RNA–Protein interactions for RNA: ENST00000418457.6

VPS41-206, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 532 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-206ENST00000418457 RLIMQ9NVW2 624 aa3.32□□□□□ -1.88
VPS41-206ENST00000418457 CEP72Q9P209 647 aa3.32□□□□□ -1.88
VPS41-206ENST00000418457 CFAP97Q9P2B7 532 aa3.32□□□□□ -1.88
VPS41-206ENST00000418457 STAP2Q9UGK3 403 aa3.32□□□□□ -1.88
VPS41-206ENST00000418457 ZDHHC8Q9ULC8 765 aa3.32□□□□□ -1.88
VPS41-206ENST00000418457 FRMPD2Q68DX3 1309 aaPredicted RBP3.32□□□□□ -1.88
VPS41-206ENST00000418457 RAB3GAP2Q9H2M9 1393 aa3.32□□□□□ -1.88
VPS41-206ENST00000418457 ARHGAP35Q9NRY4 1499 aa3.32□□□□□ -1.88
VPS41-206ENST00000418457 EFCAB5A4FU69 1503 aa3.32□□□□□ -1.88
VPS41-206ENST00000418457 WDR97A6NE52 1622 aa3.31□□□□□ -1.88
VPS41-206ENST00000418457 AQRO60306 1485 aaKnown RBP eCLIP3.31□□□□□ -1.88
VPS41-206ENST00000418457 LRRC9Q6ZRR7 1453 aa3.31□□□□□ -1.88
VPS41-206ENST00000418457 A0A1B0GTW7 788 aa3.31□□□□□ -1.88
VPS41-206ENST00000418457 CAPN8A6NHC0 703 aa3.31□□□□□ -1.88
VPS41-206ENST00000418457 KRTAP9-7A8MTY7 169 aa3.31□□□□□ -1.88
VPS41-206ENST00000418457 AHRRA9YTQ3 701 aa3.31□□□□□ -1.88
VPS41-206ENST00000418457 RNASET2O00584 256 aaKnown RBP3.31□□□□□ -1.88
VPS41-206ENST00000418457 PLSCR1O15162 318 aa3.31□□□□□ -1.88
VPS41-206ENST00000418457 RPS6KA4O75676 772 aa3.31□□□□□ -1.88
VPS41-206ENST00000418457 PRSS23O95084 383 aa3.31□□□□□ -1.88
VPS41-206ENST00000418457 MATN4O95460 622 aa3.31□□□□□ -1.88
VPS41-206ENST00000418457 AHSGP02765 367 aa3.31□□□□□ -1.88
VPS41-206ENST00000418457 GJB1P08034 283 aa3.31□□□□□ -1.88
VPS41-206ENST00000418457 PTTG1IPP53801 180 aa3.31□□□□□ -1.88
VPS41-206ENST00000418457 SOX8P57073 446 aa3.31□□□□□ -1.88
VPS41-206ENST00000418457 KIF22Q14807 665 aa3.31□□□□□ -1.88
VPS41-206ENST00000418457 LLGL1Q15334 1064 aa3.31□□□□□ -1.88
VPS41-206ENST00000418457 PDCD4Q53EL6 469 aaKnown RBP3.31□□□□□ -1.88
VPS41-206ENST00000418457 KHDC1LQ5JSQ8 128 aa3.31□□□□□ -1.88
VPS41-206ENST00000418457 CCDC149Q6ZUS6 474 aa3.31□□□□□ -1.88
VPS41-206ENST00000418457 MAEAQ7L5Y9 396 aa3.31□□□□□ -1.88
VPS41-206ENST00000418457 CHST15Q7LFX5 561 aaPredicted RBP3.31□□□□□ -1.88
VPS41-206ENST00000418457 SPRED1Q7Z699 444 aa3.31□□□□□ -1.88
VPS41-206ENST00000418457 KIAA0319LQ8IZA0 1049 aa3.31□□□□□ -1.88
VPS41-206ENST00000418457 ZNF276Q8N554 614 aa3.31□□□□□ -1.88
VPS41-206ENST00000418457 PNKPQ96T60 521 aa3.31□□□□□ -1.88
VPS41-206ENST00000418457 SLC46A2Q9BY10 475 aa3.31□□□□□ -1.88
VPS41-206ENST00000418457 CPA4Q9UI42 421 aa3.31□□□□□ -1.88
VPS41-206ENST00000418457 SLC45A2Q9UMX9 530 aa3.31□□□□□ -1.88
VPS41-206ENST00000418457 PCDHA6Q9UN73 950 aa3.31□□□□□ -1.88
VPS41-206ENST00000418457 CHST2Q9Y4C5 530 aa3.31□□□□□ -1.88
VPS41-206ENST00000418457 CUX1P39880 1505 aa3.3□□□□□ -1.88
VPS41-206ENST00000418457 FYCO1Q9BQS8 1478 aa3.3□□□□□ -1.88
VPS41-206ENST00000418457 A0A1W2PPL8 197 aa3.3□□□□□ -1.88
VPS41-206ENST00000418457 GAGE12BA1L429 117 aa3.3□□□□□ -1.88
VPS41-206ENST00000418457 GAGE12HA6NDE8 117 aa3.3□□□□□ -1.88
VPS41-206ENST00000418457 A6NNZ2 444 aa3.3□□□□□ -1.88
VPS41-206ENST00000418457 ZNF785A8K8V0 405 aa3.3□□□□□ -1.88
VPS41-206ENST00000418457 TPP1O14773 563 aa3.3□□□□□ -1.88
VPS41-206ENST00000418457 PRC1O43663 620 aa3.3□□□□□ -1.88
VPS41-206ENST00000418457 GPANK1O95872 356 aa3.3□□□□□ -1.88
VPS41-206ENST00000418457 ZBED1O96006 694 aa3.3□□□□□ -1.88
VPS41-206ENST00000418457 PEX11BO96011 259 aa3.3□□□□□ -1.88
VPS41-206ENST00000418457 GNAI2P04899 355 aa3.3□□□□□ -1.88
VPS41-206ENST00000418457 HLA-DOAP06340 250 aa3.3□□□□□ -1.88
VPS41-206ENST00000418457 C1SP09871 688 aa3.3□□□□□ -1.88
VPS41-206ENST00000418457 RARBP10826 455 aa3.3□□□□□ -1.88
VPS41-206ENST00000418457 FCER1AP12319 257 aa3.3□□□□□ -1.88
VPS41-206ENST00000418457 FGFR4P22455 802 aa3.3□□□□□ -1.88
VPS41-206ENST00000418457 BUD31P41223 144 aaPredicted RBP3.3□□□□□ -1.88
VPS41-206ENST00000418457 PHKA1P46020 1223 aa3.3□□□□□ -1.88
VPS41-206ENST00000418457 KCNJ5P48544 419 aa3.3□□□□□ -1.88
VPS41-206ENST00000418457 CACNB3P54284 484 aa3.3□□□□□ -1.88
VPS41-206ENST00000418457 USP14P54578 494 aa3.3□□□□□ -1.88
VPS41-206ENST00000418457 PSMC1P62191 440 aaKnown RBP3.3□□□□□ -1.88
VPS41-206ENST00000418457 MXRA7P84157 204 aa3.3□□□□□ -1.88
VPS41-206ENST00000418457 SLC25A3Q00325 362 aa3.3□□□□□ -1.88
VPS41-206ENST00000418457 EXOSC9Q06265 439 aaKnown RBP3.3□□□□□ -1.88
VPS41-206ENST00000418457 SLFN5Q08AF3 891 aa3.3□□□□□ -1.88
VPS41-206ENST00000418457 FOXE3Q13461 319 aa3.3□□□□□ -1.88
VPS41-206ENST00000418457 HLTFQ14527 1009 aaKnown RBP eCLIP3.3□□□□□ -1.88
VPS41-206ENST00000418457 CNN3Q15417 329 aaKnown RBP3.3□□□□□ -1.88
VPS41-206ENST00000418457 FOXR2Q6PJQ5 311 aa3.3□□□□□ -1.88
VPS41-206ENST00000418457 MAPKAPK5Q8IW41 473 aa3.3□□□□□ -1.88
VPS41-206ENST00000418457 CCAR1Q8IX12 1150 aaKnown RBP3.3□□□□□ -1.88
VPS41-206ENST00000418457 FAM156AQ8NDB6 213 aa3.3□□□□□ -1.88
VPS41-206ENST00000418457 SLC17A8Q8NDX2 589 aa3.3□□□□□ -1.88
VPS41-206ENST00000418457 TMIEQ8NEW7 156 aa3.3□□□□□ -1.88
VPS41-206ENST00000418457 SLC25A43Q8WUT9 341 aaPredicted RBP3.3□□□□□ -1.88
VPS41-206ENST00000418457 SCAMP4Q969E2 229 aa3.3□□□□□ -1.88
VPS41-206ENST00000418457 TTC17Q96AE7 1141 aa3.3□□□□□ -1.88
VPS41-206ENST00000418457 TIFAQ96CG3 184 aa3.3□□□□□ -1.88
VPS41-206ENST00000418457 MARS2Q96GW9 593 aaKnown RBP3.3□□□□□ -1.88
VPS41-206ENST00000418457 KLHL32Q96NJ5 620 aa3.3□□□□□ -1.88
VPS41-206ENST00000418457 NT5C1BQ96P26 610 aa3.3□□□□□ -1.88
VPS41-206ENST00000418457 ZSWIM1Q9BR11 485 aa3.3□□□□□ -1.88
VPS41-206ENST00000418457 TLR10Q9BXR5 811 aa3.3□□□□□ -1.88
VPS41-206ENST00000418457 TEX101Q9BY14 249 aa3.3□□□□□ -1.88
VPS41-206ENST00000418457 IMPG2Q9BZV3 1241 aa3.3□□□□□ -1.88
VPS41-206ENST00000418457 ZNF768Q9H5H4 540 aaKnown RBP3.3□□□□□ -1.88
VPS41-206ENST00000418457 ZMAT3Q9HA38 289 aaKnown RBP3.3□□□□□ -1.88
VPS41-206ENST00000418457 RSAD1Q9HA92 442 aa3.3□□□□□ -1.88
VPS41-206ENST00000418457 GPR35Q9HC97 309 aa3.3□□□□□ -1.88
VPS41-206ENST00000418457 ST6GALNAC1Q9NSC7 600 aaPredicted RBP3.3□□□□□ -1.88
VPS41-206ENST00000418457 PIH1D1Q9NWS0 290 aaKnown RBP3.3□□□□□ -1.88
VPS41-206ENST00000418457 RNF181Q9P0P0 153 aa3.3□□□□□ -1.88
VPS41-206ENST00000418457 USP25Q9UHP3 1055 aa3.3□□□□□ -1.88
VPS41-206ENST00000418457 L1RE1Q9UN81 338 aa3.3□□□□□ -1.88
VPS41-206ENST00000418457 CDYLQ9Y232 598 aa3.3□□□□□ -1.88
VPS41-206ENST00000418457 FPGT-TNNI3KV9GXZ4 949 aa3.3□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms