RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 RCOR1Q9UKL0 485 aa23■■□□□ 1.27
HMGB3-205ENST00000455596 ZFP37Q9Y6Q3 630 aaPredicted RBP23■■□□□ 1.27
HMGB3-205ENST00000455596 ARHGEF37A1IGU5 675 aa22.99■■□□□ 1.27
HMGB3-205ENST00000455596 PIRO00625 290 aa22.99■■□□□ 1.27
HMGB3-205ENST00000455596 PPEF2O14830 753 aa22.99■■□□□ 1.27
HMGB3-205ENST00000455596 OAZ2O95190 189 aa22.99■■□□□ 1.27
HMGB3-205ENST00000455596 LRG1P02750 347 aa22.99■■□□□ 1.27
HMGB3-205ENST00000455596 CPB1P15086 417 aa22.99■■□□□ 1.27
HMGB3-205ENST00000455596 PLA2G5P39877 138 aa22.99■■□□□ 1.27
HMGB3-205ENST00000455596 LILRA4P59901 499 aa22.99■■□□□ 1.27
HMGB3-205ENST00000455596 RESP18Q5W5W9 173 aa22.99■■□□□ 1.27
HMGB3-205ENST00000455596 CNNM4Q6P4Q7 775 aa22.99■■□□□ 1.27
HMGB3-205ENST00000455596 NT5DC4Q86YG4 428 aa22.99■■□□□ 1.27
HMGB3-205ENST00000455596 TCEAL8Q8IYN2 117 aa22.99■■□□□ 1.27
HMGB3-205ENST00000455596 FAM122AQ96E09 287 aa22.99■■□□□ 1.27
HMGB3-205ENST00000455596 SAAL1Q96ER3 474 aa22.99■■□□□ 1.27
HMGB3-205ENST00000455596 CYP4F11Q9HBI6 524 aa22.99■■□□□ 1.27
HMGB3-205ENST00000455596 HCFC1R1Q9NWW0 138 aa22.99■■□□□ 1.27
HMGB3-205ENST00000455596 DNMT3BQ9UBC3 853 aaKnown RBP22.99■■□□□ 1.27
HMGB3-205ENST00000455596 DUSP12Q9UNI6 340 aa22.99■■□□□ 1.27
HMGB3-205ENST00000455596 TIMM13Q9Y5L4 95 aaPredicted RBP22.99■■□□□ 1.27
HMGB3-205ENST00000455596 ANO9A1A5B4 782 aa22.98■■□□□ 1.27
HMGB3-205ENST00000455596 TYMPP19971 482 aa22.98■■□□□ 1.27
HMGB3-205ENST00000455596 ARMCX5Q6P1M9 558 aa22.98■■□□□ 1.27
HMGB3-205ENST00000455596 C7orf25Q9BPX7 421 aa22.98■■□□□ 1.27
HMGB3-205ENST00000455596 PYM1Q9BRP8 204 aaKnown RBP22.98■■□□□ 1.27
HMGB3-205ENST00000455596 DPP3Q9NY33 737 aa22.98■■□□□ 1.27
HMGB3-205ENST00000455596 AFF4Q9UHB7 1163 aaKnown RBP22.98■■□□□ 1.27
HMGB3-205ENST00000455596 CDH7Q9ULB5 785 aa22.98■■□□□ 1.27
HMGB3-205ENST00000455596 MAFFQ9ULX9 164 aa22.98■■□□□ 1.27
HMGB3-205ENST00000455596 ODC1P11926 461 aa22.97■■□□□ 1.27
HMGB3-205ENST00000455596 ADCY1Q08828 1119 aa22.97■■□□□ 1.27
HMGB3-205ENST00000455596 PABPC1LQ4VXU2 614 aaKnown RBP22.97■■□□□ 1.27
HMGB3-205ENST00000455596 BRSK2Q8IWQ3 736 aa22.97■■□□□ 1.27
HMGB3-205ENST00000455596 EFCAB13Q8IY85 973 aa22.97■■□□□ 1.27
HMGB3-205ENST00000455596 RSAD2Q8WXG1 361 aa22.97■■□□□ 1.27
HMGB3-205ENST00000455596 HPS3Q969F9 1004 aa22.97■■□□□ 1.27
HMGB3-205ENST00000455596 SENP8Q96LD8 212 aa22.97■■□□□ 1.27
HMGB3-205ENST00000455596 CBWD1Q9BRT8 395 aa22.97■■□□□ 1.27
HMGB3-205ENST00000455596 TRIOO75962 3097 aa22.96■■□□□ 1.27
HMGB3-205ENST00000455596 TULP1O00294 542 aaPredicted RBP22.96■■□□□ 1.27
HMGB3-205ENST00000455596 KIAA0391O15091 583 aaKnown RBP22.96■■□□□ 1.27
HMGB3-205ENST00000455596 EIF3DO15371 548 aaKnown RBP eCLIP22.96■■□□□ 1.27
HMGB3-205ENST00000455596 SEC24AO95486 1093 aa22.96■■□□□ 1.27
HMGB3-205ENST00000455596 PDGFBP01127 241 aaPredicted RBP22.96■■□□□ 1.27
HMGB3-205ENST00000455596 OVOS1Q6IE37 1185 aa22.96■■□□□ 1.27
HMGB3-205ENST00000455596 UNC13DQ70J99 1090 aa22.96■■□□□ 1.27
HMGB3-205ENST00000455596 SLC44A3Q8N4M1 653 aa22.96■■□□□ 1.27
HMGB3-205ENST00000455596 GLIS3Q8NEA6 775 aa22.96■■□□□ 1.27
HMGB3-205ENST00000455596 ZSWIM2Q8NEG5 633 aa22.96■■□□□ 1.27
HMGB3-205ENST00000455596 PCIF1Q9H4Z3 704 aa22.96■■□□□ 1.27
HMGB3-205ENST00000455596 RBAKQ9NYW8 714 aaPredicted RBP22.96■■□□□ 1.27
HMGB3-205ENST00000455596 KCNH3Q9ULD8 1083 aa22.96■■□□□ 1.27
HMGB3-205ENST00000455596 INSL5Q9Y5Q6 135 aa22.96■■□□□ 1.27
HMGB3-205ENST00000455596 GOLGA8IPA6NC78 632 aa22.95■■□□□ 1.26
HMGB3-205ENST00000455596 OR6C75A6NL08 312 aa22.95■■□□□ 1.26
HMGB3-205ENST00000455596 GOLGA8JA6NMD2 632 aa22.95■■□□□ 1.26
HMGB3-205ENST00000455596 ANHXE9PGG2 379 aa22.95■■□□□ 1.26
HMGB3-205ENST00000455596 SPTLC1O15269 473 aa22.95■■□□□ 1.26
HMGB3-205ENST00000455596 EXTL3O43909 919 aa22.95■■□□□ 1.26
HMGB3-205ENST00000455596 RHOP08100 348 aa22.95■■□□□ 1.26
HMGB3-205ENST00000455596 PTPN2P17706 415 aa22.95■■□□□ 1.26
HMGB3-205ENST00000455596 TAF6P49848 677 aa22.95■■□□□ 1.26
HMGB3-205ENST00000455596 KRT85P78386 507 aa22.95■■□□□ 1.26
HMGB3-205ENST00000455596 FAM26FQ5R3K3 315 aa22.95■■□□□ 1.26
HMGB3-205ENST00000455596 RNF19BQ6ZMZ0 732 aa22.95■■□□□ 1.26
HMGB3-205ENST00000455596 CEP57L1Q8IYX8 460 aa22.95■■□□□ 1.26
HMGB3-205ENST00000455596 GPD1LQ8N335 351 aa22.95■■□□□ 1.26
HMGB3-205ENST00000455596 ITFG1Q8TB96 612 aa22.95■■□□□ 1.26
HMGB3-205ENST00000455596 NOC3LQ8WTT2 800 aaKnown RBP22.95■■□□□ 1.26
HMGB3-205ENST00000455596 FGF13Q92913 245 aa22.95■■□□□ 1.26
HMGB3-205ENST00000455596 ZDHHC9Q9Y397 364 aa22.95■■□□□ 1.26
HMGB3-205ENST00000455596 NARSO43776 548 aaKnown RBP22.94■■□□□ 1.26
HMGB3-205ENST00000455596 HTR4Q13639 388 aa22.94■■□□□ 1.26
HMGB3-205ENST00000455596 ELMOD1Q8N336 334 aa22.94■■□□□ 1.26
HMGB3-205ENST00000455596 CACTINQ8WUQ7 758 aaKnown RBP22.94■■□□□ 1.26
HMGB3-205ENST00000455596 SPATA32Q96LK8 384 aa22.94■■□□□ 1.26
HMGB3-205ENST00000455596 ZNF560Q96MR9 790 aa22.94■■□□□ 1.26
HMGB3-205ENST00000455596 BLZF1Q9H2G9 400 aa22.94■■□□□ 1.26
HMGB3-205ENST00000455596 MFSD1Q9H3U5 465 aa22.94■■□□□ 1.26
HMGB3-205ENST00000455596 AVENQ9NQS1 362 aaPredicted RBP22.94■■□□□ 1.26
HMGB3-205ENST00000455596 FBXL21Q9UKT6 434 aa22.94■■□□□ 1.26
HMGB3-205ENST00000455596 DSEQ9UL01 958 aa22.94■■□□□ 1.26
HMGB3-205ENST00000455596 MRPS23Q9Y3D9 190 aaKnown RBP22.94■■□□□ 1.26
HMGB3-205ENST00000455596 NUMBLQ9Y6R0 609 aa22.94■■□□□ 1.26
HMGB3-205ENST00000455596 UBE4BO95155 1302 aa22.93■■□□□ 1.26
HMGB3-205ENST00000455596 CYP11A1P05108 521 aa22.93■■□□□ 1.26
HMGB3-205ENST00000455596 OR4Q2P0C623 313 aa22.93■■□□□ 1.26
HMGB3-205ENST00000455596 CASP1P29466 404 aa22.93■■□□□ 1.26
HMGB3-205ENST00000455596 AVPR2P30518 371 aa22.93■■□□□ 1.26
HMGB3-205ENST00000455596 AFMP43652 599 aa22.93■■□□□ 1.26
HMGB3-205ENST00000455596 VCPP55072 806 aaKnown RBP22.93■■□□□ 1.26
HMGB3-205ENST00000455596 WNT7BP56706 349 aa22.93■■□□□ 1.26
HMGB3-205ENST00000455596 TFAMQ00059 246 aaKnown RBP22.93■■□□□ 1.26
HMGB3-205ENST00000455596 MYBPC2Q14324 1141 aa22.93■■□□□ 1.26
HMGB3-205ENST00000455596 SV2CQ496J9 727 aa22.93■■□□□ 1.26
HMGB3-205ENST00000455596 EPM2AIP1Q7L775 607 aaPredicted RBP22.93■■□□□ 1.26
HMGB3-205ENST00000455596 ZNF507Q8TCN5 953 aa22.93■■□□□ 1.26
HMGB3-205ENST00000455596 LEO1Q8WVC0 666 aaPredicted RBP22.93■■□□□ 1.26
HMGB3-205ENST00000455596 PRRX2Q99811 253 aa22.93■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms