RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 DNAH12Q6ZR08 3092 aa5.23□□□□□ -1.57
VPS13A-210ENST00000471439 GVINP1Q7Z2Y8 2422 aa5.23□□□□□ -1.57
VPS13A-210ENST00000471439 SPTBN2O15020 2390 aa5.22□□□□□ -1.57
VPS13A-210ENST00000471439 CACNA1HO95180 2353 aa5.22□□□□□ -1.57
VPS13A-210ENST00000471439 CD163L1Q9NR16 1453 aa5.22□□□□□ -1.57
VPS13A-210ENST00000471439 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP5.22□□□□□ -1.57
VPS13A-210ENST00000471439 PRPF6O94906 941 aaKnown RBP5.22□□□□□ -1.57
VPS13A-210ENST00000471439 AMHP03971 560 aa5.22□□□□□ -1.57
VPS13A-210ENST00000471439 SRGNP10124 158 aa5.22□□□□□ -1.57
VPS13A-210ENST00000471439 C6P13671 934 aa5.22□□□□□ -1.57
VPS13A-210ENST00000471439 DGCR2P98153 550 aa5.22□□□□□ -1.57
VPS13A-210ENST00000471439 ADCY2Q08462 1091 aa5.22□□□□□ -1.57
VPS13A-210ENST00000471439 DGKDQ16760 1214 aa5.22□□□□□ -1.57
VPS13A-210ENST00000471439 IGFL4Q6B9Z1 124 aa5.22□□□□□ -1.57
VPS13A-210ENST00000471439 KLHDC10Q6PID8 442 aa5.22□□□□□ -1.57
VPS13A-210ENST00000471439 ZNF610Q8N9Z0 462 aa5.22□□□□□ -1.57
VPS13A-210ENST00000471439 U2AF1L4Q8WU68 220 aaKnown RBP5.22□□□□□ -1.57
VPS13A-210ENST00000471439 ANKS1AQ92625 1134 aa5.22□□□□□ -1.57
VPS13A-210ENST00000471439 EXTL1Q92935 676 aa5.22□□□□□ -1.57
VPS13A-210ENST00000471439 E2F7Q96AV8 911 aa5.22□□□□□ -1.57
VPS13A-210ENST00000471439 ZNF496Q96IT1 587 aaPredicted RBP5.22□□□□□ -1.57
VPS13A-210ENST00000471439 RPL10LQ96L21 214 aaKnown RBP5.22□□□□□ -1.57
VPS13A-210ENST00000471439 CDK5RAP1Q96SZ6 601 aaKnown RBP5.22□□□□□ -1.57
VPS13A-210ENST00000471439 GPHA2Q96T91 129 aa5.22□□□□□ -1.57
VPS13A-210ENST00000471439 ZNF747Q9BV97 191 aa5.22□□□□□ -1.57
VPS13A-210ENST00000471439 HAPLN2Q9GZV7 340 aa5.22□□□□□ -1.57
VPS13A-210ENST00000471439 TLR9Q9NR96 1032 aa5.22□□□□□ -1.57
VPS13A-210ENST00000471439 POLR3BQ9NW08 1133 aaPredicted RBP5.22□□□□□ -1.57
VPS13A-210ENST00000471439 C14orf119Q9NWQ9 140 aa5.22□□□□□ -1.57
VPS13A-210ENST00000471439 PLA2G3Q9NZ20 509 aa5.22□□□□□ -1.57
VPS13A-210ENST00000471439 MAP3K19Q56UN5 1328 aa5.22□□□□□ -1.57
VPS13A-210ENST00000471439 PCDH11XQ9BZA7 1347 aa5.22□□□□□ -1.57
VPS13A-210ENST00000471439 PCDH11YQ9BZA8 1340 aa5.22□□□□□ -1.57
VPS13A-210ENST00000471439 A0A0A6YYK5 440 aaPredicted RBP5.21□□□□□ -1.58
VPS13A-210ENST00000471439 UBE2Q2LH0YL09 131 aa5.21□□□□□ -1.58
VPS13A-210ENST00000471439 KDM1AO60341 852 aa5.21□□□□□ -1.58
VPS13A-210ENST00000471439 ULK1O75385 1050 aa5.21□□□□□ -1.58
VPS13A-210ENST00000471439 MT-CO1P00395 513 aa5.21□□□□□ -1.58
VPS13A-210ENST00000471439 CCL5P13501 91 aa5.21□□□□□ -1.58
VPS13A-210ENST00000471439 CRKLP46109 303 aaKnown RBP5.21□□□□□ -1.58
VPS13A-210ENST00000471439 ADCY7P51828 1080 aa5.21□□□□□ -1.58
VPS13A-210ENST00000471439 SESN3P58005 492 aa5.21□□□□□ -1.58
VPS13A-210ENST00000471439 BPIFB4P59827 614 aa5.21□□□□□ -1.58
VPS13A-210ENST00000471439 EXOSC10Q01780 885 aaKnown RBP5.21□□□□□ -1.58
VPS13A-210ENST00000471439 TCIRG1Q13488 830 aa5.21□□□□□ -1.58
VPS13A-210ENST00000471439 GRM7Q14831 915 aa5.21□□□□□ -1.58
VPS13A-210ENST00000471439 PRKD1Q15139 912 aaPredicted RBP5.21□□□□□ -1.58
VPS13A-210ENST00000471439 USP39Q53GS9 565 aaKnown RBP5.21□□□□□ -1.58
VPS13A-210ENST00000471439 ODR4Q5SWX8 454 aa5.21□□□□□ -1.58
VPS13A-210ENST00000471439 KANSL1Q7Z3B3 1105 aa5.21□□□□□ -1.58
VPS13A-210ENST00000471439 POLNQ7Z5Q5 900 aa5.21□□□□□ -1.58
VPS13A-210ENST00000471439 PHYKPLQ8IUZ5 450 aa5.21□□□□□ -1.58
VPS13A-210ENST00000471439 PASD1Q8IV76 773 aa5.21□□□□□ -1.58
VPS13A-210ENST00000471439 ANKRD53Q8N9V6 530 aa5.21□□□□□ -1.58
VPS13A-210ENST00000471439 MASTLQ96GX5 879 aa5.21□□□□□ -1.58
VPS13A-210ENST00000471439 PAWRQ96IZ0 340 aaKnown RBP5.21□□□□□ -1.58
VPS13A-210ENST00000471439 SOX7Q9BT81 388 aa5.21□□□□□ -1.58
VPS13A-210ENST00000471439 PITHD1Q9GZP4 211 aaPredicted RBP5.21□□□□□ -1.58
VPS13A-210ENST00000471439 PUS7LQ9H0K6 701 aaKnown RBP5.21□□□□□ -1.58
VPS13A-210ENST00000471439 VPS11Q9H270 941 aa5.21□□□□□ -1.58
VPS13A-210ENST00000471439 PRDM12Q9H4Q4 367 aa5.21□□□□□ -1.58
VPS13A-210ENST00000471439 TMOD3Q9NYL9 352 aa5.21□□□□□ -1.58
VPS13A-210ENST00000471439 KCMF1Q9P0J7 381 aa5.21□□□□□ -1.58
VPS13A-210ENST00000471439 MSRAQ9UJ68 235 aa5.21□□□□□ -1.58
VPS13A-210ENST00000471439 G3BP2Q9UN86 482 aaKnown RBP5.21□□□□□ -1.58
VPS13A-210ENST00000471439 PTPN13Q12923 2485 aa5.2□□□□□ -1.58
VPS13A-210ENST00000471439 TAF1P21675 1872 aa5.2□□□□□ -1.58
VPS13A-210ENST00000471439 HELZ2Q9BYK8 2649 aaKnown RBP5.2□□□□□ -1.58
VPS13A-210ENST00000471439 RAB3GAP2Q9H2M9 1393 aa5.2□□□□□ -1.58
VPS13A-210ENST00000471439 AKAP8O43823 692 aaKnown RBP5.2□□□□□ -1.58
VPS13A-210ENST00000471439 OPHN1O60890 802 aa5.2□□□□□ -1.58
VPS13A-210ENST00000471439 H2AFYO75367 372 aaKnown RBP5.2□□□□□ -1.58
VPS13A-210ENST00000471439 PCDH8O95206 1070 aa5.2□□□□□ -1.58
VPS13A-210ENST00000471439 FSHBP01225 129 aa5.2□□□□□ -1.58
VPS13A-210ENST00000471439 CLEC2LP0C7M8 214 aa5.2□□□□□ -1.58
VPS13A-210ENST00000471439 TACR2P21452 398 aa5.2□□□□□ -1.58
VPS13A-210ENST00000471439 CD40P25942 277 aa5.2□□□□□ -1.58
VPS13A-210ENST00000471439 LSP1P33241 339 aa5.2□□□□□ -1.58
VPS13A-210ENST00000471439 SCAND1P57086 179 aa5.2□□□□□ -1.58
VPS13A-210ENST00000471439 TFF2Q03403 129 aa5.2□□□□□ -1.58
VPS13A-210ENST00000471439 CRHR2Q13324 411 aa5.2□□□□□ -1.58
VPS13A-210ENST00000471439 LRRC32Q14392 662 aa5.2□□□□□ -1.58
VPS13A-210ENST00000471439 HS1BP3Q53T59 392 aa5.2□□□□□ -1.58
VPS13A-210ENST00000471439 GPR158Q5T848 1215 aa5.2□□□□□ -1.58
VPS13A-210ENST00000471439 SYDE2Q5VT97 1194 aa5.2□□□□□ -1.58
VPS13A-210ENST00000471439 SPTY2D1Q68D10 685 aaPredicted RBP5.2□□□□□ -1.58
VPS13A-210ENST00000471439 PRR5LQ6MZQ0 368 aa5.2□□□□□ -1.58
VPS13A-210ENST00000471439 CRIP3Q6Q6R5 217 aa5.2□□□□□ -1.58
VPS13A-210ENST00000471439 MAMDC4Q6UXC1 1216 aa5.2□□□□□ -1.58
VPS13A-210ENST00000471439 RNF207Q6ZRF8 634 aa5.2□□□□□ -1.58
VPS13A-210ENST00000471439 ADGRE4PQ86SQ3 457 aa5.2□□□□□ -1.58
VPS13A-210ENST00000471439 CLEC14AQ86T13 490 aa5.2□□□□□ -1.58
VPS13A-210ENST00000471439 RASSF3Q86WH2 238 aa5.2□□□□□ -1.58
VPS13A-210ENST00000471439 TGFBRAP1Q8WUH2 860 aa5.2□□□□□ -1.58
VPS13A-210ENST00000471439 EDAQ92838 391 aa5.2□□□□□ -1.58
VPS13A-210ENST00000471439 SLC7A6OSQ96CW6 309 aaPredicted RBP5.2□□□□□ -1.58
VPS13A-210ENST00000471439 CDCA5Q96FF9 252 aa5.2□□□□□ -1.58
VPS13A-210ENST00000471439 AHCYL2Q96HN2 611 aaKnown RBP5.2□□□□□ -1.58
VPS13A-210ENST00000471439 VWA7Q9Y334 891 aa5.2□□□□□ -1.58
VPS13A-210ENST00000471439 SH3BP1Q9Y3L3 701 aa5.2□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms