RNA–Protein interactions for RNA: ENST00000439235.5

CHD3-204, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 1,263 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-204ENST00000439235 NXF1Q9UBU9 619 aaKnown RBP22.22■■□□□ 1.15
CHD3-204ENST00000439235 DDHD2O94830 711 aa22.21■■□□□ 1.15
CHD3-204ENST00000439235 YWHAEP62258 255 aaKnown RBP22.21■■□□□ 1.15
CHD3-204ENST00000439235 UPP1Q16831 310 aa22.21■■□□□ 1.15
CHD3-204ENST00000439235 TSR1Q2NL82 804 aaKnown RBP22.21■■□□□ 1.15
CHD3-204ENST00000439235 PAN2Q504Q3 1202 aaKnown RBP22.21■■□□□ 1.15
CHD3-204ENST00000439235 PDXDC1Q6P996 788 aa22.21■■□□□ 1.15
CHD3-204ENST00000439235 ZNF280BQ86YH2 543 aa22.21■■□□□ 1.15
CHD3-204ENST00000439235 COLGALT2Q8IYK4 626 aa22.21■■□□□ 1.15
CHD3-204ENST00000439235 CMTR2Q8IYT2 770 aaKnown RBP22.21■■□□□ 1.15
CHD3-204ENST00000439235 PHOSPHO2Q8TCD6 241 aa22.21■■□□□ 1.15
CHD3-204ENST00000439235 BAP1Q92560 729 aa22.21■■□□□ 1.15
CHD3-204ENST00000439235 TMEM175Q9BSA9 504 aa22.21■■□□□ 1.15
CHD3-204ENST00000439235 AJAP1Q9UKB5 411 aaPredicted RBP22.21■■□□□ 1.15
CHD3-204ENST00000439235 SLC4A7Q9Y6M7 1214 aa22.21■■□□□ 1.15
CHD3-204ENST00000439235 KPNA7A9QM74 516 aa22.2■■□□□ 1.14
CHD3-204ENST00000439235 MAGEA10P43363 369 aaPredicted RBP22.2■■□□□ 1.14
CHD3-204ENST00000439235 DRAP1Q14919 205 aaPredicted RBP22.2■■□□□ 1.14
CHD3-204ENST00000439235 ARHGAP44Q17R89 818 aa22.2■■□□□ 1.14
CHD3-204ENST00000439235 FAM117BQ6P1L5 589 aa22.2■■□□□ 1.14
CHD3-204ENST00000439235 CCDC186Q7Z3E2 898 aa22.2■■□□□ 1.14
CHD3-204ENST00000439235 ELMO3Q96BJ8 720 aa22.2■■□□□ 1.14
CHD3-204ENST00000439235 ZNF689Q96CS4 500 aaPredicted RBP22.2■■□□□ 1.14
CHD3-204ENST00000439235 YME1L1Q96TA2 773 aa22.2■■□□□ 1.14
CHD3-204ENST00000439235 FAM124BQ9H5Z6 455 aaPredicted RBP22.2■■□□□ 1.14
CHD3-204ENST00000439235 NRDE2Q9H7Z3 1164 aa22.2■■□□□ 1.14
CHD3-204ENST00000439235 CYP3A43Q9HB55 503 aa22.2■■□□□ 1.14
CHD3-204ENST00000439235 RC3H2Q9HBD1 1191 aaKnown RBP22.2■■□□□ 1.14
CHD3-204ENST00000439235 LRRC53A6NM62 1247 aa22.19■■□□□ 1.14
CHD3-204ENST00000439235 F8VZ95 297 aa22.19■■□□□ 1.14
CHD3-204ENST00000439235 TMEM189-UBE2V1I3L0A0 370 aa22.19■■□□□ 1.14
CHD3-204ENST00000439235 B3GAT3O94766 335 aa22.19■■□□□ 1.14
CHD3-204ENST00000439235 STAT1P42224 750 aa22.19■■□□□ 1.14
CHD3-204ENST00000439235 ASPAP45381 313 aa22.19■■□□□ 1.14
CHD3-204ENST00000439235 OR1G1P47890 313 aa22.19■■□□□ 1.14
CHD3-204ENST00000439235 ADKP55263 362 aaKnown RBP22.19■■□□□ 1.14
CHD3-204ENST00000439235 JAM2P57087 298 aa22.19■■□□□ 1.14
CHD3-204ENST00000439235 ARID5BQ14865 1188 aa22.19■■□□□ 1.14
CHD3-204ENST00000439235 DCLRE1AQ6PJP8 1040 aa22.19■■□□□ 1.14
CHD3-204ENST00000439235 SCARA5Q6ZMJ2 495 aa22.19■■□□□ 1.14
CHD3-204ENST00000439235 TC2NQ8N9U0 490 aa22.19■■□□□ 1.14
CHD3-204ENST00000439235 OR8K1Q8NGG5 319 aa22.19■■□□□ 1.14
CHD3-204ENST00000439235 KAT5Q92993 513 aa22.19■■□□□ 1.14
CHD3-204ENST00000439235 KREMEN1Q96MU8 473 aa22.19■■□□□ 1.14
CHD3-204ENST00000439235 BCO2Q9BYV7 579 aa22.19■■□□□ 1.14
CHD3-204ENST00000439235 ABHD10Q9NUJ1 306 aa22.19■■□□□ 1.14
CHD3-204ENST00000439235 GDAP2Q9NXN4 497 aa22.19■■□□□ 1.14
CHD3-204ENST00000439235 CXXC1Q9P0U4 656 aaPredicted RBP22.19■■□□□ 1.14
CHD3-204ENST00000439235 CACNG4Q9UBN1 327 aa22.19■■□□□ 1.14
CHD3-204ENST00000439235 POLIQ9UNA4 740 aa22.19■■□□□ 1.14
CHD3-204ENST00000439235 SNX9Q9Y5X1 595 aa22.19■■□□□ 1.14
CHD3-204ENST00000439235 TRIP11Q15643 1979 aa22.19■■□□□ 1.14
CHD3-204ENST00000439235 TDRD15B5MCY1 1934 aaKnown RBP22.18■■□□□ 1.14
CHD3-204ENST00000439235 CARNS1A5YM72 827 aa22.18■■□□□ 1.14
CHD3-204ENST00000439235 RNF225M0QZC1 329 aaPredicted RBP22.18■■□□□ 1.14
CHD3-204ENST00000439235 GJB5O95377 273 aa22.18■■□□□ 1.14
CHD3-204ENST00000439235 LILRA4P59901 499 aa22.18■■□□□ 1.14
CHD3-204ENST00000439235 SFMBT2Q5VUG0 894 aa22.18■■□□□ 1.14
CHD3-204ENST00000439235 TTC39CQ8N584 583 aa22.18■■□□□ 1.14
CHD3-204ENST00000439235 SHC3Q92529 594 aa22.18■■□□□ 1.14
CHD3-204ENST00000439235 SYN2Q92777 582 aaPredicted RBP22.18■■□□□ 1.14
CHD3-204ENST00000439235 PANX2Q96RD6 677 aa22.18■■□□□ 1.14
CHD3-204ENST00000439235 MMS19Q96T76 1030 aa22.18■■□□□ 1.14
CHD3-204ENST00000439235 DNAJC7Q99615 494 aa22.18■■□□□ 1.14
CHD3-204ENST00000439235 ARID3AQ99856 593 aa22.18■■□□□ 1.14
CHD3-204ENST00000439235 PAAF1Q9BRP4 392 aa22.18■■□□□ 1.14
CHD3-204ENST00000439235 ZBED2Q9BTP6 218 aa22.18■■□□□ 1.14
CHD3-204ENST00000439235 ZNHIT6Q9NWK9 470 aaKnown RBP22.18■■□□□ 1.14
CHD3-204ENST00000439235 ARHGEF37A1IGU5 675 aa22.17■■□□□ 1.14
CHD3-204ENST00000439235 SPTLC1O15269 473 aa22.17■■□□□ 1.14
CHD3-204ENST00000439235 B4GALT3O60512 393 aa22.17■■□□□ 1.14
CHD3-204ENST00000439235 CCDC172P0C7W6 258 aa22.17■■□□□ 1.14
CHD3-204ENST00000439235 ATP2A2P16615 1042 aaKnown RBP22.17■■□□□ 1.14
CHD3-204ENST00000439235 SOX5P35711 763 aa22.17■■□□□ 1.14
CHD3-204ENST00000439235 GOLGA8FQ08AF8 430 aa22.17■■□□□ 1.14
CHD3-204ENST00000439235 GOLGA8DPQ0D2H9 430 aa22.17■■□□□ 1.14
CHD3-204ENST00000439235 BTG3Q14201 252 aaPredicted RBP22.17■■□□□ 1.14
CHD3-204ENST00000439235 HABP4Q5JVS0 413 aaKnown RBP22.17■■□□□ 1.14
CHD3-204ENST00000439235 RASIP1Q5U651 963 aa22.17■■□□□ 1.14
CHD3-204ENST00000439235 TMCO2Q7Z6W1 182 aaPredicted RBP22.17■■□□□ 1.14
CHD3-204ENST00000439235 HERC6Q8IVU3 1022 aa22.17■■□□□ 1.14
CHD3-204ENST00000439235 COLEC11Q9BWP8 271 aa22.17■■□□□ 1.14
CHD3-204ENST00000439235 SMYD3Q9H7B4 428 aa22.17■■□□□ 1.14
CHD3-204ENST00000439235 DNAJB4Q9UDY4 337 aa22.17■■□□□ 1.14
CHD3-204ENST00000439235 COL4A6Q14031 1691 aa22.17■■□□□ 1.14
CHD3-204ENST00000439235 NRDCO43847 1150 aa22.16■■□□□ 1.14
CHD3-204ENST00000439235 HUS1O60921 280 aa22.16■■□□□ 1.14
CHD3-204ENST00000439235 KIF4AO95239 1232 aa22.16■■□□□ 1.14
CHD3-204ENST00000439235 ALDH2P05091 517 aa22.16■■□□□ 1.14
CHD3-204ENST00000439235 AARSP49588 968 aaKnown RBP eCLIP22.16■■□□□ 1.141e-6■■■■■ 36.1
CHD3-204ENST00000439235 HTRA4P83105 476 aaPredicted RBP22.16■■□□□ 1.14
CHD3-204ENST00000439235 ASIC2Q16515 512 aa22.16■■□□□ 1.14
CHD3-204ENST00000439235 DSTYKQ6XUX3 929 aa22.16■■□□□ 1.14
CHD3-204ENST00000439235 DPH6Q7L8W6 267 aa22.16■■□□□ 1.14
CHD3-204ENST00000439235 TOP6BLQ8N6T0 577 aa22.16■■□□□ 1.14
CHD3-204ENST00000439235 C3orf58Q8NDZ4 430 aa22.16■■□□□ 1.14
CHD3-204ENST00000439235 GPR88Q9GZN0 384 aa22.16■■□□□ 1.14
CHD3-204ENST00000439235 FAN1Q9Y2M0 1017 aa22.16■■□□□ 1.14
CHD3-204ENST00000439235 PRG3Q9Y2Y8 225 aaPredicted RBP22.16■■□□□ 1.14
CHD3-204ENST00000439235 INSL6Q9Y581 213 aa22.16■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms