RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 DSTYKQ6XUX3 929 aa12.88□□□□□ -0.35
VPS13D-204ENST00000469054 SV2AQ7L0J3 742 aa12.88□□□□□ -0.35
VPS13D-204ENST00000469054 FRMD5Q7Z6J6 570 aa12.88□□□□□ -0.35
VPS13D-204ENST00000469054 APPL2Q8NEU8 664 aa12.88□□□□□ -0.35
VPS13D-204ENST00000469054 LNX1Q8TBB1 728 aaPredicted RBP12.88□□□□□ -0.35
VPS13D-204ENST00000469054 PIK3R5Q8WYR1 880 aa12.88□□□□□ -0.35
VPS13D-204ENST00000469054 SENP8Q96LD8 212 aa12.88□□□□□ -0.35
VPS13D-204ENST00000469054 KLHL5Q96PQ7 755 aa12.88□□□□□ -0.35
VPS13D-204ENST00000469054 CDCA3Q99618 268 aaPredicted RBP12.88□□□□□ -0.35
VPS13D-204ENST00000469054 SRRTQ9BXP5 876 aaKnown RBP12.88□□□□□ -0.35
VPS13D-204ENST00000469054 EMILIN2Q9BXX0 1053 aa12.88□□□□□ -0.35
VPS13D-204ENST00000469054 METTL14Q9HCE5 456 aaKnown RBP12.88□□□□□ -0.35
VPS13D-204ENST00000469054 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.88□□□□□ -0.35
VPS13D-204ENST00000469054 ANO10Q9NW15 660 aa12.88□□□□□ -0.35
VPS13D-204ENST00000469054 ARMCX3Q9UH62 379 aaPredicted RBP12.88□□□□□ -0.35
VPS13D-204ENST00000469054 PCDHB8Q9UN66 801 aa12.88□□□□□ -0.35
VPS13D-204ENST00000469054 NLRC5Q86WI3 1866 aa12.88□□□□□ -0.35
VPS13D-204ENST00000469054 CITO14578 2027 aa12.88□□□□□ -0.35
VPS13D-204ENST00000469054 KIAA1671Q9BY89 1806 aa12.88□□□□□ -0.35
VPS13D-204ENST00000469054 ARHGEF37A1IGU5 675 aa12.87□□□□□ -0.35
VPS13D-204ENST00000469054 KPNA7A9QM74 516 aa12.87□□□□□ -0.35
VPS13D-204ENST00000469054 NCK2O43639 380 aa12.87□□□□□ -0.35
VPS13D-204ENST00000469054 PHACTR2O75167 634 aa12.87□□□□□ -0.35
VPS13D-204ENST00000469054 LETM1O95202 739 aaPredicted RBP12.87□□□□□ -0.35
VPS13D-204ENST00000469054 GNA14O95837 355 aa12.87□□□□□ -0.35
VPS13D-204ENST00000469054 CNPP09543 421 aaKnown RBP12.87□□□□□ -0.35
VPS13D-204ENST00000469054 TRIM49P0CI25 452 aa12.87□□□□□ -0.35
VPS13D-204ENST00000469054 TRIM49CP0CI26 452 aa12.87□□□□□ -0.35
VPS13D-204ENST00000469054 TYMPP19971 482 aa12.87□□□□□ -0.35
VPS13D-204ENST00000469054 GTF2F1P35269 517 aaKnown RBP eCLIP12.87□□□□□ -0.35
VPS13D-204ENST00000469054 NRIP1P48552 1158 aa12.87□□□□□ -0.35
VPS13D-204ENST00000469054 PPP3CAQ08209 521 aa12.87□□□□□ -0.35
VPS13D-204ENST00000469054 MYO1EQ12965 1108 aa12.87□□□□□ -0.35
VPS13D-204ENST00000469054 BIRC3Q13489 604 aa12.87□□□□□ -0.35
VPS13D-204ENST00000469054 TRPC3Q13507 836 aa12.87□□□□□ -0.35
VPS13D-204ENST00000469054 NFKBIBQ15653 356 aa12.87□□□□□ -0.35
VPS13D-204ENST00000469054 PSMD5Q16401 504 aa12.87□□□□□ -0.35
VPS13D-204ENST00000469054 ZACNQ401N2 412 aa12.87□□□□□ -0.35
VPS13D-204ENST00000469054 SV2CQ496J9 727 aa12.87□□□□□ -0.35
VPS13D-204ENST00000469054 CCDC40Q4G0X9 1142 aa12.87□□□□□ -0.35
VPS13D-204ENST00000469054 VARS2Q5ST30 1063 aaKnown RBP12.87□□□□□ -0.35
VPS13D-204ENST00000469054 TDRD10Q5VZ19 366 aaKnown RBP12.87□□□□□ -0.35
VPS13D-204ENST00000469054 POTEHQ6S545 545 aa12.87□□□□□ -0.35
VPS13D-204ENST00000469054 PRSS55Q6UWB4 352 aaPredicted RBP12.87□□□□□ -0.35
VPS13D-204ENST00000469054 ANKS3Q6ZW76 656 aa12.87□□□□□ -0.35
VPS13D-204ENST00000469054 IGFLR1Q9H665 355 aa12.87□□□□□ -0.35
VPS13D-204ENST00000469054 FNIP2Q9P278 1114 aa12.87□□□□□ -0.35
VPS13D-204ENST00000469054 TDRD15B5MCY1 1934 aaKnown RBP12.87□□□□□ -0.35
VPS13D-204ENST00000469054 FSD2A1L4K1 749 aa12.86□□□□□ -0.35
VPS13D-204ENST00000469054 CYB561D2O14569 222 aa12.86□□□□□ -0.35
VPS13D-204ENST00000469054 TEX28O15482 410 aa12.86□□□□□ -0.35
VPS13D-204ENST00000469054 CLASP2O75122 1294 aaKnown RBP12.86□□□□□ -0.35
VPS13D-204ENST00000469054 ODC1P11926 461 aa12.86□□□□□ -0.35
VPS13D-204ENST00000469054 GTF2H1P32780 548 aa12.86□□□□□ -0.35
VPS13D-204ENST00000469054 GCLMP48507 274 aa12.86□□□□□ -0.35
VPS13D-204ENST00000469054 CREMQ03060 361 aa12.86□□□□□ -0.35
VPS13D-204ENST00000469054 MRPL58Q14197 206 aaKnown RBP12.86□□□□□ -0.35
VPS13D-204ENST00000469054 SKIV2LQ15477 1246 aaKnown RBP12.86□□□□□ -0.35
VPS13D-204ENST00000469054 STX1AQ16623 288 aa12.86□□□□□ -0.35
VPS13D-204ENST00000469054 TPD52L1Q16890 204 aaPredicted RBP12.86□□□□□ -0.35
VPS13D-204ENST00000469054 TCERG1LQ5VWI1 586 aa12.86□□□□□ -0.35
VPS13D-204ENST00000469054 C15orf39Q6ZRI6 1047 aa12.86□□□□□ -0.35
VPS13D-204ENST00000469054 HPDLQ96IR7 371 aa12.86□□□□□ -0.35
VPS13D-204ENST00000469054 GDAP2Q9NXN4 497 aa12.86□□□□□ -0.35
VPS13D-204ENST00000469054 MTRRQ9UBK8 725 aa12.86□□□□□ -0.35
VPS13D-204ENST00000469054 TIMM13Q9Y5L4 95 aaPredicted RBP12.86□□□□□ -0.35
VPS13D-204ENST00000469054 BACE2Q9Y5Z0 518 aa12.86□□□□□ -0.35
VPS13D-204ENST00000469054 PRRC2BQ5JSZ5 2229 aaKnown RBP12.86□□□□□ -0.35
VPS13D-204ENST00000469054 COL4A4P53420 1690 aaPredicted RBP12.86□□□□□ -0.35
VPS13D-204ENST00000469054 H7C4K7 107 aa12.85□□□□□ -0.35
VPS13D-204ENST00000469054 STX10O60499 249 aa12.85□□□□□ -0.35
VPS13D-204ENST00000469054 OAZ2O95190 189 aa12.85□□□□□ -0.35
VPS13D-204ENST00000469054 VNN1O95497 513 aa12.85□□□□□ -0.35
VPS13D-204ENST00000469054 STAU1O95793 577 aaKnown RBP12.85□□□□□ -0.35
VPS13D-204ENST00000469054 CYP11A1P05108 521 aa12.85□□□□□ -0.35
VPS13D-204ENST00000469054 ADH1AP07327 375 aa12.85□□□□□ -0.35
VPS13D-204ENST00000469054 CCDC192P0DO97 292 aa12.85□□□□□ -0.35
VPS13D-204ENST00000469054 RPL17P18621 184 aaKnown RBP12.85□□□□□ -0.35
VPS13D-204ENST00000469054 KLRC2P26717 231 aa12.85□□□□□ -0.35
VPS13D-204ENST00000469054 ATICP31939 592 aa12.85□□□□□ -0.35
VPS13D-204ENST00000469054 NDUFV1P49821 464 aa12.85□□□□□ -0.35
VPS13D-204ENST00000469054 MARSP56192 900 aaKnown RBP12.85□□□□□ -0.35
VPS13D-204ENST00000469054 MYL6P60660 151 aa12.85□□□□□ -0.35
VPS13D-204ENST00000469054 YWHAHQ04917 246 aaPredicted RBP12.85□□□□□ -0.35
VPS13D-204ENST00000469054 TYRO3Q06418 890 aa12.85□□□□□ -0.35
VPS13D-204ENST00000469054 ADAM15Q13444 863 aa12.85□□□□□ -0.35
VPS13D-204ENST00000469054 NCOA4Q13772 614 aa12.85□□□□□ -0.35
VPS13D-204ENST00000469054 COL19A1Q14993 1142 aa12.85□□□□□ -0.35
VPS13D-204ENST00000469054 CTC1Q2NKJ3 1217 aa12.85□□□□□ -0.35
VPS13D-204ENST00000469054 DCAF17Q5H9S7 520 aaPredicted RBP12.85□□□□□ -0.35
VPS13D-204ENST00000469054 WSCD1Q658N2 575 aa12.85□□□□□ -0.35
VPS13D-204ENST00000469054 KRT39Q6A163 491 aa12.85□□□□□ -0.35
VPS13D-204ENST00000469054 ZNF280DQ6N043 979 aa12.85□□□□□ -0.35
VPS13D-204ENST00000469054 PPFIBP1Q86W92 1011 aa12.85□□□□□ -0.35
VPS13D-204ENST00000469054 EFHBQ8N7U6 833 aa12.85□□□□□ -0.35
VPS13D-204ENST00000469054 ENOX1Q8TC92 643 aaKnown RBP12.85□□□□□ -0.35
VPS13D-204ENST00000469054 SLC35C1Q96A29 364 aa12.85□□□□□ -0.35
VPS13D-204ENST00000469054 PABPC5Q96DU9 382 aaKnown RBP12.85□□□□□ -0.35
VPS13D-204ENST00000469054 CLSTN3Q9BQT9 956 aa12.85□□□□□ -0.35
VPS13D-204ENST00000469054 XYLT2Q9H1B5 865 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms