RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 BANF1O75531 89 aa12.55□□□□□ -0.4
MSH6-204ENST00000445503 WEE2P0C1S8 567 aa12.55□□□□□ -0.4
MSH6-204ENST00000445503 KRT4P19013 534 aa12.55□□□□□ -0.4
MSH6-204ENST00000445503 PSMC4P43686 418 aa12.55□□□□□ -0.4
MSH6-204ENST00000445503 CDO1Q16878 200 aa12.55□□□□□ -0.4
MSH6-204ENST00000445503 LACTB2Q53H82 288 aaPredicted RBP12.55□□□□□ -0.4
MSH6-204ENST00000445503 FAM182AQ5T1J6 154 aa12.55□□□□□ -0.4
MSH6-204ENST00000445503 SLC9A9Q8IVB4 645 aa12.55□□□□□ -0.4
MSH6-204ENST00000445503 KCTD6Q8NC69 237 aa12.55□□□□□ -0.4
MSH6-204ENST00000445503 JDP2Q8WYK2 163 aa12.55□□□□□ -0.4
MSH6-204ENST00000445503 PICK1Q9NRD5 415 aa12.55□□□□□ -0.4
MSH6-204ENST00000445503 DNPEPQ9ULA0 475 aa12.55□□□□□ -0.4
MSH6-204ENST00000445503 DCTN3O75935 186 aa12.55□□□□□ -0.4
MSH6-204ENST00000445503 PROSCO94903 275 aa12.55□□□□□ -0.4
MSH6-204ENST00000445503 CYP1A2P05177 515 aa12.55□□□□□ -0.4
MSH6-204ENST00000445503 CCND2P30279 289 aa12.55□□□□□ -0.4
MSH6-204ENST00000445503 GNPTABQ3T906 1256 aa12.55□□□□□ -0.4
MSH6-204ENST00000445503 SNRNP48Q6IEG0 339 aaKnown RBP12.55□□□□□ -0.4
MSH6-204ENST00000445503 CASC4Q6P4E1 433 aa12.55□□□□□ -0.4
MSH6-204ENST00000445503 ZC3H18Q86VM9 953 aaKnown RBP12.55□□□□□ -0.4
MSH6-204ENST00000445503 MCPH1Q8NEM0 835 aa12.55□□□□□ -0.4
MSH6-204ENST00000445503 DTX3LQ8TDB6 740 aa12.55□□□□□ -0.4
MSH6-204ENST00000445503 SYTL5Q8TDW5 730 aaPredicted RBP12.55□□□□□ -0.4
MSH6-204ENST00000445503 FAM151AQ8WW52 585 aa12.55□□□□□ -0.4
MSH6-204ENST00000445503 CKAP2Q8WWK9 683 aa12.55□□□□□ -0.4
MSH6-204ENST00000445503 ZBTB45Q96K62 511 aaPredicted RBP12.55□□□□□ -0.4
MSH6-204ENST00000445503 PARVAQ9NVD7 372 aa12.55□□□□□ -0.4
MSH6-204ENST00000445503 USH1CQ9Y6N9 552 aa12.55□□□□□ -0.4
MSH6-204ENST00000445503 CBX6O95503 412 aa12.55□□□□□ -0.4
MSH6-204ENST00000445503 KITP10721 976 aa12.55□□□□□ -0.4
MSH6-204ENST00000445503 CCND1P24385 295 aa12.55□□□□□ -0.4
MSH6-204ENST00000445503 GTF2H1P32780 548 aa12.55□□□□□ -0.4
MSH6-204ENST00000445503 TAS2R40P59535 323 aa12.55□□□□□ -0.4
MSH6-204ENST00000445503 MTMR2Q13614 643 aa12.55□□□□□ -0.4
MSH6-204ENST00000445503 HIF1AQ16665 826 aa12.55□□□□□ -0.4
MSH6-204ENST00000445503 SLC27A3Q5K4L6 730 aa12.55□□□□□ -0.4
MSH6-204ENST00000445503 SPDYCQ5MJ68 293 aa12.55□□□□□ -0.4
MSH6-204ENST00000445503 DARS2Q6PI48 645 aaKnown RBP12.55□□□□□ -0.4
MSH6-204ENST00000445503 SYDE1Q6ZW31 735 aaPredicted RBP12.55□□□□□ -0.4
MSH6-204ENST00000445503 CDR2LQ86X02 465 aaPredicted RBP12.55□□□□□ -0.4
MSH6-204ENST00000445503 PDIK1LQ8N165 341 aa12.55□□□□□ -0.4
MSH6-204ENST00000445503 PDCD7Q8N8D1 485 aaKnown RBP12.55□□□□□ -0.4
MSH6-204ENST00000445503 RMDN2Q96LZ7 410 aa12.55□□□□□ -0.4
MSH6-204ENST00000445503 LRRC19Q9H756 370 aa12.55□□□□□ -0.4
MSH6-204ENST00000445503 IP6K2Q9UHH9 426 aa12.55□□□□□ -0.4
MSH6-204ENST00000445503 NOCTQ9UK39 431 aaKnown RBP12.55□□□□□ -0.4
MSH6-204ENST00000445503 GINS2Q9Y248 185 aa12.55□□□□□ -0.4
MSH6-204ENST00000445503 CCDC88AQ3V6T2 1871 aa12.55□□□□□ -0.4
MSH6-204ENST00000445503 NR3C2P08235 984 aa12.55□□□□□ -0.4
MSH6-204ENST00000445503 MYBL1P10243 752 aa12.55□□□□□ -0.4
MSH6-204ENST00000445503 RNASELQ05823 741 aaKnown RBP12.55□□□□□ -0.4
MSH6-204ENST00000445503 MYBPC2Q14324 1141 aa12.55□□□□□ -0.4
MSH6-204ENST00000445503 MDH1BQ5I0G3 518 aa12.55□□□□□ -0.4
MSH6-204ENST00000445503 ENOSF1Q7L5Y1 443 aa12.55□□□□□ -0.4
MSH6-204ENST00000445503 MAGEB18Q96M61 343 aa12.55□□□□□ -0.4
MSH6-204ENST00000445503 FHDC1Q9C0D6 1143 aaPredicted RBP12.55□□□□□ -0.4
MSH6-204ENST00000445503 RXFP1Q9HBX9 757 aa12.55□□□□□ -0.4
MSH6-204ENST00000445503 ENO4A6NNW6 628 aa12.54□□□□□ -0.4
MSH6-204ENST00000445503 F5H423 210 aaPredicted RBP12.54□□□□□ -0.4
MSH6-204ENST00000445503 FSCN2O14926 492 aa12.54□□□□□ -0.4
MSH6-204ENST00000445503 RNF8O76064 485 aa12.54□□□□□ -0.4
MSH6-204ENST00000445503 ICAM1P05362 532 aa12.54□□□□□ -0.4
MSH6-204ENST00000445503 PECAM1P16284 738 aaPredicted RBP12.54□□□□□ -0.4
MSH6-204ENST00000445503 SFNP31947 248 aa12.54□□□□□ -0.4
MSH6-204ENST00000445503 MKRN3Q13064 507 aaKnown RBP12.54□□□□□ -0.4
MSH6-204ENST00000445503 ORC1Q13415 861 aa12.54□□□□□ -0.4
MSH6-204ENST00000445503 EMC10Q5UCC4 262 aa12.54□□□□□ -0.4
MSH6-204ENST00000445503 PRAMEF18Q5VWM3 479 aa12.54□□□□□ -0.4
MSH6-204ENST00000445503 C3orf62Q6ZUJ4 267 aa12.54□□□□□ -0.4
MSH6-204ENST00000445503 FITM2Q8N6M3 262 aa12.54□□□□□ -0.4
MSH6-204ENST00000445503 TMEM35BQ8NCS4 154 aa12.54□□□□□ -0.4
MSH6-204ENST00000445503 FEZF2Q8TBJ5 459 aa12.54□□□□□ -0.4
MSH6-204ENST00000445503 SENP7Q9BQF6 1050 aa12.54□□□□□ -0.4
MSH6-204ENST00000445503 COL20A1Q9P218 1284 aa12.54□□□□□ -0.4
MSH6-204ENST00000445503 MCM8Q9UJA3 840 aa12.54□□□□□ -0.4
MSH6-204ENST00000445503 CCDC195A0A1B0GUA6 201 aa12.54□□□□□ -0.4
MSH6-204ENST00000445503 I3L4J1 428 aa12.54□□□□□ -0.4
MSH6-204ENST00000445503 ARL4CP56559 192 aa12.54□□□□□ -0.4
MSH6-204ENST00000445503 MFSD7Q6UXD7 560 aa12.54□□□□□ -0.4
MSH6-204ENST00000445503 PIGWQ7Z7B1 504 aa12.54□□□□□ -0.4
MSH6-204ENST00000445503 CFAP61Q8NHU2 1237 aa12.54□□□□□ -0.4
MSH6-204ENST00000445503 MYLK2Q9H1R3 596 aa12.54□□□□□ -0.4
MSH6-204ENST00000445503 RPAP3Q9H6T3 665 aaPredicted RBP12.54□□□□□ -0.4
MSH6-204ENST00000445503 COL14A1Q05707 1796 aaKnown RBP12.54□□□□□ -0.4
MSH6-204ENST00000445503 INO80B-WBP1J3KQ70 363 aa12.54□□□□□ -0.4
MSH6-204ENST00000445503 GYG2O15488 501 aa12.54□□□□□ -0.4
MSH6-204ENST00000445503 MAP3K6O95382 1288 aa12.54□□□□□ -0.4
MSH6-204ENST00000445503 ESRRAP11474 423 aaPredicted RBP12.54□□□□□ -0.4
MSH6-204ENST00000445503 PRKCEQ02156 737 aa12.54□□□□□ -0.4
MSH6-204ENST00000445503 NCOA4Q13772 614 aa12.54□□□□□ -0.4
MSH6-204ENST00000445503 CAPRIN2Q6IMN6 1127 aaKnown RBP12.54□□□□□ -0.4
MSH6-204ENST00000445503 DPY19L2P1Q6NXN4 242 aa12.54□□□□□ -0.4
MSH6-204ENST00000445503 APBB1IPQ7Z5R6 666 aaPredicted RBP12.54□□□□□ -0.4
MSH6-204ENST00000445503 GRAMD1AQ96CP6 724 aa12.54□□□□□ -0.4
MSH6-204ENST00000445503 INO80BQ9C086 356 aaPredicted RBP12.54□□□□□ -0.4
MSH6-204ENST00000445503 CHMP2BQ9UQN3 213 aa12.54□□□□□ -0.4
MSH6-204ENST00000445503 C15orf41Q9Y2V0 281 aa12.54□□□□□ -0.4
MSH6-204ENST00000445503 SSTR1P30872 391 aa12.53□□□□□ -0.4
MSH6-204ENST00000445503 CAP2P40123 477 aa12.53□□□□□ -0.4
MSH6-204ENST00000445503 CPA2P48052 419 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms