RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 CLIC6Q96NY7 704 aa4.87□□□□□ -1.63
HMGB3-203ENST00000430118 DMRTA2Q96SC8 542 aa4.87□□□□□ -1.63
HMGB3-203ENST00000430118 APOL5Q9BWW9 433 aa4.87□□□□□ -1.63
HMGB3-203ENST00000430118 EIF2AQ9BY44 585 aaKnown RBP4.87□□□□□ -1.63
HMGB3-203ENST00000430118 VPS11Q9H270 941 aa4.87□□□□□ -1.63
HMGB3-203ENST00000430118 ZMAT3Q9HA38 289 aaKnown RBP4.87□□□□□ -1.63
HMGB3-203ENST00000430118 ZNF287Q9HBT7 754 aa4.87□□□□□ -1.63
HMGB3-203ENST00000430118 ZFP64Q9NPA5 681 aa4.87□□□□□ -1.63
HMGB3-203ENST00000430118 PIH1D1Q9NWS0 290 aaKnown RBP4.87□□□□□ -1.63
HMGB3-203ENST00000430118 ZFP69BQ9UJL9 534 aa4.87□□□□□ -1.63
HMGB3-203ENST00000430118 OGDHLQ9ULD0 1010 aa4.87□□□□□ -1.63
HMGB3-203ENST00000430118 LZTS1Q9Y250 596 aa4.87□□□□□ -1.63
HMGB3-203ENST00000430118 SNX13Q9Y5W8 968 aa4.87□□□□□ -1.63
HMGB3-203ENST00000430118 ACEP12821 1306 aa4.87□□□□□ -1.63
HMGB3-203ENST00000430118 BTAF1O14981 1849 aa4.86□□□□□ -1.63
HMGB3-203ENST00000430118 H3BUI4 141 aa4.86□□□□□ -1.63
HMGB3-203ENST00000430118 TEX33O43247 280 aa4.86□□□□□ -1.63
HMGB3-203ENST00000430118 MTSS1O43312 755 aa4.86□□□□□ -1.63
HMGB3-203ENST00000430118 PAPLNO95428 1278 aa4.86□□□□□ -1.63
HMGB3-203ENST00000430118 IL18BPO95998 194 aa4.86□□□□□ -1.63
HMGB3-203ENST00000430118 WNT11O96014 354 aa4.86□□□□□ -1.63
HMGB3-203ENST00000430118 THP07101 528 aa4.86□□□□□ -1.63
HMGB3-203ENST00000430118 C8BP07358 591 aa4.86□□□□□ -1.63
HMGB3-203ENST00000430118 COL6A1P12109 1028 aa4.86□□□□□ -1.63
HMGB3-203ENST00000430118 TSHRP16473 764 aa4.86□□□□□ -1.63
HMGB3-203ENST00000430118 EN2P19622 333 aaPredicted RBP4.86□□□□□ -1.63
HMGB3-203ENST00000430118 IL6STP40189 918 aaPredicted RBP4.86□□□□□ -1.63
HMGB3-203ENST00000430118 TECP42680 631 aa4.86□□□□□ -1.63
HMGB3-203ENST00000430118 STT3AP46977 705 aa4.86□□□□□ -1.63
HMGB3-203ENST00000430118 TLE1Q04724 770 aa4.86□□□□□ -1.63
HMGB3-203ENST00000430118 ICA1Q05084 483 aa4.86□□□□□ -1.63
HMGB3-203ENST00000430118 PLS1Q14651 629 aa4.86□□□□□ -1.63
HMGB3-203ENST00000430118 EIF4HQ15056 248 aaKnown RBP4.86□□□□□ -1.63
HMGB3-203ENST00000430118 CNGA2Q16280 664 aa4.86□□□□□ -1.63
HMGB3-203ENST00000430118 ZNF792Q3KQV3 632 aa4.86□□□□□ -1.63
HMGB3-203ENST00000430118 WDR72Q3MJ13 1102 aa4.86□□□□□ -1.63
HMGB3-203ENST00000430118 GLIPR1L2Q4G1C9 344 aa4.86□□□□□ -1.63
HMGB3-203ENST00000430118 FAM209BQ5JX69 171 aa4.86□□□□□ -1.63
HMGB3-203ENST00000430118 ARTNQ5T4W7 220 aa4.86□□□□□ -1.63
HMGB3-203ENST00000430118 PGBD2Q6P3X8 592 aa4.86□□□□□ -1.63
HMGB3-203ENST00000430118 TMC5Q6UXY8 1006 aa4.86□□□□□ -1.63
HMGB3-203ENST00000430118 RSPH3Q86UC2 560 aa4.86□□□□□ -1.63
HMGB3-203ENST00000430118 BCL6BQ8N143 479 aaPredicted RBP4.86□□□□□ -1.63
HMGB3-203ENST00000430118 DNAJC5GQ8N7S2 189 aa4.86□□□□□ -1.63
HMGB3-203ENST00000430118 TTLL6Q8N841 843 aa4.86□□□□□ -1.63
HMGB3-203ENST00000430118 TEX19Q8NA77 164 aa4.86□□□□□ -1.63
HMGB3-203ENST00000430118 OR7D4Q8NG98 312 aa4.86□□□□□ -1.63
HMGB3-203ENST00000430118 IFI44Q8TCB0 444 aa4.86□□□□□ -1.63
HMGB3-203ENST00000430118 BRIX1Q8TDN6 353 aaKnown RBP4.86□□□□□ -1.63
HMGB3-203ENST00000430118 KBTBD7Q8WVZ9 684 aa4.86□□□□□ -1.63
HMGB3-203ENST00000430118 CCT6BQ92526 530 aa4.86□□□□□ -1.63
HMGB3-203ENST00000430118 KIRREL1Q96J84 757 aa4.86□□□□□ -1.63
HMGB3-203ENST00000430118 SARS2Q9NP81 518 aaKnown RBP4.86□□□□□ -1.63
HMGB3-203ENST00000430118 SERHLQ9NQF3 203 aa4.86□□□□□ -1.63
HMGB3-203ENST00000430118 LANCL2Q9NS86 450 aa4.86□□□□□ -1.63
HMGB3-203ENST00000430118 SIDT1Q9NXL6 827 aaKnown RBP4.86□□□□□ -1.63
HMGB3-203ENST00000430118 PCDHA13Q9Y5I0 950 aa4.86□□□□□ -1.63
HMGB3-203ENST00000430118 A0A087WV62 115 aa4.85□□□□□ -1.63
HMGB3-203ENST00000430118 KPNA5O15131 536 aa4.85□□□□□ -1.63
HMGB3-203ENST00000430118 DAPK3O43293 454 aa4.85□□□□□ -1.63
HMGB3-203ENST00000430118 MED26O95402 600 aa4.85□□□□□ -1.63
HMGB3-203ENST00000430118 HSPA1AP0DMV8 641 aaKnown RBP4.85□□□□□ -1.63
HMGB3-203ENST00000430118 HSPA1BP0DMV9 641 aaKnown RBP4.85□□□□□ -1.63
HMGB3-203ENST00000430118 GAAP10253 952 aa4.85□□□□□ -1.63
HMGB3-203ENST00000430118 IL2RBP14784 551 aa4.85□□□□□ -1.63
HMGB3-203ENST00000430118 PFKLP17858 780 aa4.85□□□□□ -1.63
HMGB3-203ENST00000430118 MALP21145 153 aa4.85□□□□□ -1.63
HMGB3-203ENST00000430118 SLC6A9P48067 706 aa4.85□□□□□ -1.63
HMGB3-203ENST00000430118 RENBPP51606 427 aa4.85□□□□□ -1.63
HMGB3-203ENST00000430118 ITGA1P56199 1179 aa4.85□□□□□ -1.63
HMGB3-203ENST00000430118 CD69Q07108 199 aa4.85□□□□□ -1.63
HMGB3-203ENST00000430118 TARDBPQ13148 414 aaKnown RBP eCLIP4.85□□□□□ -1.63
HMGB3-203ENST00000430118 BLMHQ13867 455 aa4.85□□□□□ -1.63
HMGB3-203ENST00000430118 MAPRE1Q15691 268 aaKnown RBP4.85□□□□□ -1.63
HMGB3-203ENST00000430118 ATP2B3Q16720 1220 aa4.85□□□□□ -1.63
HMGB3-203ENST00000430118 GADL1Q6ZQY3 521 aa4.85□□□□□ -1.63
HMGB3-203ENST00000430118 Q6ZVL8 140 aa4.85□□□□□ -1.63
HMGB3-203ENST00000430118 B3GNT8Q7Z7M8 397 aa4.85□□□□□ -1.63
HMGB3-203ENST00000430118 TP53INP2Q8IXH6 220 aa4.85□□□□□ -1.63
HMGB3-203ENST00000430118 RNF152Q8N8N0 203 aa4.85□□□□□ -1.63
HMGB3-203ENST00000430118 TRIM63Q969Q1 353 aa4.85□□□□□ -1.63
HMGB3-203ENST00000430118 NMD3Q96D46 503 aaKnown RBP4.85□□□□□ -1.63
HMGB3-203ENST00000430118 TBATAQ96M53 351 aa4.85□□□□□ -1.63
HMGB3-203ENST00000430118 TACO1Q9BSH4 297 aaKnown RBP4.85□□□□□ -1.63
HMGB3-203ENST00000430118 MYLK2Q9H1R3 596 aa4.85□□□□□ -1.63
HMGB3-203ENST00000430118 ZNF552Q9H707 407 aaPredicted RBP4.85□□□□□ -1.63
HMGB3-203ENST00000430118 CORO2BQ9UQ03 480 aa4.85□□□□□ -1.63
HMGB3-203ENST00000430118 HCFC2Q9Y5Z7 792 aa4.85□□□□□ -1.63
HMGB3-203ENST00000430118 IGSF1Q8N6C5 1336 aa4.85□□□□□ -1.63
HMGB3-203ENST00000430118 USP47Q96K76 1375 aa4.85□□□□□ -1.63
HMGB3-203ENST00000430118 C10orf71Q711Q0 1435 aa4.85□□□□□ -1.63
HMGB3-203ENST00000430118 TNRC6CQ9HCJ0 1690 aaKnown RBP4.84□□□□□ -1.63
HMGB3-203ENST00000430118 A0A1W2PPC4 97 aa4.84□□□□□ -1.63
HMGB3-203ENST00000430118 POM121BA6NF01 834 aa4.84□□□□□ -1.63
HMGB3-203ENST00000430118 H0Y858 1186 aa4.84□□□□□ -1.63
HMGB3-203ENST00000430118 PEX10O60683 326 aa4.84□□□□□ -1.63
HMGB3-203ENST00000430118 PRAMEF4O60810 478 aa4.84□□□□□ -1.63
HMGB3-203ENST00000430118 KNG1P01042 644 aa4.84□□□□□ -1.63
HMGB3-203ENST00000430118 PARP1P09874 1014 aaKnown RBP4.84□□□□□ -1.63
HMGB3-203ENST00000430118 ABCB4P21439 1286 aa4.84□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms