RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 GNG11P61952 73 aa13.73□□□□□ -0.21
VPS13D-205ENST00000473099 TNNC1P63316 161 aa13.73□□□□□ -0.21
VPS13D-205ENST00000473099 CDR2Q01850 454 aa13.73□□□□□ -0.21
VPS13D-205ENST00000473099 IFI16Q16666 785 aaKnown RBP13.73□□□□□ -0.21
VPS13D-205ENST00000473099 H2AFVQ71UI9 128 aa13.73□□□□□ -0.21
VPS13D-205ENST00000473099 LRRC8DQ7L1W4 858 aa13.73□□□□□ -0.21
VPS13D-205ENST00000473099 UBR7Q8N806 425 aa13.73□□□□□ -0.21
VPS13D-205ENST00000473099 CXorf38Q8TB03 319 aa13.73□□□□□ -0.21
VPS13D-205ENST00000473099 U2AF1L4Q8WU68 220 aaKnown RBP13.73□□□□□ -0.21
VPS13D-205ENST00000473099 HPDLQ96IR7 371 aa13.73□□□□□ -0.21
VPS13D-205ENST00000473099 FAM84AQ96KN4 292 aa13.73□□□□□ -0.21
VPS13D-205ENST00000473099 TOX2Q96NM4 488 aa13.73□□□□□ -0.21
VPS13D-205ENST00000473099 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.73□□□□□ -0.21
VPS13D-205ENST00000473099 NOCTQ9UK39 431 aaKnown RBP13.73□□□□□ -0.21
VPS13D-205ENST00000473099 A0A0U1RQF3 1178 aa13.72□□□□□ -0.21
VPS13D-205ENST00000473099 SMIM28A0A1B0GU29 152 aa13.72□□□□□ -0.21
VPS13D-205ENST00000473099 ANO9A1A5B4 782 aa13.72□□□□□ -0.21
VPS13D-205ENST00000473099 DCDC2CA8MYV0 355 aa13.72□□□□□ -0.21
VPS13D-205ENST00000473099 DDX3XO00571 662 aaKnown RBP eCLIP13.72□□□□□ -0.21
VPS13D-205ENST00000473099 PAX3P23760 479 aa13.72□□□□□ -0.21
VPS13D-205ENST00000473099 AKAP5P24588 427 aa13.72□□□□□ -0.21
VPS13D-205ENST00000473099 ASPAP45381 313 aa13.72□□□□□ -0.21
VPS13D-205ENST00000473099 ZNF132P52740 706 aa13.72□□□□□ -0.21
VPS13D-205ENST00000473099 WDR72Q3MJ13 1102 aa13.72□□□□□ -0.21
VPS13D-205ENST00000473099 TMEM270Q6UE05 265 aa13.72□□□□□ -0.21
VPS13D-205ENST00000473099 ANKRD33Q7Z3H0 272 aa13.72□□□□□ -0.21
VPS13D-205ENST00000473099 SLC47A2Q86VL8 602 aa13.72□□□□□ -0.21
VPS13D-205ENST00000473099 GLYCTKQ8IVS8 523 aa13.72□□□□□ -0.21
VPS13D-205ENST00000473099 RPUSD2Q8IZ73 545 aaKnown RBP13.72□□□□□ -0.21
VPS13D-205ENST00000473099 RBBP8NLQ8NC74 664 aaPredicted RBP13.72□□□□□ -0.21
VPS13D-205ENST00000473099 TRIM58Q8NG06 486 aa13.72□□□□□ -0.21
VPS13D-205ENST00000473099 APBB2Q92870 758 aa13.72□□□□□ -0.21
VPS13D-205ENST00000473099 SECISBP2LQ93073 1101 aaKnown RBP13.72□□□□□ -0.21
VPS13D-205ENST00000473099 ZMAT2Q96NC0 199 aaKnown RBP13.72□□□□□ -0.21
VPS13D-205ENST00000473099 ARID3AQ99856 593 aa13.72□□□□□ -0.21
VPS13D-205ENST00000473099 CISHQ9NSE2 258 aa13.72□□□□□ -0.21
VPS13D-205ENST00000473099 SEPT11Q9NVA2 429 aaKnown RBP13.72□□□□□ -0.21
VPS13D-205ENST00000473099 RNF216Q9NWF9 866 aaPredicted RBP13.72□□□□□ -0.21
VPS13D-205ENST00000473099 GUCA1BQ9UMX6 200 aa13.72□□□□□ -0.21
VPS13D-205ENST00000473099 FNDC1Q4ZHG4 1894 aaPredicted RBP13.72□□□□□ -0.21
VPS13D-205ENST00000473099 CENPFP49454 3210 aa13.71□□□□□ -0.21
VPS13D-205ENST00000473099 UMODL1Q5DID0 1318 aa13.71□□□□□ -0.21
VPS13D-205ENST00000473099 A0A0A6YYK5 440 aaPredicted RBP13.71□□□□□ -0.21
VPS13D-205ENST00000473099 ANKRD62A6NC57 917 aa13.71□□□□□ -0.21
VPS13D-205ENST00000473099 RTN2O75298 545 aa13.71□□□□□ -0.21
VPS13D-205ENST00000473099 TACC1O75410 805 aa13.71□□□□□ -0.21
VPS13D-205ENST00000473099 EOMESO95936 686 aa13.71□□□□□ -0.21
VPS13D-205ENST00000473099 PAEPP09466 180 aa13.71□□□□□ -0.21
VPS13D-205ENST00000473099 LRPAP1P30533 357 aa13.71□□□□□ -0.21
VPS13D-205ENST00000473099 GNA15P30679 374 aa13.71□□□□□ -0.21
VPS13D-205ENST00000473099 CASQ1P31415 396 aa13.71□□□□□ -0.21
VPS13D-205ENST00000473099 SV2CQ496J9 727 aa13.71□□□□□ -0.21
VPS13D-205ENST00000473099 C9orf57Q5W0N0 161 aa13.71□□□□□ -0.21
VPS13D-205ENST00000473099 TRAF7Q6Q0C0 670 aa13.71□□□□□ -0.21
VPS13D-205ENST00000473099 SYT10Q6XYQ8 523 aa13.71□□□□□ -0.21
VPS13D-205ENST00000473099 SLC39A5Q6ZMH5 540 aa13.71□□□□□ -0.21
VPS13D-205ENST00000473099 NOP9Q86U38 636 aaKnown RBP13.71□□□□□ -0.21
VPS13D-205ENST00000473099 GPIHBP1Q8IV16 184 aa13.71□□□□□ -0.21
VPS13D-205ENST00000473099 LNX1Q8TBB1 728 aaPredicted RBP13.71□□□□□ -0.21
VPS13D-205ENST00000473099 CTNNBL1Q8WYA6 563 aaPredicted RBP13.71□□□□□ -0.21
VPS13D-205ENST00000473099 ALS2CR12Q96Q35 445 aa13.71□□□□□ -0.21
VPS13D-205ENST00000473099 ADAM2Q99965 735 aa13.71□□□□□ -0.21
VPS13D-205ENST00000473099 LACRTQ9GZZ8 138 aa13.71□□□□□ -0.21
VPS13D-205ENST00000473099 RGS18Q9NS28 235 aa13.71□□□□□ -0.21
VPS13D-205ENST00000473099 NXF1Q9UBU9 619 aaKnown RBP13.71□□□□□ -0.21
VPS13D-205ENST00000473099 DNAI1Q9UI46 699 aa13.71□□□□□ -0.21
VPS13D-205ENST00000473099 PIRO00625 290 aa13.7□□□□□ -0.22
VPS13D-205ENST00000473099 MED7O43513 233 aa13.7□□□□□ -0.22
VPS13D-205ENST00000473099 MYCP01106 439 aaPredicted RBP13.7□□□□□ -0.22
VPS13D-205ENST00000473099 THP07101 528 aa13.7□□□□□ -0.22
VPS13D-205ENST00000473099 FAM163BP0C2L3 166 aa13.7□□□□□ -0.22
VPS13D-205ENST00000473099 TMEM253P0C7T8 217 aa13.7□□□□□ -0.22
VPS13D-205ENST00000473099 COL6A1P12109 1028 aa13.7□□□□□ -0.22
VPS13D-205ENST00000473099 GJA8P48165 433 aa13.7□□□□□ -0.22
VPS13D-205ENST00000473099 TAF6P49848 677 aa13.7□□□□□ -0.22
VPS13D-205ENST00000473099 FMO1Q01740 532 aa13.7□□□□□ -0.22
VPS13D-205ENST00000473099 TUBB2AQ13885 445 aa13.7□□□□□ -0.22
VPS13D-205ENST00000473099 ZNF569Q5MCW4 686 aa13.7□□□□□ -0.22
VPS13D-205ENST00000473099 SLC24A5Q71RS6 500 aa13.7□□□□□ -0.22
VPS13D-205ENST00000473099 OLIG1Q8TAK6 271 aa13.7□□□□□ -0.22
VPS13D-205ENST00000473099 SLC20A1Q8WUM9 679 aa13.7□□□□□ -0.22
VPS13D-205ENST00000473099 RSPH1Q8WYR4 309 aa13.7□□□□□ -0.22
VPS13D-205ENST00000473099 DDX1Q92499 740 aaKnown RBP13.7□□□□□ -0.22
VPS13D-205ENST00000473099 ZNF592Q92610 1267 aa13.7□□□□□ -0.22
VPS13D-205ENST00000473099 TRIM11Q96F44 468 aa13.7□□□□□ -0.22
VPS13D-205ENST00000473099 NOX5Q96PH1 765 aa13.7□□□□□ -0.22
VPS13D-205ENST00000473099 PPP1R10Q96QC0 940 aaKnown RBP13.7□□□□□ -0.22
VPS13D-205ENST00000473099 TUBB2BQ9BVA1 445 aa13.7□□□□□ -0.22
VPS13D-205ENST00000473099 ISCUQ9H1K1 167 aa13.7□□□□□ -0.22
VPS13D-205ENST00000473099 PDCL3Q9H2J4 239 aa13.7□□□□□ -0.22
VPS13D-205ENST00000473099 RNF39Q9H2S5 420 aa13.7□□□□□ -0.22
VPS13D-205ENST00000473099 RSAD1Q9HA92 442 aa13.7□□□□□ -0.22
VPS13D-205ENST00000473099 KLK14Q9P0G3 267 aa13.7□□□□□ -0.22
VPS13D-205ENST00000473099 TUBGCP4Q9UGJ1 667 aa13.7□□□□□ -0.22
VPS13D-205ENST00000473099 TSC2P49815 1807 aa13.69□□□□□ -0.22
VPS13D-205ENST00000473099 LTBP2Q14767 1821 aa13.69□□□□□ -0.22
VPS13D-205ENST00000473099 CTAGE9A4FU28 777 aa13.69□□□□□ -0.22
VPS13D-205ENST00000473099 RCCD1A6NED2 376 aa13.69□□□□□ -0.22
VPS13D-205ENST00000473099 PTGESO14684 152 aa13.69□□□□□ -0.22
VPS13D-205ENST00000473099 INPPL1O15357 1258 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms