RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 EIF2B5Q13144 721 aaKnown RBP2.55□□□□□ -2
CCDC88A-208ENST00000444458 TDGQ13569 410 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 MOGSQ13724 837 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 UBE3CQ15386 1083 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 NFIL3Q16649 462 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 SLC10A5Q5PT55 438 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 ZBTB41Q5SVQ8 909 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 SLC9C2Q5TAH2 1124 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 SLFN12LQ6IEE8 588 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 NFRKBQ6P4R8 1299 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 PET117Q6UWS5 81 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 THNSL1Q8IYQ7 743 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 CELF5Q8N6W0 485 aaKnown RBP2.55□□□□□ -2
CCDC88A-208ENST00000444458 OR6Y1Q8NGX8 325 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 UBASH3BQ8TF42 649 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 RSAD2Q8WXG1 361 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 TTC9Q92623 222 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 TNFRSF25Q93038 417 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 TRIM47Q96LD4 638 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 APOL6Q9BWW8 343 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 MANSC1Q9H8J5 431 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 HEYLQ9NQ87 328 aaPredicted RBP2.55□□□□□ -2
CCDC88A-208ENST00000444458 NDFIP2Q9NV92 336 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 CDY2AQ9Y6F7 541 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 A0A1W2PQJ5 194 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 PRAMEF22A3QJZ6 481 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 C22orf46C9J442 243 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 H0Y626 953 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 ARNTLO00327 626 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 GGPS1O95749 300 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 DLGAP3O95886 979 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 FUCA1P04066 466 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 MMEP08473 750 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 SRGAP2BP0DMP2 458 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 TYRP14679 529 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 VAV1P15498 845 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 ABCD3P28288 659 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 BMP8BP34820 402 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 CTSKP43235 329 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 HARS2P49590 506 aaKnown RBP2.55□□□□□ -2
CCDC88A-208ENST00000444458 SOX8P57073 446 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 UBASH3AP57075 661 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 SLC6A3Q01959 620 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 AIMP1Q12904 312 aaKnown RBP2.55□□□□□ -2
CCDC88A-208ENST00000444458 DCTN2Q13561 401 aaKnown RBP2.55□□□□□ -2
CCDC88A-208ENST00000444458 TRIM25Q14258 630 aaKnown RBP2.55□□□□□ -2
CCDC88A-208ENST00000444458 E2F5Q15329 346 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 SFRP5Q5T4F7 317 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 PRAMEF18Q5VWM3 479 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 ALKBH5Q6P6C2 394 aaKnown RBP2.55□□□□□ -2
CCDC88A-208ENST00000444458 OLFM4Q6UX06 510 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 BTNL9Q6UXG8 535 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 IKBIPQ70UQ0 350 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 MILR1Q7Z6M3 343 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 TSPYL5Q86VY4 417 aaPredicted RBP2.55□□□□□ -2
CCDC88A-208ENST00000444458 FAM129CQ86XR2 697 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 SLC44A2Q8IWA5 706 aaPredicted RBP2.55□□□□□ -2
CCDC88A-208ENST00000444458 YAF2Q8IY57 180 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 ZNF655Q8N720 491 aaPredicted RBP2.55□□□□□ -2
CCDC88A-208ENST00000444458 GLB1L3Q8NCI6 653 aaPredicted RBP2.55□□□□□ -2
CCDC88A-208ENST00000444458 TTLL11Q8NHH1 800 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 GABPB2Q8TAK5 448 aaPredicted RBP2.55□□□□□ -2
CCDC88A-208ENST00000444458 CCHCR1Q8TD31 782 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 BCL7CQ8WUZ0 217 aaPredicted RBP2.55□□□□□ -2
CCDC88A-208ENST00000444458 GAB3Q8WWW8 586 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 HSPH1Q92598 858 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 NSUN4Q96CB9 384 aaKnown RBP2.55□□□□□ -2
CCDC88A-208ENST00000444458 SIPA1Q96FS4 1042 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 TCTN2Q96GX1 697 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 HGH1Q9BTY7 390 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 YIPF2Q9BWQ6 316 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 AGXT2Q9BYV1 514 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 TRIM6Q9C030 488 aaPredicted RBP2.55□□□□□ -2
CCDC88A-208ENST00000444458 SLC35C2Q9NQQ7 365 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 RBM12Q9NTZ6 932 aaKnown RBP2.55□□□□□ -2
CCDC88A-208ENST00000444458 STK32BQ9NY57 414 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 COL20A1Q9P218 1284 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 IGSF9Q9P2J2 1179 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 ZNF112Q9UJU3 913 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 C19orf53Q9UNZ5 99 aaPredicted RBP2.55□□□□□ -2
CCDC88A-208ENST00000444458 MTO1Q9Y2Z2 717 aaKnown RBP2.55□□□□□ -2
CCDC88A-208ENST00000444458 HS3ST4Q9Y661 456 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 NUMBLQ9Y6R0 609 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 TDRD9Q8NDG6 1382 aaKnown RBP2.55□□□□□ -2
CCDC88A-208ENST00000444458 MYO1FO00160 1098 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 PES1O00541 588 aaKnown RBP2.55□□□□□ -2
CCDC88A-208ENST00000444458 VILLO15195 856 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 NRP2O60462 931 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 SGPL1O95470 568 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 EN2P19622 333 aaPredicted RBP2.55□□□□□ -2
CCDC88A-208ENST00000444458 MAPK3P27361 379 aaPredicted RBP2.55□□□□□ -2
CCDC88A-208ENST00000444458 CST5P28325 142 aaPredicted RBP2.55□□□□□ -2
CCDC88A-208ENST00000444458 CASQ1P31415 396 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 SLC12A2P55011 1212 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 SESN2P58004 480 aaPredicted RBP2.55□□□□□ -2
CCDC88A-208ENST00000444458 FOXO4P98177 505 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 DSC2Q02487 901 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 SOX4Q06945 474 aaPredicted RBP2.55□□□□□ -2
CCDC88A-208ENST00000444458 SCAPQ12770 1279 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 TARBP2Q15633 366 aaKnown RBP2.55□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms