RNA–Protein interactions for RNA: ENST00000476625.5

HDAC6-219, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 967 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-219ENST00000476625 SUSD3Q96L08 255 aa13.1□□□□□ -0.31
HDAC6-219ENST00000476625 MKNK1Q9BUB5 465 aa13.1□□□□□ -0.31
HDAC6-219ENST00000476625 SMG9Q9H0W8 520 aaKnown RBP13.1□□□□□ -0.31
HDAC6-219ENST00000476625 SMOC1Q9H4F8 434 aa13.1□□□□□ -0.31
HDAC6-219ENST00000476625 SLITRK6Q9H5Y7 841 aa13.1□□□□□ -0.31
HDAC6-219ENST00000476625 GTSE1Q9NYZ3 720 aa13.1□□□□□ -0.31
HDAC6-219ENST00000476625 CNTN3Q9P232 1028 aa13.1□□□□□ -0.31
HDAC6-219ENST00000476625 ANKFY1Q9P2R3 1169 aa13.1□□□□□ -0.31
HDAC6-219ENST00000476625 ZNF263O14978 683 aa13.09□□□□□ -0.31
HDAC6-219ENST00000476625 CXCL8P10145 99 aa13.09□□□□□ -0.31
HDAC6-219ENST00000476625 PROZP22891 400 aa13.09□□□□□ -0.31
HDAC6-219ENST00000476625 TNFSF9P41273 254 aa13.09□□□□□ -0.31
HDAC6-219ENST00000476625 EFNA5P52803 228 aa13.09□□□□□ -0.31
HDAC6-219ENST00000476625 CACNB1Q02641 598 aaPredicted RBP13.09□□□□□ -0.31
HDAC6-219ENST00000476625 TNK2Q07912 1038 aa13.09□□□□□ -0.31
HDAC6-219ENST00000476625 PON2Q15165 354 aa13.09□□□□□ -0.31
HDAC6-219ENST00000476625 SF3A2Q15428 464 aaKnown RBP13.09□□□□□ -0.31
HDAC6-219ENST00000476625 CYP4A22Q5TCH4 519 aa13.09□□□□□ -0.31
HDAC6-219ENST00000476625 ZNF280DQ6N043 979 aa13.09□□□□□ -0.31
HDAC6-219ENST00000476625 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.09□□□□□ -0.31
HDAC6-219ENST00000476625 CCDC83Q8IWF9 413 aa13.09□□□□□ -0.31
HDAC6-219ENST00000476625 ERMNQ8TAM6 284 aa13.09□□□□□ -0.31
HDAC6-219ENST00000476625 SNX29Q8TEQ0 813 aa13.09□□□□□ -0.31
HDAC6-219ENST00000476625 ZNF512Q96ME7 567 aaPredicted RBP13.09□□□□□ -0.31
HDAC6-219ENST00000476625 ACAP3Q96P50 834 aa13.09□□□□□ -0.31
HDAC6-219ENST00000476625 ASAH2Q9NR71 780 aa13.09□□□□□ -0.31
HDAC6-219ENST00000476625 RAB23Q9ULC3 237 aa13.09□□□□□ -0.31
HDAC6-219ENST00000476625 NPHP3-ACAD11A0A0J9YXS1 232 aa13.08□□□□□ -0.32
HDAC6-219ENST00000476625 H7C4K7 107 aa13.08□□□□□ -0.32
HDAC6-219ENST00000476625 MAN2B1O00754 1011 aa13.08□□□□□ -0.32
HDAC6-219ENST00000476625 ZNF197O14709 1029 aa13.08□□□□□ -0.32
HDAC6-219ENST00000476625 SLC30A4O14863 429 aa13.08□□□□□ -0.32
HDAC6-219ENST00000476625 SYN3O14994 580 aa13.08□□□□□ -0.32
HDAC6-219ENST00000476625 PRAMEF12O95522 483 aa13.08□□□□□ -0.32
HDAC6-219ENST00000476625 KCNE1P15382 129 aa13.08□□□□□ -0.32
HDAC6-219ENST00000476625 CXCL12P48061 93 aa13.08□□□□□ -0.32
HDAC6-219ENST00000476625 CCR3P51677 355 aa13.08□□□□□ -0.32
HDAC6-219ENST00000476625 EPHA5P54756 1037 aa13.08□□□□□ -0.32
HDAC6-219ENST00000476625 CYP4F8P98187 520 aa13.08□□□□□ -0.32
HDAC6-219ENST00000476625 DUSP4Q13115 394 aa13.08□□□□□ -0.32
HDAC6-219ENST00000476625 PTGDRQ13258 359 aa13.08□□□□□ -0.32
HDAC6-219ENST00000476625 MPZL3Q6UWV2 235 aa13.08□□□□□ -0.32
HDAC6-219ENST00000476625 MFSD6LQ8IWD5 586 aa13.08□□□□□ -0.32
HDAC6-219ENST00000476625 FAM160A2Q8N612 972 aaPredicted RBP13.08□□□□□ -0.32
HDAC6-219ENST00000476625 GPR161Q8N6U8 529 aaKnown RBP13.08□□□□□ -0.32
HDAC6-219ENST00000476625 STKLD1Q8NE28 680 aa13.08□□□□□ -0.32
HDAC6-219ENST00000476625 KIFAP3Q92845 792 aa13.08□□□□□ -0.32
HDAC6-219ENST00000476625 PLIN2Q99541 437 aa13.08□□□□□ -0.32
HDAC6-219ENST00000476625 TCHPQ9BT92 498 aa13.08□□□□□ -0.32
HDAC6-219ENST00000476625 MRPL4Q9BYD3 311 aaKnown RBP13.08□□□□□ -0.32
HDAC6-219ENST00000476625 KMT5AQ9NQR1 393 aa13.08□□□□□ -0.32
HDAC6-219ENST00000476625 TOPORSQ9NS56 1045 aaPredicted RBP13.08□□□□□ -0.32
HDAC6-219ENST00000476625 ARHGAP28Q9P2N2 729 aa13.08□□□□□ -0.32
HDAC6-219ENST00000476625 LRWD1Q9UFC0 647 aa13.08□□□□□ -0.32
HDAC6-219ENST00000476625 AFF4Q9UHB7 1163 aaKnown RBP13.08□□□□□ -0.32
HDAC6-219ENST00000476625 PCDHB8Q9UN66 801 aa13.08□□□□□ -0.32
HDAC6-219ENST00000476625 ZNF638Q14966 1978 aaKnown RBP13.07□□□□□ -0.32
HDAC6-219ENST00000476625 SPTBN2O15020 2390 aa13.07□□□□□ -0.32
HDAC6-219ENST00000476625 SPECC1L-ADORA2AF8WAN1 911 aa13.07□□□□□ -0.32
HDAC6-219ENST00000476625 AXIN1O15169 862 aa13.07□□□□□ -0.32
HDAC6-219ENST00000476625 EXTL3O43909 919 aa13.07□□□□□ -0.32
HDAC6-219ENST00000476625 MCF2P10911 925 aa13.07□□□□□ -0.32
HDAC6-219ENST00000476625 TOB1P50616 345 aaPredicted RBP13.07□□□□□ -0.32
HDAC6-219ENST00000476625 NEK4P51957 841 aa13.07□□□□□ -0.32
HDAC6-219ENST00000476625 KPNA1P52294 538 aaPredicted RBP13.07□□□□□ -0.32
HDAC6-219ENST00000476625 NAIF1Q69YI7 327 aaPredicted RBP13.07□□□□□ -0.32
HDAC6-219ENST00000476625 IQCEQ6IPM2 695 aa13.07□□□□□ -0.32
HDAC6-219ENST00000476625 GAREM2Q75VX8 874 aa13.07□□□□□ -0.32
HDAC6-219ENST00000476625 RTL10Q7L3V2 364 aa13.07□□□□□ -0.32
HDAC6-219ENST00000476625 ARID3BQ8IVW6 561 aaPredicted RBP13.07□□□□□ -0.32
HDAC6-219ENST00000476625 ELMOD1Q8N336 334 aa13.07□□□□□ -0.32
HDAC6-219ENST00000476625 CELF5Q8N6W0 485 aaKnown RBP13.07□□□□□ -0.32
HDAC6-219ENST00000476625 ATAD1Q8NBU5 361 aa13.07□□□□□ -0.32
HDAC6-219ENST00000476625 NETO1Q8TDF5 533 aa13.07□□□□□ -0.32
HDAC6-219ENST00000476625 CSGALNACT1Q8TDX6 532 aa13.07□□□□□ -0.32
HDAC6-219ENST00000476625 DEPDC1BQ8WUY9 529 aa13.07□□□□□ -0.32
HDAC6-219ENST00000476625 LPIN3Q9BQK8 851 aa13.07□□□□□ -0.32
HDAC6-219ENST00000476625 MMTAG2Q9BU76 263 aaKnown RBP13.07□□□□□ -0.32
HDAC6-219ENST00000476625 FAM126AQ9BYI3 521 aaPredicted RBP13.07□□□□□ -0.32
HDAC6-219ENST00000476625 SLC38A7Q9NVC3 462 aa13.07□□□□□ -0.32
HDAC6-219ENST00000476625 PCDHB6Q9Y5E3 794 aa13.07□□□□□ -0.32
HDAC6-219ENST00000476625 SCN1AP35498 2009 aa13.06□□□□□ -0.32
HDAC6-219ENST00000476625 CACNA1BQ00975 2339 aa13.06□□□□□ -0.32
HDAC6-219ENST00000476625 MICAL2O94851 1124 aa13.06□□□□□ -0.32
HDAC6-219ENST00000476625 SEC24BO95487 1268 aa13.06□□□□□ -0.32
HDAC6-219ENST00000476625 RETP07949 1114 aa13.06□□□□□ -0.32
HDAC6-219ENST00000476625 CTHP32929 405 aa13.06□□□□□ -0.32
HDAC6-219ENST00000476625 FXR2P51116 673 aaKnown RBP eCLIP13.06□□□□□ -0.32
HDAC6-219ENST00000476625 ANKRD1Q15327 319 aa13.06□□□□□ -0.32
HDAC6-219ENST00000476625 ZRSR1Q15695 479 aaKnown RBP13.06□□□□□ -0.32
HDAC6-219ENST00000476625 TPGS2Q68CL5 300 aa13.06□□□□□ -0.32
HDAC6-219ENST00000476625 HAUS3Q68CZ6 603 aa13.06□□□□□ -0.32
HDAC6-219ENST00000476625 RINT1Q6NUQ1 792 aa13.06□□□□□ -0.32
HDAC6-219ENST00000476625 YAF2Q8IY57 180 aa13.06□□□□□ -0.32
HDAC6-219ENST00000476625 BEST2Q8NFU1 509 aa13.06□□□□□ -0.32
HDAC6-219ENST00000476625 CHFRQ96EP1 664 aa13.06□□□□□ -0.32
HDAC6-219ENST00000476625 CHAMP1Q96JM3 812 aa13.06□□□□□ -0.32
HDAC6-219ENST00000476625 C8orf76Q96K31 380 aa13.06□□□□□ -0.32
HDAC6-219ENST00000476625 ARRDC1-AS1Q9H2J1 176 aa13.06□□□□□ -0.32
HDAC6-219ENST00000476625 TMEM134Q9H6X4 195 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms