RNA–Protein interactions for RNA: ENST00000439561.6

COPB1-202, Transcript of coatomer protein complex subunit beta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPB1, Length 3,382 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-202ENST00000439561 SPIRE1Q08AE8 756 aa9.56□□□□□ -0.88
COPB1-202ENST00000439561 EFTUD2Q15029 972 aaKnown RBP eCLIP9.56□□□□□ -0.887e-9■■■■□ 22.8
COPB1-202ENST00000439561 HIF1AQ16665 826 aa9.56□□□□□ -0.88
COPB1-202ENST00000439561 CEP55Q53EZ4 464 aa9.56□□□□□ -0.88
COPB1-202ENST00000439561 BRDTQ58F21 947 aaPredicted RBP9.56□□□□□ -0.88
COPB1-202ENST00000439561 PPP1R15BQ5SWA1 713 aa9.56□□□□□ -0.88
COPB1-202ENST00000439561 PLA2G4FQ68DD2 849 aa9.56□□□□□ -0.88
COPB1-202ENST00000439561 CDCA2Q69YH5 1023 aaPredicted RBP9.56□□□□□ -0.88
COPB1-202ENST00000439561 LRRC74BQ6ZQY2 392 aa9.56□□□□□ -0.88
COPB1-202ENST00000439561 OTOP1Q7RTM1 612 aa9.56□□□□□ -0.88
COPB1-202ENST00000439561 TRABD2AQ86V40 505 aa9.56□□□□□ -0.88
COPB1-202ENST00000439561 CCNJLQ8IV13 435 aa9.56□□□□□ -0.88
COPB1-202ENST00000439561 RFWD2Q8NHY2 731 aa9.56□□□□□ -0.88
COPB1-202ENST00000439561 TCP10LQ8TDR4 215 aa9.56□□□□□ -0.88
COPB1-202ENST00000439561 KREMEN1Q96MU8 473 aa9.56□□□□□ -0.88
COPB1-202ENST00000439561 CDCA7Q9BWT1 371 aaPredicted RBP9.56□□□□□ -0.88
COPB1-202ENST00000439561 SHCBP1LQ9BZQ2 653 aa9.56□□□□□ -0.88
COPB1-202ENST00000439561 DNPEPQ9ULA0 475 aa9.56□□□□□ -0.88
COPB1-202ENST00000439561 SLIT2O94813 1529 aa9.56□□□□□ -0.88
COPB1-202ENST00000439561 CACNA1SQ13698 1873 aa9.56□□□□□ -0.88
COPB1-202ENST00000439561 DENND3A2RUS2 1198 aa9.56□□□□□ -0.88
COPB1-202ENST00000439561 FSCN2O14926 492 aa9.56□□□□□ -0.88
COPB1-202ENST00000439561 AHCYL1O43865 530 aa9.56□□□□□ -0.88
COPB1-202ENST00000439561 EDF1O60869 148 aaKnown RBP9.56□□□□□ -0.88
COPB1-202ENST00000439561 OAS1P00973 400 aaKnown RBP9.56□□□□□ -0.88
COPB1-202ENST00000439561 SKIV2L2P42285 1042 aaKnown RBP9.56□□□□□ -0.88
COPB1-202ENST00000439561 ALDH18A1P54886 795 aaKnown RBP9.56□□□□□ -0.88
COPB1-202ENST00000439561 TFDP1Q14186 410 aa9.56□□□□□ -0.88
COPB1-202ENST00000439561 WASHC2DQ5SRD0 308 aa9.56□□□□□ -0.88
COPB1-202ENST00000439561 DPY19L2P1Q6NXN4 242 aa9.56□□□□□ -0.88
COPB1-202ENST00000439561 SYDE1Q6ZW31 735 aaPredicted RBP9.56□□□□□ -0.88
COPB1-202ENST00000439561 ASRGL1Q7L266 308 aa9.56□□□□□ -0.88
COPB1-202ENST00000439561 SMC1BQ8NDV3 1235 aa9.56□□□□□ -0.88
COPB1-202ENST00000439561 VTI1AQ96AJ9 217 aa9.56□□□□□ -0.88
COPB1-202ENST00000439561 NSL1Q96IY1 281 aa9.56□□□□□ -0.88
COPB1-202ENST00000439561 MANSC1Q9H8J5 431 aa9.56□□□□□ -0.88
COPB1-202ENST00000439561 ARL8BQ9NVJ2 186 aa9.56□□□□□ -0.88
COPB1-202ENST00000439561 LRCH1Q9Y2L9 728 aa9.56□□□□□ -0.88
COPB1-202ENST00000439561 TESPA1A2RU30 521 aaPredicted RBP9.55□□□□□ -0.88
COPB1-202ENST00000439561 SNHG28P0DPA3 235 aa9.55□□□□□ -0.88
COPB1-202ENST00000439561 GM2AP17900 193 aa9.55□□□□□ -0.88
COPB1-202ENST00000439561 YARSP54577 528 aaKnown RBP9.55□□□□□ -0.88
COPB1-202ENST00000439561 DMP1Q13316 513 aaPredicted RBP9.55□□□□□ -0.88
COPB1-202ENST00000439561 PARP6Q2NL67 630 aa9.55□□□□□ -0.88
COPB1-202ENST00000439561 SMTNL2Q2TAL5 461 aa9.55□□□□□ -0.88
COPB1-202ENST00000439561 Q4G0T1 1027 aa9.55□□□□□ -0.88
COPB1-202ENST00000439561 EGFL6Q8IUX8 553 aa9.55□□□□□ -0.88
COPB1-202ENST00000439561 ZC3H3Q8IXZ2 948 aaKnown RBP9.55□□□□□ -0.88
COPB1-202ENST00000439561 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP9.55□□□□□ -0.88
COPB1-202ENST00000439561 OGFOD1Q8N543 542 aa9.55□□□□□ -0.88
COPB1-202ENST00000439561 ASAP3Q8TDY4 903 aa9.55□□□□□ -0.88
COPB1-202ENST00000439561 INPP5DQ92835 1189 aa9.55□□□□□ -0.88
COPB1-202ENST00000439561 SEMA4DQ92854 862 aa9.55□□□□□ -0.88
COPB1-202ENST00000439561 CFAP36Q96G28 342 aa9.55□□□□□ -0.88
COPB1-202ENST00000439561 TTC25Q96NG3 672 aa9.55□□□□□ -0.88
COPB1-202ENST00000439561 WDR18Q9BV38 432 aa9.55□□□□□ -0.88
COPB1-202ENST00000439561 TMEM120AQ9BXJ8 343 aa9.55□□□□□ -0.88
COPB1-202ENST00000439561 CYP4F11Q9HBI6 524 aa9.55□□□□□ -0.88
COPB1-202ENST00000439561 KMT5AQ9NQR1 393 aa9.55□□□□□ -0.88
COPB1-202ENST00000439561 NDE1Q9NXR1 346 aa9.55□□□□□ -0.88
COPB1-202ENST00000439561 SAE1Q9UBE0 346 aaPredicted RBP9.55□□□□□ -0.88
COPB1-202ENST00000439561 VAV3Q9UKW4 847 aa9.55□□□□□ -0.88
COPB1-202ENST00000439561 CHMP2BQ9UQN3 213 aa9.55□□□□□ -0.88
COPB1-202ENST00000439561 PCDHAC2Q9Y5I4 1007 aa9.55□□□□□ -0.88
COPB1-202ENST00000439561 ZMYM2Q9UBW7 1377 aa9.55□□□□□ -0.88
COPB1-202ENST00000439561 PARP4Q9UKK3 1724 aaKnown RBP9.55□□□□□ -0.88
COPB1-202ENST00000439561 TJP3O95049 919 aa9.55□□□□□ -0.88
COPB1-202ENST00000439561 MYL2P10916 166 aa9.55□□□□□ -0.88
COPB1-202ENST00000439561 CD19P15391 556 aa9.55□□□□□ -0.88
COPB1-202ENST00000439561 BGNP21810 368 aa9.55□□□□□ -0.88
COPB1-202ENST00000439561 BRD2P25440 801 aaKnown RBP9.55□□□□□ -0.88
COPB1-202ENST00000439561 HSPA1LP34931 641 aa9.55□□□□□ -0.88
COPB1-202ENST00000439561 SOX10P56693 466 aa9.55□□□□□ -0.88
COPB1-202ENST00000439561 ROR2Q01974 943 aaKnown RBP9.55□□□□□ -0.88
COPB1-202ENST00000439561 PDK4Q16654 411 aa9.55□□□□□ -0.88
COPB1-202ENST00000439561 LARP7Q4G0J3 582 aaKnown RBP eCLIP9.55□□□□□ -0.88
COPB1-202ENST00000439561 SPOPLQ6IQ16 392 aa9.55□□□□□ -0.88
COPB1-202ENST00000439561 IZUMO2Q6UXV1 221 aa9.55□□□□□ -0.88
COPB1-202ENST00000439561 RGS9BPQ6ZS82 235 aa9.55□□□□□ -0.88
COPB1-202ENST00000439561 CLNKQ7Z7G1 428 aa9.55□□□□□ -0.88
COPB1-202ENST00000439561 HERPUD2Q9BSE4 406 aa9.55□□□□□ -0.88
COPB1-202ENST00000439561 IMPG2Q9BZV3 1241 aa9.55□□□□□ -0.88
COPB1-202ENST00000439561 MRPL47Q9HD33 250 aaKnown RBP9.55□□□□□ -0.88
COPB1-202ENST00000439561 PI4KBQ9UBF8 816 aa9.55□□□□□ -0.88
COPB1-202ENST00000439561 ANGPTL2Q9UKU9 493 aa9.55□□□□□ -0.88
COPB1-202ENST00000439561 PRR12Q9ULL5 1215 aa9.55□□□□□ -0.88
COPB1-202ENST00000439561 CCNB1P14635 433 aa9.55□□□□□ -0.88
COPB1-202ENST00000439561 CNGA1P29973 690 aa9.55□□□□□ -0.88
COPB1-202ENST00000439561 MTMR2Q13614 643 aa9.55□□□□□ -0.88
COPB1-202ENST00000439561 PPM1NQ8N819 430 aa9.55□□□□□ -0.88
COPB1-202ENST00000439561 GLIS1Q8NBF1 620 aa9.55□□□□□ -0.88
COPB1-202ENST00000439561 B4GALNT2Q8NHY0 566 aa9.55□□□□□ -0.88
COPB1-202ENST00000439561 CCDC110Q8TBZ0 833 aa9.55□□□□□ -0.88
COPB1-202ENST00000439561 NGLY1Q96IV0 654 aa9.55□□□□□ -0.88
COPB1-202ENST00000439561 HSD17B14Q9BPX1 270 aa9.55□□□□□ -0.88
COPB1-202ENST00000439561 BTBD10Q9BSF8 475 aa9.55□□□□□ -0.88
COPB1-202ENST00000439561 WASF2Q9Y6W5 498 aa9.55□□□□□ -0.88
COPB1-202ENST00000439561 ADGRA3Q8IWK6 1321 aa9.55□□□□□ -0.88
COPB1-202ENST00000439561 CYP3A7-CYP3A51PA0A087WV96 503 aa9.54□□□□□ -0.88
COPB1-202ENST00000439561 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms