RNA–Protein interactions for RNA: ENST00000468300.5

BRCA1-208, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best) BASIC

Gene BRCA1, Length 3,273 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-208ENST00000468300 SOX4Q06945 474 aaPredicted RBP8.85□□□□□ -0.99
BRCA1-208ENST00000468300 SGSM1Q2NKQ1 1148 aa8.85□□□□□ -0.99
BRCA1-208ENST00000468300 CCDC122Q5T0U0 273 aa8.85□□□□□ -0.99
BRCA1-208ENST00000468300 ADPGKQ9BRR6 497 aa8.85□□□□□ -0.99
BRCA1-208ENST00000468300 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP8.85□□□□□ -0.99
BRCA1-208ENST00000468300 DEF6Q9H4E7 631 aa8.85□□□□□ -0.99
BRCA1-208ENST00000468300 L2HGDHQ9H9P8 463 aa8.85□□□□□ -0.99
BRCA1-208ENST00000468300 GUCA1BQ9UMX6 200 aa8.85□□□□□ -0.99
BRCA1-208ENST00000468300 DERAQ9Y315 318 aa8.85□□□□□ -0.99
BRCA1-208ENST00000468300 MYH10P35580 1976 aa8.85□□□□□ -0.99
BRCA1-208ENST00000468300 DNM1LO00429 736 aa8.85□□□□□ -0.99
BRCA1-208ENST00000468300 KCNE1P15382 129 aa8.85□□□□□ -0.99
BRCA1-208ENST00000468300 GNG11P61952 73 aa8.85□□□□□ -0.99
BRCA1-208ENST00000468300 SLC20A2Q08357 652 aa8.85□□□□□ -0.99
BRCA1-208ENST00000468300 TMEM132DQ14C87 1099 aa8.85□□□□□ -0.99
BRCA1-208ENST00000468300 ALKBH5Q6P6C2 394 aaKnown RBP8.85□□□□□ -0.99
BRCA1-208ENST00000468300 MAMSTRQ6ZN01 415 aa8.85□□□□□ -0.99
BRCA1-208ENST00000468300 RPUSD2Q8IZ73 545 aaKnown RBP8.85□□□□□ -0.99
BRCA1-208ENST00000468300 LRRN4CLQ8ND94 238 aa8.85□□□□□ -0.99
BRCA1-208ENST00000468300 ANKRD36BP1Q96IX9 119 aa8.85□□□□□ -0.99
BRCA1-208ENST00000468300 ISCUQ9H1K1 167 aa8.85□□□□□ -0.99
BRCA1-208ENST00000468300 SMIM28A0A1B0GU29 152 aa8.85□□□□□ -0.99
BRCA1-208ENST00000468300 ANO9A1A5B4 782 aa8.85□□□□□ -0.99
BRCA1-208ENST00000468300 CARNS1A5YM72 827 aa8.85□□□□□ -0.99
BRCA1-208ENST00000468300 ARVCFO00192 962 aa8.85□□□□□ -0.99
BRCA1-208ENST00000468300 STAU1O95793 577 aaKnown RBP8.85□□□□□ -0.99
BRCA1-208ENST00000468300 TMEM191BP0C7N4 346 aa8.85□□□□□ -0.99
BRCA1-208ENST00000468300 CCL5P13501 91 aa8.85□□□□□ -0.99
BRCA1-208ENST00000468300 CD52P31358 61 aa8.85□□□□□ -0.99
BRCA1-208ENST00000468300 C1QTNF8P60827 252 aa8.85□□□□□ -0.99
BRCA1-208ENST00000468300 AMPD2Q01433 879 aa8.85□□□□□ -0.99
BRCA1-208ENST00000468300 ARHGEF6Q15052 776 aa8.85□□□□□ -0.99
BRCA1-208ENST00000468300 SPA17Q15506 151 aa8.85□□□□□ -0.99
BRCA1-208ENST00000468300 WDR44Q5JSH3 913 aa8.85□□□□□ -0.99
BRCA1-208ENST00000468300 ZNF569Q5MCW4 686 aa8.85□□□□□ -0.99
BRCA1-208ENST00000468300 RTN4RL1Q86UN2 441 aaPredicted RBP8.85□□□□□ -0.99
BRCA1-208ENST00000468300 CD302Q8IX05 232 aa8.85□□□□□ -0.99
BRCA1-208ENST00000468300 FAM126BQ8IXS8 530 aa8.85□□□□□ -0.99
BRCA1-208ENST00000468300 GLT1D1Q96MS3 346 aa8.85□□□□□ -0.99
BRCA1-208ENST00000468300 CRISPLD2Q9H0B8 497 aa8.85□□□□□ -0.99
BRCA1-208ENST00000468300 DPP3Q9NY33 737 aa8.85□□□□□ -0.99
BRCA1-208ENST00000468300 KLK14Q9P0G3 267 aa8.85□□□□□ -0.99
BRCA1-208ENST00000468300 TPX2Q9ULW0 747 aaKnown RBP8.85□□□□□ -0.99
BRCA1-208ENST00000468300 PADI3Q9ULW8 664 aa8.85□□□□□ -0.99
BRCA1-208ENST00000468300 SCN5AQ14524 2016 aa8.84□□□□□ -0.99
BRCA1-208ENST00000468300 TSC2P49815 1807 aa8.84□□□□□ -0.99
BRCA1-208ENST00000468300 FAM170AA1A519 330 aa8.84□□□□□ -0.99
BRCA1-208ENST00000468300 MOCS3O95396 460 aa8.84□□□□□ -0.99
BRCA1-208ENST00000468300 TFRCP02786 760 aaKnown RBP8.84□□□□□ -0.99
BRCA1-208ENST00000468300 TUBB4AP04350 444 aa8.84□□□□□ -0.99
BRCA1-208ENST00000468300 UNGP13051 313 aaPredicted RBP8.84□□□□□ -0.99
BRCA1-208ENST00000468300 RAP1GAPP47736 663 aa8.84□□□□□ -0.99
BRCA1-208ENST00000468300 CDR2Q01850 454 aa8.84□□□□□ -0.99
BRCA1-208ENST00000468300 TCTN1Q2MV58 587 aa8.84□□□□□ -0.99
BRCA1-208ENST00000468300 GLRA4Q5JXX5 417 aa8.84□□□□□ -0.99
BRCA1-208ENST00000468300 MRPL10Q7Z7H8 261 aaKnown RBP8.84□□□□□ -0.99
BRCA1-208ENST00000468300 NT5DC4Q86YG4 428 aa8.84□□□□□ -0.99
BRCA1-208ENST00000468300 LINC01599Q8WXQ3 324 aa8.84□□□□□ -0.99
BRCA1-208ENST00000468300 NIF3L1Q9GZT8 377 aa8.84□□□□□ -0.99
BRCA1-208ENST00000468300 MIOSQ9NXC5 875 aa8.84□□□□□ -0.99
BRCA1-208ENST00000468300 MYO1AQ9UBC5 1043 aa8.84□□□□□ -0.99
BRCA1-208ENST00000468300 HMGXB4Q9UGU5 601 aa8.84□□□□□ -0.99
BRCA1-208ENST00000468300 ITGA11Q9UKX5 1188 aa8.84□□□□□ -0.99
BRCA1-208ENST00000468300 R3HCC1Q9Y3T6 440 aaKnown RBP8.84□□□□□ -0.99
BRCA1-208ENST00000468300 PCDHB2Q9Y5E7 798 aa8.84□□□□□ -0.99
BRCA1-208ENST00000468300 KIF2AO00139 706 aaPredicted RBP8.84□□□□□ -0.99
BRCA1-208ENST00000468300 PIRO00625 290 aa8.84□□□□□ -0.99
BRCA1-208ENST00000468300 PHACTR2O75167 634 aa8.84□□□□□ -0.99
BRCA1-208ENST00000468300 RPS6KA5O75582 802 aa8.84□□□□□ -0.99
BRCA1-208ENST00000468300 PARNO95453 639 aaKnown RBP8.84□□□□□ -0.99
BRCA1-208ENST00000468300 TNNC2P02585 160 aa8.84□□□□□ -0.99
BRCA1-208ENST00000468300 WEE2P0C1S8 567 aa8.84□□□□□ -0.99
BRCA1-208ENST00000468300 POLR2BP30876 1174 aaKnown RBP8.84□□□□□ -0.99
BRCA1-208ENST00000468300 VASPP50552 380 aaPredicted RBP8.84□□□□□ -0.99
BRCA1-208ENST00000468300 GALCP54803 685 aa8.84□□□□□ -0.99
BRCA1-208ENST00000468300 ARHGAP29Q52LW3 1261 aa8.84□□□□□ -0.99
BRCA1-208ENST00000468300 AGMOQ6ZNB7 445 aa8.84□□□□□ -0.99
BRCA1-208ENST00000468300 LIMS2Q7Z4I7 341 aa8.84□□□□□ -0.99
BRCA1-208ENST00000468300 KIAA1328Q86T90 577 aa8.84□□□□□ -0.99
BRCA1-208ENST00000468300 U2AF1L4Q8WU68 220 aaKnown RBP8.84□□□□□ -0.99
BRCA1-208ENST00000468300 ARHGEF26Q96DR7 871 aa8.84□□□□□ -0.99
BRCA1-208ENST00000468300 KIF12Q96FN5 646 aa8.84□□□□□ -0.99
BRCA1-208ENST00000468300 DEFB118Q96PH6 123 aa8.84□□□□□ -0.99
BRCA1-208ENST00000468300 PPP1R10Q96QC0 940 aaKnown RBP8.84□□□□□ -0.99
BRCA1-208ENST00000468300 TWNKQ96RR1 684 aa8.84□□□□□ -0.99
BRCA1-208ENST00000468300 MYCBPQ99417 103 aaPredicted RBP8.84□□□□□ -0.99
BRCA1-208ENST00000468300 SMYD3Q9H7B4 428 aa8.84□□□□□ -0.99
BRCA1-208ENST00000468300 STARD7Q9NQZ5 370 aa8.84□□□□□ -0.99
BRCA1-208ENST00000468300 CHST12Q9NRB3 414 aa8.84□□□□□ -0.99
BRCA1-208ENST00000468300 CISHQ9NSE2 258 aa8.84□□□□□ -0.99
BRCA1-208ENST00000468300 FAM105AQ9NUU6 356 aa8.84□□□□□ -0.99
BRCA1-208ENST00000468300 COG5Q9UP83 839 aa8.84□□□□□ -0.99
BRCA1-208ENST00000468300 MACROD2A1Z1Q3 448 aa8.83□□□□□ -1
BRCA1-208ENST00000468300 CYP1A1P04798 512 aaPredicted RBP8.83□□□□□ -1
BRCA1-208ENST00000468300 GHRP10912 638 aa8.83□□□□□ -1
BRCA1-208ENST00000468300 TBXAS1P24557 533 aaPredicted RBP8.83□□□□□ -1
BRCA1-208ENST00000468300 CDH8P55286 799 aa8.83□□□□□ -1
BRCA1-208ENST00000468300 ZNF699Q32M78 642 aa8.83□□□□□ -1
BRCA1-208ENST00000468300 C10orf76Q5T2E6 689 aa8.83□□□□□ -1
BRCA1-208ENST00000468300 RSPH3Q86UC2 560 aa8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms