RNA–Protein interactions for RNA: ENST00000471246.1

UBXN4-207, Transcript of UBX domain protein 4, humanhuman

TSL 3

Gene UBXN4, Length 395 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBXN4-207ENST00000471246 PRPF38AQ8NAV1 312 aaKnown RBP1.94□□□□□ -2.1
UBXN4-207ENST00000471246 NLGN4YQ8NFZ3 816 aaPredicted RBP1.94□□□□□ -2.1
UBXN4-207ENST00000471246 ACTRT2Q8TDY3 377 aa1.94□□□□□ -2.1
UBXN4-207ENST00000471246 TMEM125Q96AQ2 219 aa1.94□□□□□ -2.1
UBXN4-207ENST00000471246 BOD1Q96IK1 185 aa1.94□□□□□ -2.1
UBXN4-207ENST00000471246 FAXDC2Q96IV6 333 aa1.94□□□□□ -2.1
UBXN4-207ENST00000471246 MED15Q96RN5 788 aa1.94□□□□□ -2.1
UBXN4-207ENST00000471246 PNKPQ96T60 521 aa1.94□□□□□ -2.1
UBXN4-207ENST00000471246 SMAD5Q99717 465 aaKnown RBP1.94□□□□□ -2.1
UBXN4-207ENST00000471246 PACSIN1Q9BY11 444 aa1.94□□□□□ -2.1
UBXN4-207ENST00000471246 CASS4Q9NQ75 786 aa1.94□□□□□ -2.1
UBXN4-207ENST00000471246 KCTD5Q9NXV2 234 aa1.94□□□□□ -2.1
UBXN4-207ENST00000471246 NIPSNAP3AQ9UFN0 247 aaPredicted RBP1.94□□□□□ -2.1
UBXN4-207ENST00000471246 SERPINB13Q9UIV8 391 aa1.94□□□□□ -2.1
UBXN4-207ENST00000471246 LIMCH1Q9UPQ0 1083 aa1.94□□□□□ -2.1
UBXN4-207ENST00000471246 IPPQ9Y573 584 aa1.94□□□□□ -2.1
UBXN4-207ENST00000471246 MRFAP1Q9Y605 127 aa1.94□□□□□ -2.1
UBXN4-207ENST00000471246 SBNO2Q9Y2G9 1366 aa1.94□□□□□ -2.1
UBXN4-207ENST00000471246 SPATA31A6Q5VVP1 1343 aa1.93□□□□□ -2.1
UBXN4-207ENST00000471246 TRGV11A0A075B6L2 103 aa1.93□□□□□ -2.1
UBXN4-207ENST00000471246 A0A1W2PS29 197 aa1.93□□□□□ -2.1
UBXN4-207ENST00000471246 ALG1L2C9J202 215 aa1.93□□□□□ -2.1
UBXN4-207ENST00000471246 AGFG2O95081 481 aa1.93□□□□□ -2.1
UBXN4-207ENST00000471246 ZRANB2O95218 330 aaKnown RBP eCLIP1.93□□□□□ -2.1
UBXN4-207ENST00000471246 MTHFD1P11586 935 aaKnown RBP1.93□□□□□ -2.1
UBXN4-207ENST00000471246 PTH2RP49190 550 aa1.93□□□□□ -2.1
UBXN4-207ENST00000471246 EVA1CP58658 441 aa1.93□□□□□ -2.1
UBXN4-207ENST00000471246 ZNF280AP59817 542 aaPredicted RBP1.93□□□□□ -2.1
UBXN4-207ENST00000471246 SIM1P81133 766 aaPredicted RBP1.93□□□□□ -2.1
UBXN4-207ENST00000471246 MRPS35P82673 323 aaKnown RBP1.93□□□□□ -2.1
UBXN4-207ENST00000471246 PTPN21Q16825 1174 aa1.93□□□□□ -2.1
UBXN4-207ENST00000471246 PPP4R3AQ6IN85 833 aa1.93□□□□□ -2.1
UBXN4-207ENST00000471246 GADL1Q6ZQY3 521 aa1.93□□□□□ -2.1
UBXN4-207ENST00000471246 RD3Q7Z3Z2 195 aa1.93□□□□□ -2.1
UBXN4-207ENST00000471246 PNMA8AQ86V59 439 aaPredicted RBP1.93□□□□□ -2.1
UBXN4-207ENST00000471246 COLGALT2Q8IYK4 626 aa1.93□□□□□ -2.1
UBXN4-207ENST00000471246 ZNF366Q8N895 744 aa1.93□□□□□ -2.1
UBXN4-207ENST00000471246 Q8NA96 180 aa1.93□□□□□ -2.1
UBXN4-207ENST00000471246 SIMC1Q8NDZ2 872 aa1.93□□□□□ -2.1
UBXN4-207ENST00000471246 TMIEQ8NEW7 156 aa1.93□□□□□ -2.1
UBXN4-207ENST00000471246 NSUN6Q8TEA1 469 aaKnown RBP1.93□□□□□ -2.1
UBXN4-207ENST00000471246 SLC9A6Q92581 669 aa1.93□□□□□ -2.1
UBXN4-207ENST00000471246 COA7Q96BR5 231 aa1.93□□□□□ -2.1
UBXN4-207ENST00000471246 PTCD3Q96EY7 689 aaKnown RBP1.93□□□□□ -2.1
UBXN4-207ENST00000471246 MRGPRX4Q96LA9 322 aa1.93□□□□□ -2.1
UBXN4-207ENST00000471246 KLHL32Q96NJ5 620 aa1.93□□□□□ -2.1
UBXN4-207ENST00000471246 AIFM2Q9BRQ8 373 aa1.93□□□□□ -2.1
UBXN4-207ENST00000471246 ALG13Q9NP73 1137 aaKnown RBP1.93□□□□□ -2.1
UBXN4-207ENST00000471246 JKAMPQ9P055 326 aa1.93□□□□□ -2.1
UBXN4-207ENST00000471246 CTTNBP2NLQ9P2B4 639 aa1.93□□□□□ -2.1
UBXN4-207ENST00000471246 LRIT1Q9P2V4 623 aa1.93□□□□□ -2.1
UBXN4-207ENST00000471246 TLK1Q9UKI8 766 aa1.93□□□□□ -2.1
UBXN4-207ENST00000471246 INSL6Q9Y581 213 aa1.93□□□□□ -2.1
UBXN4-207ENST00000471246 CFAP20Q9Y6A4 193 aaKnown RBP1.93□□□□□ -2.1
UBXN4-207ENST00000471246 TNKSO95271 1327 aa1.92□□□□□ -2.1
UBXN4-207ENST00000471246 COL11A2P13942 1736 aaPredicted RBP1.92□□□□□ -2.1
UBXN4-207ENST00000471246 PRAMEF33A0A0G2JMD5 474 aa1.92□□□□□ -2.1
UBXN4-207ENST00000471246 MYADML2A6NDP7 307 aa1.92□□□□□ -2.1
UBXN4-207ENST00000471246 TOR1BO14657 336 aa1.92□□□□□ -2.1
UBXN4-207ENST00000471246 PRAMEF10O60809 474 aa1.92□□□□□ -2.1
UBXN4-207ENST00000471246 SLC43A1O75387 559 aa1.92□□□□□ -2.1
UBXN4-207ENST00000471246 KCNA2P16389 499 aa1.92□□□□□ -2.1
UBXN4-207ENST00000471246 ADKP55263 362 aaKnown RBP1.92□□□□□ -2.1
UBXN4-207ENST00000471246 MC2RQ01718 297 aa1.92□□□□□ -2.1
UBXN4-207ENST00000471246 ZNF844Q08AG5 666 aa1.92□□□□□ -2.1
UBXN4-207ENST00000471246 ZNF169Q14929 603 aaPredicted RBP1.92□□□□□ -2.1
UBXN4-207ENST00000471246 ODF1Q14990 250 aa1.92□□□□□ -2.1
UBXN4-207ENST00000471246 SF3B3Q15393 1217 aaKnown RBP1.92□□□□□ -2.1
UBXN4-207ENST00000471246 PREPLQ4J6C6 727 aaPredicted RBP1.92□□□□□ -2.1
UBXN4-207ENST00000471246 UTP14CQ5TAP6 766 aaKnown RBP1.92□□□□□ -2.1
UBXN4-207ENST00000471246 EFCAB2Q5VUJ9 269 aa1.92□□□□□ -2.1
UBXN4-207ENST00000471246 ATG9BQ674R7 924 aa1.92□□□□□ -2.1
UBXN4-207ENST00000471246 TAPT1Q6NXT6 567 aa1.92□□□□□ -2.1
UBXN4-207ENST00000471246 FBXO42Q6P3S6 717 aa1.92□□□□□ -2.1
UBXN4-207ENST00000471246 SLC4A10Q6U841 1118 aa1.92□□□□□ -2.1
UBXN4-207ENST00000471246 CLNKQ7Z7G1 428 aa1.92□□□□□ -2.1
UBXN4-207ENST00000471246 ADGRG5Q8IZF4 528 aa1.92□□□□□ -2.1
UBXN4-207ENST00000471246 LNX2Q8N448 690 aa1.92□□□□□ -2.1
UBXN4-207ENST00000471246 Q8N9P0 234 aaPredicted RBP1.92□□□□□ -2.1
UBXN4-207ENST00000471246 BOLLQ8N9W6 283 aaKnown RBP1.92□□□□□ -2.1
UBXN4-207ENST00000471246 PDPRQ8NCN5 879 aa1.92□□□□□ -2.1
UBXN4-207ENST00000471246 CAGE1Q8TC20 777 aa1.92□□□□□ -2.1
UBXN4-207ENST00000471246 CLPTM1LQ96KA5 538 aa1.92□□□□□ -2.1
UBXN4-207ENST00000471246 DMRTA2Q96SC8 542 aa1.92□□□□□ -2.1
UBXN4-207ENST00000471246 DUSP26Q9BV47 211 aa1.92□□□□□ -2.1
UBXN4-207ENST00000471246 ASPSCR1Q9BZE9 553 aa1.92□□□□□ -2.1
UBXN4-207ENST00000471246 IMPG2Q9BZV3 1241 aa1.92□□□□□ -2.1
UBXN4-207ENST00000471246 SLC13A1Q9BZW2 595 aa1.92□□□□□ -2.1
UBXN4-207ENST00000471246 RSAD1Q9HA92 442 aa1.92□□□□□ -2.1
UBXN4-207ENST00000471246 KIAA1586Q9HCI6 787 aa1.92□□□□□ -2.1
UBXN4-207ENST00000471246 INTS13Q9NVM9 706 aa1.92□□□□□ -2.1
UBXN4-207ENST00000471246 VSX1Q9NZR4 365 aaPredicted RBP1.92□□□□□ -2.1
UBXN4-207ENST00000471246 FOXJ2Q9P0K8 574 aa1.92□□□□□ -2.1
UBXN4-207ENST00000471246 CALCOCO1Q9P1Z2 691 aa1.92□□□□□ -2.1
UBXN4-207ENST00000471246 RNF7Q9UBF6 113 aa1.92□□□□□ -2.1
UBXN4-207ENST00000471246 SLC45A2Q9UMX9 530 aa1.92□□□□□ -2.1
UBXN4-207ENST00000471246 DMTF1Q9Y222 760 aa1.92□□□□□ -2.1
UBXN4-207ENST00000471246 PCDHB1Q9Y5F3 818 aa1.92□□□□□ -2.1
UBXN4-207ENST00000471246 COL4A3BPQ9Y5P4 624 aa1.92□□□□□ -2.1
UBXN4-207ENST00000471246 CADPSQ9ULU8 1353 aa1.92□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms