RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 ESYT3A0FGR9 886 aa12.64□□□□□ -0.39
CCDC88A-207ENST00000436346 H0Y626 953 aa12.64□□□□□ -0.39
CCDC88A-207ENST00000436346 ZNF197O14709 1029 aa12.64□□□□□ -0.39
CCDC88A-207ENST00000436346 CEP70Q8NHQ1 597 aa12.64□□□□□ -0.39
CCDC88A-207ENST00000436346 HPDLQ96IR7 371 aa12.64□□□□□ -0.39
CCDC88A-207ENST00000436346 GPR63Q9BZJ6 419 aa12.64□□□□□ -0.39
CCDC88A-207ENST00000436346 CATSPERBQ9H7T0 1116 aa12.64□□□□□ -0.39
CCDC88A-207ENST00000436346 C17orf102A2RUQ5 167 aa12.64□□□□□ -0.39
CCDC88A-207ENST00000436346 ZNF286BP0CG31 522 aa12.64□□□□□ -0.39
CCDC88A-207ENST00000436346 ATP2C1P98194 919 aaPredicted RBP12.64□□□□□ -0.39
CCDC88A-207ENST00000436346 TMCO5AQ8N6Q1 288 aa12.64□□□□□ -0.39
CCDC88A-207ENST00000436346 SPATA18Q8TC71 538 aa12.64□□□□□ -0.39
CCDC88A-207ENST00000436346 PPP1R2P1Q96PQ5 205 aa12.64□□□□□ -0.39
CCDC88A-207ENST00000436346 REEP2Q9BRK0 252 aa12.64□□□□□ -0.39
CCDC88A-207ENST00000436346 KIAA0100Q14667 2235 aaKnown RBP12.64□□□□□ -0.39
CCDC88A-207ENST00000436346 MYO1GB0I1T2 1018 aa12.64□□□□□ -0.39
CCDC88A-207ENST00000436346 C11orf74Q86VG3 221 aa12.64□□□□□ -0.39
CCDC88A-207ENST00000436346 GIMAP4Q9NUV9 329 aa12.64□□□□□ -0.39
CCDC88A-207ENST00000436346 MTMR4Q9NYA4 1195 aa12.64□□□□□ -0.39
CCDC88A-207ENST00000436346 GMPSP49915 693 aaPredicted RBP12.64□□□□□ -0.39
CCDC88A-207ENST00000436346 SIRT2Q8IXJ6 389 aa12.64□□□□□ -0.39
CCDC88A-207ENST00000436346 NSUN4Q96CB9 384 aaKnown RBP12.64□□□□□ -0.39
CCDC88A-207ENST00000436346 CAPN10Q9HC96 672 aa12.64□□□□□ -0.39
CCDC88A-207ENST00000436346 MAN1C1Q9NR34 630 aa12.64□□□□□ -0.39
CCDC88A-207ENST00000436346 KCND2Q9NZV8 630 aa12.64□□□□□ -0.39
CCDC88A-207ENST00000436346 ZC3H7BQ9UGR2 993 aaKnown RBP12.64□□□□□ -0.39
CCDC88A-207ENST00000436346 ZNF609O15014 1411 aa12.64□□□□□ -0.39
CCDC88A-207ENST00000436346 EYA4O95677 639 aa12.64□□□□□ -0.39
CCDC88A-207ENST00000436346 HIST1H2AGP0C0S8 130 aaPredicted RBP12.64□□□□□ -0.39
CCDC88A-207ENST00000436346 HIST1H2ADP20671 130 aa12.64□□□□□ -0.39
CCDC88A-207ENST00000436346 NMT1P30419 496 aaKnown RBP12.64□□□□□ -0.39
CCDC88A-207ENST00000436346 CNGA3Q16281 694 aa12.64□□□□□ -0.39
CCDC88A-207ENST00000436346 HIST1H2AHQ96KK5 128 aa12.64□□□□□ -0.39
CCDC88A-207ENST00000436346 RNPC3Q96LT9 517 aaKnown RBP12.64□□□□□ -0.39
CCDC88A-207ENST00000436346 SLITRK1Q96PX8 696 aa12.64□□□□□ -0.39
CCDC88A-207ENST00000436346 YME1L1Q96TA2 773 aa12.64□□□□□ -0.39
CCDC88A-207ENST00000436346 HIST1H2AJQ99878 128 aa12.64□□□□□ -0.39
CCDC88A-207ENST00000436346 H2AFJQ9BTM1 129 aa12.64□□□□□ -0.39
CCDC88A-207ENST00000436346 ADNPQ9H2P0 1102 aa12.64□□□□□ -0.39
CCDC88A-207ENST00000436346 NAGPAQ9UK23 515 aa12.64□□□□□ -0.39
CCDC88A-207ENST00000436346 SNX5Q9Y5X3 404 aa12.64□□□□□ -0.39
CCDC88A-207ENST00000436346 ZC3H11AO75152 810 aaKnown RBP eCLIP12.64□□□□□ -0.39
CCDC88A-207ENST00000436346 FOXO4P98177 505 aa12.64□□□□□ -0.39
CCDC88A-207ENST00000436346 RCOR2Q8IZ40 523 aa12.64□□□□□ -0.39
CCDC88A-207ENST00000436346 SPATA16Q9BXB7 569 aa12.64□□□□□ -0.39
CCDC88A-207ENST00000436346 ALG13Q9NP73 1137 aaKnown RBP12.64□□□□□ -0.39
CCDC88A-207ENST00000436346 FAM32AQ9Y421 112 aaKnown RBP12.64□□□□□ -0.39
CCDC88A-207ENST00000436346 YY1P25490 414 aa12.64□□□□□ -0.39
CCDC88A-207ENST00000436346 BAATQ14032 418 aaPredicted RBP12.64□□□□□ -0.39
CCDC88A-207ENST00000436346 C6orf10Q5SRN2 563 aa12.64□□□□□ -0.39
CCDC88A-207ENST00000436346 MARCH10Q8NA82 808 aaPredicted RBP12.64□□□□□ -0.39
CCDC88A-207ENST00000436346 VMP1Q96GC9 406 aa12.64□□□□□ -0.39
CCDC88A-207ENST00000436346 L3MBTL3Q96JM7 780 aaPredicted RBP12.64□□□□□ -0.39
CCDC88A-207ENST00000436346 ACTR5Q9H9F9 607 aaPredicted RBP12.64□□□□□ -0.39
CCDC88A-207ENST00000436346 DAGLAQ9Y4D2 1042 aa12.64□□□□□ -0.39
CCDC88A-207ENST00000436346 PDS5AQ29RF7 1337 aaKnown RBP12.63□□□□□ -0.39
CCDC88A-207ENST00000436346 CYP4A22Q5TCH4 519 aa12.63□□□□□ -0.39
CCDC88A-207ENST00000436346 RFFLQ8WZ73 363 aa12.63□□□□□ -0.39
CCDC88A-207ENST00000436346 NT5C1AQ9BXI3 368 aa12.63□□□□□ -0.39
CCDC88A-207ENST00000436346 STAU2Q9NUL3 570 aaKnown RBP eCLIP12.63□□□□□ -0.39
CCDC88A-207ENST00000436346 TECPR2O15040 1411 aa12.63□□□□□ -0.39
CCDC88A-207ENST00000436346 MYL2P10916 166 aa12.63□□□□□ -0.39
CCDC88A-207ENST00000436346 TEDDM1Q5T9Z0 273 aa12.63□□□□□ -0.39
CCDC88A-207ENST00000436346 SLC25A41Q8N5S1 370 aa12.63□□□□□ -0.39
CCDC88A-207ENST00000436346 YY1AP1Q9H869 796 aa12.63□□□□□ -0.39
CCDC88A-207ENST00000436346 ASCC3Q8N3C0 2202 aaKnown RBP12.63□□□□□ -0.39
CCDC88A-207ENST00000436346 DYNC1LI2O43237 492 aaPredicted RBP12.63□□□□□ -0.39
CCDC88A-207ENST00000436346 FMO5P49326 533 aa12.63□□□□□ -0.39
CCDC88A-207ENST00000436346 PID1Q7Z2X4 250 aa12.63□□□□□ -0.39
CCDC88A-207ENST00000436346 TSEN34Q9BSV6 310 aaKnown RBP12.63□□□□□ -0.39
CCDC88A-207ENST00000436346 CYP2C9P11712 490 aa12.63□□□□□ -0.39
CCDC88A-207ENST00000436346 PIGHQ14442 188 aaPredicted RBP12.63□□□□□ -0.39
CCDC88A-207ENST00000436346 SCUBE2Q9NQ36 999 aa12.63□□□□□ -0.39
CCDC88A-207ENST00000436346 SGSM1Q2NKQ1 1148 aa12.63□□□□□ -0.39
CCDC88A-207ENST00000436346 IPMKQ8NFU5 416 aa12.63□□□□□ -0.39
CCDC88A-207ENST00000436346 MOV10L1Q9BXT6 1211 aaKnown RBP12.63□□□□□ -0.39
CCDC88A-207ENST00000436346 ZNF70Q9UC06 446 aaPredicted RBP12.63□□□□□ -0.39
CCDC88A-207ENST00000436346 KIF13AQ9H1H9 1805 aa12.63□□□□□ -0.39
CCDC88A-207ENST00000436346 ATMINO43313 823 aaPredicted RBP12.63□□□□□ -0.39
CCDC88A-207ENST00000436346 ZNF543Q08ER8 600 aa12.63□□□□□ -0.39
CCDC88A-207ENST00000436346 SMIM5Q71RC9 77 aa12.63□□□□□ -0.39
CCDC88A-207ENST00000436346 CYGBQ8WWM9 190 aa12.63□□□□□ -0.39
CCDC88A-207ENST00000436346 HPS3Q969F9 1004 aa12.63□□□□□ -0.39
CCDC88A-207ENST00000436346 ECT2Q9H8V3 914 aa12.63□□□□□ -0.39
CCDC88A-207ENST00000436346 AP3B1O00203 1094 aa12.63□□□□□ -0.39
CCDC88A-207ENST00000436346 FAM200BP0CF97 657 aa12.63□□□□□ -0.39
CCDC88A-207ENST00000436346 TAF1DQ9H5J8 278 aaPredicted RBP12.63□□□□□ -0.39
CCDC88A-207ENST00000436346 ZSCAN32Q9NX65 697 aa12.63□□□□□ -0.39
CCDC88A-207ENST00000436346 ARHGAP26Q9UNA1 814 aa12.63□□□□□ -0.39
CCDC88A-207ENST00000436346 GUCY1A2P33402 732 aa12.63□□□□□ -0.39
CCDC88A-207ENST00000436346 SOAT1P35610 550 aa12.63□□□□□ -0.39
CCDC88A-207ENST00000436346 VPS72Q15906 364 aa12.63□□□□□ -0.39
CCDC88A-207ENST00000436346 PTRHD1Q6GMV3 140 aaKnown RBP12.63□□□□□ -0.39
CCDC88A-207ENST00000436346 SRBD1Q8N5C6 995 aaKnown RBP12.63□□□□□ -0.39
CCDC88A-207ENST00000436346 PHF21AQ96BD5 680 aa12.63□□□□□ -0.39
CCDC88A-207ENST00000436346 ALX1Q15699 326 aa12.62□□□□□ -0.39
CCDC88A-207ENST00000436346 ZNF555Q8NEP9 628 aa12.62□□□□□ -0.39
CCDC88A-207ENST00000436346 USP33Q8TEY7 942 aa12.62□□□□□ -0.39
CCDC88A-207ENST00000436346 DDX47Q9H0S4 455 aaKnown RBP12.62□□□□□ -0.39
CCDC88A-207ENST00000436346 ZNF556Q9HAH1 456 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms