCD3-215ENST00000484203 MTHFRP42898 656 aa6.78□□□□□ -1.32
PTCD3-215ENST00000484203 NRLP54845 237 aa6.78□□□□□ -1.32
PTCD3-215ENST00000484203 GPLD1P80108 840 aa6.78□□□□□ -1.32
PTCD3-215ENST00000484203 EHHADHQ08426 723 aa6.78□□□□□ -1.32
PTCD3-215ENST00000484203 ELAVL2Q12926 359 aaKnown RBP6.78□□□□□ -1.32
PTCD3-215ENST00000484203 GRIK3Q13003 919 aa6.78□□□□□ -1.32
PTCD3-215ENST00000484203 DMP1Q13316 513 aaPredicted RBP6.78□□□□□ -1.32
PTCD3-215ENST00000484203 PRPF4BQ13523 1007 aaKnown RBP6.78□□□□□ -1.32
PTCD3-215ENST00000484203 CBX2Q14781 532 aaPredicted RBP6.78□□□□□ -1.32
PTCD3-215ENST00000484203 HERC4Q5GLZ8 1057 aaPredicted RBP6.78□□□□□ -1.32
PTCD3-215ENST00000484203 ATAT1Q5SQI0 421 aa6.78□□□□□ -1.32
PTCD3-215ENST00000484203 UBXN11Q5T124 520 aa6.78□□□□□ -1.32
PTCD3-215ENST00000484203 LARP1BQ659C4 914 aaKnown RBP6.78□□□□□ -1.32
PTCD3-215ENST00000484203 KIAA1841Q6NSI8 718 aa6.78□□□□□ -1.32
PTCD3-215ENST00000484203 ANKRD54Q6NXT1 300 aa6.78□□□□□ -1.32
PTCD3-215ENST00000484203 XKR5Q6UX68 686 aa6.78□□□□□ -1.32
PTCD3-215ENST00000484203 AGMOQ6ZNB7 445 aa6.78□□□□□ -1.32
PTCD3-215ENST00000484203 ADGRD2Q7Z7M1 963 aa6.78□□□□□ -1.32
PTCD3-215ENST00000484203 CABP7Q86V35 215 aa6.78□□□□□ -1.32
PTCD3-215ENST00000484203 C4orf32Q8N8J7 132 aa6.78□□□□□ -1.32
PTCD3-215ENST00000484203 OR13H1Q8NG92 308 aa6.78□□□□□ -1.32
PTCD3-215ENST00000484203 ASAP3Q8TDY4 903 aa6.78□□□□□ -1.32
PTCD3-215ENST00000484203 SNX29Q8TEQ0 813 aa6.78□□□□□ -1.32
PTCD3-215ENST00000484203 HDAC7Q8WUI4 952 aa6.78□□□□□ -1.32
PTCD3-215ENST00000484203 SUSD6Q92537 303 aa6.78□□□□□ -1.32
PTCD3-215ENST00000484203 CDK5RAP3Q96JB5 506 aa6.78□□□□□ -1.32
PTCD3-215ENST00000484203 TBC1D32Q96NH3 1257 aa6.78□□□□□ -1.32
PTCD3-215ENST00000484203 RPS6KC1Q96S38 1066 aa6.78□□□□□ -1.32
PTCD3-215ENST00000484203 ZBP1Q9H171 429 aa6.78□□□□□ -1.32
PTCD3-215ENST00000484203 BHMT2Q9H2M3 363 aa6.78□□□□□ -1.32
PTCD3-215ENST00000484203 ADAM7Q9H2U9 754 aa6.78□□□□□ -1.32
PTCD3-215ENST00000484203 FZD8Q9H461 694 aa6.78□□□□□ -1.32
PTCD3-215ENST00000484203 NRDE2Q9H7Z3 1164 aa6.78□□□□□ -1.32
PTCD3-215ENST00000484203 MINDY3Q9H8M7 445 aa6.78□□□□□ -1.32
PTCD3-215ENST00000484203 TOPORSQ9NS56 1045 aaPredicted RBP6.78□□□□□ -1.32
PTCD3-215ENST00000484203 MKL2Q9ULH7 1088 aa6.78□□□□□ -1.32
PTCD3-215ENST00000484203 STARD13Q9Y3M8 1113 aa6.78□□□□□ -1.32
PTCD3-215ENST00000484203 USP15Q9Y4E8 981 aaPredicted RBP6.78□□□□□ -1.32
PTCD3-215ENST00000484203 IPPQ9Y573 584 aa6.78□□□□□ -1.32
PTCD3-215ENST00000484203 K7ERI5 159 aa6.77□□□□□ -1.33
PTCD3-215ENST00000484203 M0R082 166 aa6.77□□□□□ -1.33
PTCD3-215ENST00000484203 PER2O15055 1255 aa6.77□□□□□ -1.33
PTCD3-215ENST00000484203 CSPG5O95196 566 aa6.77□□□□□ -1.33
PTCD3-215ENST00000484203 SOD2P04179 222 aa6.77□□□□□ -1.33
PTCD3-215ENST00000484203 GUCY2CP25092 1073 aa6.77□□□□□ -1.33
PTCD3-215ENST00000484203 KLRC2P26717 231 aa6.77□□□□□ -1.33
PTCD3-215ENST00000484203 CA8P35219 290 aa6.77□□□□□ -1.33
PTCD3-215ENST00000484203 SOX18P35713 384 aa6.77□□□□□ -1.33
PTCD3-215ENST00000484203 SLC11A1P49279 550 aa6.77□□□□□ -1.33
PTCD3-215ENST00000484203 YARSP54577 528 aaKnown RBP6.77□□□□□ -1.33
PTCD3-215ENST00000484203 ATP2C1P98194 919 aaPredicted RBP6.77□□□□□ -1.33
PTCD3-215ENST00000484203 DLX2Q07687 328 aaPredicted RBP6.77□□□□□ -1.33
PTCD3-215ENST00000484203 DSC1Q08554 894 aa6.77□□□□□ -1.33
PTCD3-215ENST00000484203 KCNC3Q14003 757 aa6.77□□□□□ -1.33
PTCD3-215ENST00000484203 CLUL1Q15846 466 aa6.77□□□□□ -1.33
PTCD3-215ENST00000484203 KYAT1Q16773 422 aa6.77□□□□□ -1.33
PTCD3-215ENST00000484203 PSAPL1Q6NUJ1 521 aa6.77□□□□□ -1.33
PTCD3-215ENST00000484203 RTL10Q7L3V2 364 aa6.77□□□□□ -1.33
PTCD3-215ENST00000484203 COLGALT2Q8IYK4 626 aa6.77□□□□□ -1.33
PTCD3-215ENST00000484203 SMG8Q8ND04 991 aaKnown RBP6.77□□□□□ -1.33
PTCD3-215ENST00000484203 ZNF417Q8TAU3 575 aa6.77□□□□□ -1.33
PTCD3-215ENST00000484203 NUDT8Q8WV74 236 aa6.77□□□□□ -1.33
PTCD3-215ENST00000484203 LPPQ93052 612 aa6.77□□□□□ -1.33
PTCD3-215ENST00000484203 MFSD14AQ96MC6 490 aa6.77□□□□□ -1.33
PTCD3-215ENST00000484203 NSUN5Q96P11 429 aaKnown RBP6.77□□□□□ -1.33
PTCD3-215ENST00000484203 ZNF587Q96SQ5 575 aaPredicted RBP6.77□□□□□ -1.33
PTCD3-215ENST00000484203 GAD1Q99259 594 aa6.77□□□□□ -1.33
PTCD3-215ENST00000484203 PRRX2Q99811 253 aa6.77□□□□□ -1.33
PTCD3-215ENST00000484203 RHOBTB2Q9BYZ6 727 aa6.77□□□□□ -1.33
PTCD3-215ENST00000484203 GBP3Q9H0R5 595 aa6.77□□□□□ -1.33
PTCD3-215ENST00000484203 S1PR5Q9H228 398 aa6.77□□□□□ -1.33
PTCD3-215ENST00000484203 DDX19AQ9NUU7 478 aaKnown RBP6.77□□□□□ -1.33
PTCD3-215ENST00000484203 SLC38A7Q9NVC3 462 aa6.77□□□□□ -1.33
PTCD3-215ENST00000484203 PARP2Q9UGN5 583 aa6.77□□□□□ -1.33
PTCD3-215ENST00000484203 BARX2Q9UMQ3 279 aaPredicted RBP6.77□□□□□ -1.33
PTCD3-215ENST00000484203 HCFC2Q9Y5Z7 792 aa6.77□□□□□ -1.33
PTCD3-215ENST00000484203 KAT6AQ92794 2004 aa6.77□□□□□ -1.33
PTCD3-215ENST00000484203 SF3B1O75533 1304 aaKnown RBP eCLIP6.76□□□□□ -1.334e-6■■■■■ 34.5
PTCD3-215ENST00000484203 MYO7AQ13402 2215 aa6.76□□□□□ -1.33
PTCD3-215ENST00000484203 HIDE1A8MVS5 230 aa6.76□□□□□ -1.33
PTCD3-215ENST00000484203 LOC730098B7Z3J9 87 aa6.76□□□□□ -1.33
PTCD3-215ENST00000484203 J3QW42 95 aa6.76□□□□□ -1.33
PTCD3-215ENST00000484203 NRP1O14786 923 aa6.76□□□□□ -1.33
PTCD3-215ENST00000484203 LINC01565O15544 149 aa6.76□□□□□ -1.33
PTCD3-215ENST00000484203 TRAPPC3O43617 180 aa6.76□□□□□ -1.33
PTCD3-215ENST00000484203 CLASP2O75122 1294 aaKnown RBP6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms