RNA–Protein interactions for RNA: ENST00000434233.2

LINC00339-204, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best)

Gene LINC00339, Length 929 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-204ENST00000434233 TRIM65Q6PJ69 517 aa13.23□□□□□ -0.29
LINC00339-204ENST00000434233 SLC39A11Q8N1S5 342 aa13.23□□□□□ -0.29
LINC00339-204ENST00000434233 C3orf58Q8NDZ4 430 aa13.23□□□□□ -0.29
LINC00339-204ENST00000434233 RABGGTAQ92696 567 aa13.23□□□□□ -0.29
LINC00339-204ENST00000434233 MRFAP1L1Q96HT8 127 aa13.23□□□□□ -0.29
LINC00339-204ENST00000434233 IGSF21Q96ID5 467 aa13.23□□□□□ -0.29
LINC00339-204ENST00000434233 NT5C1BQ96P26 610 aa13.23□□□□□ -0.29
LINC00339-204ENST00000434233 PI4K2AQ9BTU6 479 aa13.23□□□□□ -0.29
LINC00339-204ENST00000434233 NUP58Q9BVL2 599 aa13.23□□□□□ -0.29
LINC00339-204ENST00000434233 PLVAPQ9BX97 442 aa13.23□□□□□ -0.29
LINC00339-204ENST00000434233 APOBEC3GQ9HC16 384 aaKnown RBP13.23□□□□□ -0.29
LINC00339-204ENST00000434233 SPG21Q9NZD8 308 aa13.23□□□□□ -0.29
LINC00339-204ENST00000434233 ADAM28Q9UKQ2 775 aa13.23□□□□□ -0.29
LINC00339-204ENST00000434233 NUB1Q9Y5A7 615 aa13.23□□□□□ -0.29
LINC00339-204ENST00000434233 ARHGEF37A1IGU5 675 aa13.22□□□□□ -0.29
LINC00339-204ENST00000434233 LCHNA4D1U4 455 aa13.22□□□□□ -0.29
LINC00339-204ENST00000434233 LINC01553A4QN01 128 aa13.22□□□□□ -0.29
LINC00339-204ENST00000434233 NT5C1B-RDH14C9J2C7 533 aa13.22□□□□□ -0.29
LINC00339-204ENST00000434233 M0QZQ0 153 aa13.22□□□□□ -0.29
LINC00339-204ENST00000434233 SPTLC1O15269 473 aa13.22□□□□□ -0.29
LINC00339-204ENST00000434233 KIF4AO95239 1232 aa13.22□□□□□ -0.29
LINC00339-204ENST00000434233 RB1P06400 928 aa13.22□□□□□ -0.29
LINC00339-204ENST00000434233 P4HA1P13674 534 aa13.22□□□□□ -0.29
LINC00339-204ENST00000434233 IGFBP6P24592 240 aaPredicted RBP13.22□□□□□ -0.29
LINC00339-204ENST00000434233 PPM1AP35813 382 aa13.22□□□□□ -0.29
LINC00339-204ENST00000434233 NOP14P78316 857 aaKnown RBP13.22□□□□□ -0.29
LINC00339-204ENST00000434233 ELAVL2Q12926 359 aaKnown RBP13.22□□□□□ -0.29
LINC00339-204ENST00000434233 TIGD5Q53EQ6 642 aa13.22□□□□□ -0.29
LINC00339-204ENST00000434233 PHLDB3Q6NSJ2 640 aa13.22□□□□□ -0.29
LINC00339-204ENST00000434233 DSTYKQ6XUX3 929 aa13.22□□□□□ -0.29
LINC00339-204ENST00000434233 LIMS2Q7Z4I7 341 aa13.22□□□□□ -0.29
LINC00339-204ENST00000434233 NEK11Q8NG66 645 aa13.22□□□□□ -0.29
LINC00339-204ENST00000434233 SUSD3Q96L08 255 aa13.22□□□□□ -0.29
LINC00339-204ENST00000434233 SENP8Q96LD8 212 aa13.22□□□□□ -0.29
LINC00339-204ENST00000434233 PCMTD1Q96MG8 357 aaPredicted RBP13.22□□□□□ -0.29
LINC00339-204ENST00000434233 SAMD11Q96NU1 681 aa13.22□□□□□ -0.29
LINC00339-204ENST00000434233 LSM14BQ9BX40 385 aaKnown RBP13.22□□□□□ -0.29
LINC00339-204ENST00000434233 PBX4Q9BYU1 374 aa13.22□□□□□ -0.29
LINC00339-204ENST00000434233 FAM124BQ9H5Z6 455 aaPredicted RBP13.22□□□□□ -0.29
LINC00339-204ENST00000434233 CYP3A43Q9HB55 503 aa13.22□□□□□ -0.29
LINC00339-204ENST00000434233 SIX2Q9NPC8 291 aa13.22□□□□□ -0.29
LINC00339-204ENST00000434233 MARCH5Q9NX47 278 aa13.22□□□□□ -0.29
LINC00339-204ENST00000434233 APEX2Q9UBZ4 518 aa13.22□□□□□ -0.29
LINC00339-204ENST00000434233 STK39Q9UEW8 545 aa13.22□□□□□ -0.29
LINC00339-204ENST00000434233 FBXL5Q9UKA1 691 aa13.22□□□□□ -0.29
LINC00339-204ENST00000434233 PRG3Q9Y2Y8 225 aaPredicted RBP13.22□□□□□ -0.29
LINC00339-204ENST00000434233 GBF1Q92538 1859 aa13.22□□□□□ -0.29
LINC00339-204ENST00000434233 ITIH6Q6UXX5 1313 aa13.21□□□□□ -0.29
LINC00339-204ENST00000434233 PDE4DIPQ5VU43 2346 aa13.21□□□□□ -0.29
LINC00339-204ENST00000434233 CYB561D2O14569 222 aa13.21□□□□□ -0.29
LINC00339-204ENST00000434233 ADCY5O95622 1261 aa13.21□□□□□ -0.29
LINC00339-204ENST00000434233 EFEMP2O95967 443 aa13.21□□□□□ -0.29
LINC00339-204ENST00000434233 ITGB1P05556 798 aa13.21□□□□□ -0.29
LINC00339-204ENST00000434233 MYOGP15173 224 aa13.21□□□□□ -0.29
LINC00339-204ENST00000434233 TBXAS1P24557 533 aaPredicted RBP13.21□□□□□ -0.29
LINC00339-204ENST00000434233 BRCC3P46736 316 aa13.21□□□□□ -0.29
LINC00339-204ENST00000434233 KLK7P49862 253 aa13.21□□□□□ -0.29
LINC00339-204ENST00000434233 TNNC1P63316 161 aa13.21□□□□□ -0.29
LINC00339-204ENST00000434233 SMAD3P84022 425 aaKnown RBP13.21□□□□□ -0.29
LINC00339-204ENST00000434233 PLCB3Q01970 1234 aa13.21□□□□□ -0.29
LINC00339-204ENST00000434233 GCNT1Q02742 428 aa13.21□□□□□ -0.29
LINC00339-204ENST00000434233 LRMPQ12912 555 aa13.21□□□□□ -0.29
LINC00339-204ENST00000434233 FIGNQ5HY92 759 aa13.21□□□□□ -0.29
LINC00339-204ENST00000434233 SPOPLQ6IQ16 392 aa13.21□□□□□ -0.29
LINC00339-204ENST00000434233 ENOSF1Q7L5Y1 443 aa13.21□□□□□ -0.29
LINC00339-204ENST00000434233 VSTM4Q8IW00 320 aa13.21□□□□□ -0.29
LINC00339-204ENST00000434233 TOP6BLQ8N6T0 577 aa13.21□□□□□ -0.29
LINC00339-204ENST00000434233 JAKMIP2Q96AA8 810 aa13.21□□□□□ -0.29
LINC00339-204ENST00000434233 IQCDQ96DY2 449 aa13.21□□□□□ -0.29
LINC00339-204ENST00000434233 EDEM3Q9BZQ6 932 aa13.21□□□□□ -0.29
LINC00339-204ENST00000434233 UBE2TQ9NPD8 197 aaPredicted RBP13.21□□□□□ -0.29
LINC00339-204ENST00000434233 NXF1Q9UBU9 619 aaKnown RBP13.21□□□□□ -0.29
LINC00339-204ENST00000434233 YBX2Q9Y2T7 364 aaKnown RBP13.21□□□□□ -0.29
LINC00339-204ENST00000434233 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.21□□□□□ -0.29
LINC00339-204ENST00000434233 SNX9Q9Y5X1 595 aa13.21□□□□□ -0.29
LINC00339-204ENST00000434233 KIAA1671Q9BY89 1806 aa13.2□□□□□ -0.3
LINC00339-204ENST00000434233 C5orf67F2Z3F1 127 aa13.2□□□□□ -0.3
LINC00339-204ENST00000434233 F8W810 466 aa13.2□□□□□ -0.3
LINC00339-204ENST00000434233 SYN3O14994 580 aa13.2□□□□□ -0.3
LINC00339-204ENST00000434233 HUS1O60921 280 aa13.2□□□□□ -0.3
LINC00339-204ENST00000434233 TACC1O75410 805 aa13.2□□□□□ -0.3
LINC00339-204ENST00000434233 NOL4O94818 638 aa13.2□□□□□ -0.3
LINC00339-204ENST00000434233 CA3P07451 260 aa13.2□□□□□ -0.3
LINC00339-204ENST00000434233 UCHL3P15374 230 aa13.2□□□□□ -0.3
LINC00339-204ENST00000434233 TYMPP19971 482 aa13.2□□□□□ -0.3
LINC00339-204ENST00000434233 RFX1P22670 979 aa13.2□□□□□ -0.3
LINC00339-204ENST00000434233 PBX2P40425 430 aa13.2□□□□□ -0.3
LINC00339-204ENST00000434233 PBX3P40426 434 aa13.2□□□□□ -0.3
LINC00339-204ENST00000434233 MFAP3P55082 362 aa13.2□□□□□ -0.3
LINC00339-204ENST00000434233 ERVK-21P61565 698 aa13.2□□□□□ -0.3
LINC00339-204ENST00000434233 TAP1Q03518 808 aa13.2□□□□□ -0.3
LINC00339-204ENST00000434233 KRT17Q04695 432 aa13.2□□□□□ -0.3
LINC00339-204ENST00000434233 CUL2Q13617 745 aa13.2□□□□□ -0.3
LINC00339-204ENST00000434233 LRIT3Q3SXY7 679 aa13.2□□□□□ -0.3
LINC00339-204ENST00000434233 FUT10Q6P4F1 479 aa13.2□□□□□ -0.3
LINC00339-204ENST00000434233 RRAGAQ7L523 313 aa13.2□□□□□ -0.3
LINC00339-204ENST00000434233 DDX53Q86TM3 631 aaKnown RBP13.2□□□□□ -0.3
LINC00339-204ENST00000434233 ARHGEF19Q8IW93 802 aa13.2□□□□□ -0.3
LINC00339-204ENST00000434233 RNF168Q8IYW5 571 aaPredicted RBP13.2□□□□□ -0.3
LINC00339-204ENST00000434233 TMEM86AQ8N2M4 240 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms