RNA–Protein interactions for RNA: ENST00000474665.1

LIMD1-204, Transcript of LIM domains containing 1, humanhuman

TSL 3

Gene LIMD1, Length 513 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-204ENST00000474665 CCDC127Q96BQ5 260 aa7.57□□□□□ -1.2
LIMD1-204ENST00000474665 FAM212AQ96EL1 285 aa7.57□□□□□ -1.2
LIMD1-204ENST00000474665 KIF12Q96FN5 646 aa7.57□□□□□ -1.2
LIMD1-204ENST00000474665 IGSF21Q96ID5 467 aa7.57□□□□□ -1.2
LIMD1-204ENST00000474665 RPGRIP1Q96KN7 1286 aa7.57□□□□□ -1.2
LIMD1-204ENST00000474665 MRPL9Q9BYD2 267 aaKnown RBP7.57□□□□□ -1.2
LIMD1-204ENST00000474665 HSD3B7Q9H2F3 369 aa7.57□□□□□ -1.2
LIMD1-204ENST00000474665 ASB7Q9H672 318 aa7.57□□□□□ -1.2
LIMD1-204ENST00000474665 INTS13Q9NVM9 706 aa7.57□□□□□ -1.2
LIMD1-204ENST00000474665 RNF216Q9NWF9 866 aaPredicted RBP7.57□□□□□ -1.2
LIMD1-204ENST00000474665 RWDD2AQ9UIY3 292 aa7.57□□□□□ -1.2
LIMD1-204ENST00000474665 PRG3Q9Y2Y8 225 aaPredicted RBP7.57□□□□□ -1.2
LIMD1-204ENST00000474665 C2CD2Q9Y426 696 aa7.57□□□□□ -1.2
LIMD1-204ENST00000474665 ANKRD11Q6UB99 2663 aaPredicted RBP7.57□□□□□ -1.2
LIMD1-204ENST00000474665 SYCE3A1L190 88 aa7.56□□□□□ -1.2
LIMD1-204ENST00000474665 LRRIQ3A6PVS8 624 aaPredicted RBP7.56□□□□□ -1.2
LIMD1-204ENST00000474665 H3BNC9 293 aa7.56□□□□□ -1.2
LIMD1-204ENST00000474665 PIRO00625 290 aa7.56□□□□□ -1.2
LIMD1-204ENST00000474665 MAPK13O15264 365 aa7.56□□□□□ -1.2
LIMD1-204ENST00000474665 SPTLC1O15269 473 aa7.56□□□□□ -1.2
LIMD1-204ENST00000474665 LRRN2O75325 713 aa7.56□□□□□ -1.2
LIMD1-204ENST00000474665 FGF18O76093 207 aa7.56□□□□□ -1.2
LIMD1-204ENST00000474665 KIF20AO95235 890 aa7.56□□□□□ -1.2
LIMD1-204ENST00000474665 KIF4AO95239 1232 aa7.56□□□□□ -1.2
LIMD1-204ENST00000474665 IL18RAPO95256 599 aa7.56□□□□□ -1.2
LIMD1-204ENST00000474665 LMNAP02545 664 aaKnown RBP7.56□□□□□ -1.2
LIMD1-204ENST00000474665 LAG3P18627 525 aa7.56□□□□□ -1.2
LIMD1-204ENST00000474665 CYP3A5P20815 502 aa7.56□□□□□ -1.2
LIMD1-204ENST00000474665 ERCC5P28715 1186 aaPredicted RBP7.56□□□□□ -1.2
LIMD1-204ENST00000474665 LRPAP1P30533 357 aa7.56□□□□□ -1.2
LIMD1-204ENST00000474665 CTNNB1P35222 781 aa7.56□□□□□ -1.2
LIMD1-204ENST00000474665 AARSP49588 968 aaKnown RBP eCLIP7.56□□□□□ -1.2
LIMD1-204ENST00000474665 ERVFC1P60507 584 aa7.56□□□□□ -1.2
LIMD1-204ENST00000474665 FKBP3Q00688 224 aaKnown RBP7.56□□□□□ -1.2
LIMD1-204ENST00000474665 RNASELQ05823 741 aaKnown RBP7.56□□□□□ -1.2
LIMD1-204ENST00000474665 PPP2R3AQ06190 1150 aa7.56□□□□□ -1.2
LIMD1-204ENST00000474665 PPP3CAQ08209 521 aa7.56□□□□□ -1.2
LIMD1-204ENST00000474665 TMEM132DQ14C87 1099 aa7.56□□□□□ -1.2
LIMD1-204ENST00000474665 NCAPHQ15003 741 aa7.56□□□□□ -1.2
LIMD1-204ENST00000474665 SKOR2Q2VWA4 1001 aaPredicted RBP7.56□□□□□ -1.2
LIMD1-204ENST00000474665 C9orf57Q5W0N0 161 aa7.56□□□□□ -1.2
LIMD1-204ENST00000474665 CEP135Q66GS9 1140 aa7.56□□□□□ -1.2
LIMD1-204ENST00000474665 C15orf39Q6ZRI6 1047 aa7.56□□□□□ -1.2
LIMD1-204ENST00000474665 CD302Q8IX05 232 aa7.56□□□□□ -1.2
LIMD1-204ENST00000474665 TMC2Q8TDI7 906 aa7.56□□□□□ -1.2
LIMD1-204ENST00000474665 RSPH1Q8WYR4 309 aa7.56□□□□□ -1.2
LIMD1-204ENST00000474665 B3GALT6Q96L58 329 aa7.56□□□□□ -1.2
LIMD1-204ENST00000474665 ZNF558Q96NG5 402 aa7.56□□□□□ -1.2
LIMD1-204ENST00000474665 RPS6KC1Q96S38 1066 aa7.56□□□□□ -1.2
LIMD1-204ENST00000474665 HINFPQ9BQA5 517 aa7.56□□□□□ -1.2
LIMD1-204ENST00000474665 TMEM175Q9BSA9 504 aa7.56□□□□□ -1.2
LIMD1-204ENST00000474665 PLVAPQ9BX97 442 aa7.56□□□□□ -1.2
LIMD1-204ENST00000474665 GPR62Q9BZJ7 368 aa7.56□□□□□ -1.2
LIMD1-204ENST00000474665 MTMR12Q9C0I1 747 aa7.56□□□□□ -1.2
LIMD1-204ENST00000474665 DNAJC25Q9H1X3 360 aa7.56□□□□□ -1.2
LIMD1-204ENST00000474665 KIAA1586Q9HCI6 787 aa7.56□□□□□ -1.2
LIMD1-204ENST00000474665 DERAQ9Y315 318 aa7.56□□□□□ -1.2
LIMD1-204ENST00000474665 SPTBN2O15020 2390 aa7.56□□□□□ -1.2
LIMD1-204ENST00000474665 GPR179Q6PRD1 2367 aa7.56□□□□□ -1.2
LIMD1-204ENST00000474665 TSC2P49815 1807 aa7.55□□□□□ -1.2
LIMD1-204ENST00000474665 BICDL2A1A5D9 508 aa7.55□□□□□ -1.2
LIMD1-204ENST00000474665 TMEM189-UBE2V1I3L0A0 370 aa7.55□□□□□ -1.2
LIMD1-204ENST00000474665 I3L4J1 428 aa7.55□□□□□ -1.2
LIMD1-204ENST00000474665 PODXLO00592 558 aa7.55□□□□□ -1.2
LIMD1-204ENST00000474665 CETN3O15182 167 aa7.55□□□□□ -1.2
LIMD1-204ENST00000474665 NCK2O43639 380 aa7.55□□□□□ -1.2
LIMD1-204ENST00000474665 LILRB3O75022 631 aa7.55□□□□□ -1.2
LIMD1-204ENST00000474665 CSPG5O95196 566 aa7.55□□□□□ -1.2
LIMD1-204ENST00000474665 VNN1O95497 513 aa7.55□□□□□ -1.2
LIMD1-204ENST00000474665 CST3P01034 146 aaPredicted RBP7.55□□□□□ -1.2
LIMD1-204ENST00000474665 C4BPAP04003 597 aaKnown RBP7.55□□□□□ -1.2
LIMD1-204ENST00000474665 ALDH2P05091 517 aa7.55□□□□□ -1.2
LIMD1-204ENST00000474665 RB1P06400 928 aa7.55□□□□□ -1.2
LIMD1-204ENST00000474665 TRIM49P0CI25 452 aa7.55□□□□□ -1.2
LIMD1-204ENST00000474665 TRIM49CP0CI26 452 aa7.55□□□□□ -1.2
LIMD1-204ENST00000474665 DLATP10515 647 aaKnown RBP7.55□□□□□ -1.2
LIMD1-204ENST00000474665 PTMSP20962 102 aa7.55□□□□□ -1.2
LIMD1-204ENST00000474665 RPL13P26373 211 aaKnown RBP7.55□□□□□ -1.2
LIMD1-204ENST00000474665 RPL9P32969 192 aaKnown RBP7.55□□□□□ -1.2
LIMD1-204ENST00000474665 PSMC2P35998 433 aaKnown RBP7.55□□□□□ -1.2
LIMD1-204ENST00000474665 PPP1R2P41236 205 aa7.55□□□□□ -1.2
LIMD1-204ENST00000474665 BRCC3P46736 316 aa7.55□□□□□ -1.2
LIMD1-204ENST00000474665 OR1G1P47890 313 aa7.55□□□□□ -1.2
LIMD1-204ENST00000474665 ALDH7A1P49419 539 aaKnown RBP7.55□□□□□ -1.2
LIMD1-204ENST00000474665 ATXN1P54253 815 aaKnown RBP7.55□□□□□ -1.2
LIMD1-204ENST00000474665 TFAMQ00059 246 aaKnown RBP7.55□□□□□ -1.2
LIMD1-204ENST00000474665 PLCB3Q01970 1234 aa7.55□□□□□ -1.2
LIMD1-204ENST00000474665 STIM1Q13586 685 aa7.55□□□□□ -1.2
LIMD1-204ENST00000474665 HSP90AA2PQ14568 343 aaPredicted RBP7.55□□□□□ -1.2
LIMD1-204ENST00000474665 STX1AQ16623 288 aa7.55□□□□□ -1.2
LIMD1-204ENST00000474665 PTPN21Q16825 1174 aa7.55□□□□□ -1.2
LIMD1-204ENST00000474665 ANO6Q4KMQ2 910 aa7.55□□□□□ -1.2
LIMD1-204ENST00000474665 TDRD10Q5VZ19 366 aaKnown RBP7.55□□□□□ -1.2
LIMD1-204ENST00000474665 FILIP1Q7Z7B0 1213 aa7.55□□□□□ -1.2
LIMD1-204ENST00000474665 WDR49Q8IV35 697 aa7.55□□□□□ -1.2
LIMD1-204ENST00000474665 FAM186BQ8IYM0 893 aa7.55□□□□□ -1.2
LIMD1-204ENST00000474665 CSGALNACT2Q8N6G5 542 aa7.55□□□□□ -1.2
LIMD1-204ENST00000474665 HASPINQ8TF76 798 aa7.55□□□□□ -1.2
LIMD1-204ENST00000474665 SLC35C1Q96A29 364 aa7.55□□□□□ -1.2
LIMD1-204ENST00000474665 ELMO3Q96BJ8 720 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms