RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 PRUNE2Q8WUY3 3088 aa13.46□□□□□ -0.25
SKA1-203ENST00000417656 M0QZQ0 153 aa13.46□□□□□ -0.25
SKA1-203ENST00000417656 SYN3O14994 580 aa13.46□□□□□ -0.25
SKA1-203ENST00000417656 CETN3O15182 167 aa13.46□□□□□ -0.25
SKA1-203ENST00000417656 MAPK13O15264 365 aa13.46□□□□□ -0.25
SKA1-203ENST00000417656 ADH1AP07327 375 aa13.46□□□□□ -0.25
SKA1-203ENST00000417656 TRIM49P0CI25 452 aa13.46□□□□□ -0.25
SKA1-203ENST00000417656 TRIM49CP0CI26 452 aa13.46□□□□□ -0.25
SKA1-203ENST00000417656 EPCAMP16422 314 aa13.46□□□□□ -0.25
SKA1-203ENST00000417656 KCNA5P22460 613 aa13.46□□□□□ -0.25
SKA1-203ENST00000417656 PSMC2P35998 433 aaKnown RBP13.46□□□□□ -0.25
SKA1-203ENST00000417656 NDUFV1P49821 464 aa13.46□□□□□ -0.25
SKA1-203ENST00000417656 TAF6P49848 677 aa13.46□□□□□ -0.25
SKA1-203ENST00000417656 STX17P56962 302 aa13.46□□□□□ -0.25
SKA1-203ENST00000417656 LILRA4P59901 499 aa13.46□□□□□ -0.25
SKA1-203ENST00000417656 CREMQ03060 361 aa13.46□□□□□ -0.25
SKA1-203ENST00000417656 TFF2Q03403 129 aa13.46□□□□□ -0.25
SKA1-203ENST00000417656 DLX2Q07687 328 aaPredicted RBP13.46□□□□□ -0.25
SKA1-203ENST00000417656 BFSP1Q12934 665 aa13.46□□□□□ -0.25
SKA1-203ENST00000417656 DUOXA2Q1HG44 320 aa13.46□□□□□ -0.25
SKA1-203ENST00000417656 CTC1Q2NKJ3 1217 aa13.46□□□□□ -0.25
SKA1-203ENST00000417656 DPCR1Q3MIW9 517 aa13.46□□□□□ -0.25
SKA1-203ENST00000417656 SV2CQ496J9 727 aa13.46□□□□□ -0.25
SKA1-203ENST00000417656 VARS2Q5ST30 1063 aaKnown RBP13.46□□□□□ -0.25
SKA1-203ENST00000417656 TTI2Q6NXR4 508 aa13.46□□□□□ -0.25
SKA1-203ENST00000417656 GPR65Q8IYL9 337 aa13.46□□□□□ -0.25
SKA1-203ENST00000417656 CSGALNACT2Q8N6G5 542 aa13.46□□□□□ -0.25
SKA1-203ENST00000417656 LNX1Q8TBB1 728 aaPredicted RBP13.46□□□□□ -0.25
SKA1-203ENST00000417656 PARD3BQ8TEW8 1205 aa13.46□□□□□ -0.25
SKA1-203ENST00000417656 ZNF516Q92618 1163 aa13.46□□□□□ -0.25
SKA1-203ENST00000417656 HLA-CQ95604 372 aa13.46□□□□□ -0.25
SKA1-203ENST00000417656 DUSP9Q99956 384 aaKnown RBP13.46□□□□□ -0.25
SKA1-203ENST00000417656 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP13.46□□□□□ -0.25
SKA1-203ENST00000417656 MTRRQ9UBK8 725 aa13.46□□□□□ -0.25
SKA1-203ENST00000417656 TIMM13Q9Y5L4 95 aaPredicted RBP13.46□□□□□ -0.25
SKA1-203ENST00000417656 HCFC2Q9Y5Z7 792 aa13.46□□□□□ -0.25
SKA1-203ENST00000417656 BICDL2A1A5D9 508 aa13.45□□□□□ -0.26
SKA1-203ENST00000417656 FSD2A1L4K1 749 aa13.45□□□□□ -0.26
SKA1-203ENST00000417656 H3BQ06 376 aaPredicted RBP13.45□□□□□ -0.26
SKA1-203ENST00000417656 ADAM12O43184 909 aa13.45□□□□□ -0.26
SKA1-203ENST00000417656 NCK2O43639 380 aa13.45□□□□□ -0.26
SKA1-203ENST00000417656 EPB41P11171 864 aaKnown RBP13.45□□□□□ -0.26
SKA1-203ENST00000417656 ODC1P11926 461 aa13.45□□□□□ -0.26
SKA1-203ENST00000417656 KRT13P13646 458 aa13.45□□□□□ -0.26
SKA1-203ENST00000417656 KLRC2P26717 231 aa13.45□□□□□ -0.26
SKA1-203ENST00000417656 LTBRP36941 435 aa13.45□□□□□ -0.26
SKA1-203ENST00000417656 PNPLA4P41247 253 aa13.45□□□□□ -0.26
SKA1-203ENST00000417656 CLCN4P51793 760 aa13.45□□□□□ -0.26
SKA1-203ENST00000417656 VAMP7P51809 220 aa13.45□□□□□ -0.26
SKA1-203ENST00000417656 RBP5P82980 135 aa13.45□□□□□ -0.26
SKA1-203ENST00000417656 FKBP3Q00688 224 aaKnown RBP13.45□□□□□ -0.26
SKA1-203ENST00000417656 ADAM15Q13444 863 aa13.45□□□□□ -0.26
SKA1-203ENST00000417656 BIRC3Q13489 604 aa13.45□□□□□ -0.26
SKA1-203ENST00000417656 KCNC3Q14003 757 aa13.45□□□□□ -0.26
SKA1-203ENST00000417656 CLUL1Q15846 466 aa13.45□□□□□ -0.26
SKA1-203ENST00000417656 C1orf220Q5T0J3 134 aa13.45□□□□□ -0.26
SKA1-203ENST00000417656 PDXDC1Q6P996 788 aa13.45□□□□□ -0.26
SKA1-203ENST00000417656 ANKS3Q6ZW76 656 aa13.45□□□□□ -0.26
SKA1-203ENST00000417656 INTS8Q75QN2 995 aaKnown RBP13.45□□□□□ -0.26
SKA1-203ENST00000417656 TRAPPC11Q7Z392 1133 aa13.45□□□□□ -0.26
SKA1-203ENST00000417656 LRRC52Q8N7C0 313 aa13.45□□□□□ -0.26
SKA1-203ENST00000417656 TMC2Q8TDI7 906 aa13.45□□□□□ -0.26
SKA1-203ENST00000417656 SLC22A17Q8WUG5 538 aa13.45□□□□□ -0.26
SKA1-203ENST00000417656 SENP8Q96LD8 212 aa13.45□□□□□ -0.26
SKA1-203ENST00000417656 MKNK1Q9BUB5 465 aa13.45□□□□□ -0.26
SKA1-203ENST00000417656 CLEC1BQ9P126 229 aa13.45□□□□□ -0.26
SKA1-203ENST00000417656 FNIP2Q9P278 1114 aa13.45□□□□□ -0.26
SKA1-203ENST00000417656 COG5Q9UP83 839 aa13.45□□□□□ -0.26
SKA1-203ENST00000417656 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.44□□□□□ -0.26
SKA1-203ENST00000417656 SLC16A3O15427 465 aaKnown RBP13.44□□□□□ -0.26
SKA1-203ENST00000417656 GLUD1P00367 558 aa13.44□□□□□ -0.26
SKA1-203ENST00000417656 SRGAP2BP0DMP2 458 aa13.44□□□□□ -0.26
SKA1-203ENST00000417656 CLDN10P78369 228 aa13.44□□□□□ -0.26
SKA1-203ENST00000417656 CTXN3Q4LDR2 81 aa13.44□□□□□ -0.26
SKA1-203ENST00000417656 CCDC183Q5T5S1 534 aa13.44□□□□□ -0.26
SKA1-203ENST00000417656 TDRD10Q5VZ19 366 aaKnown RBP13.44□□□□□ -0.26
SKA1-203ENST00000417656 ZNF280DQ6N043 979 aa13.44□□□□□ -0.26
SKA1-203ENST00000417656 RSPO2Q6UXX9 243 aaPredicted RBP13.44□□□□□ -0.26
SKA1-203ENST00000417656 RBM43Q6ZSC3 357 aaKnown RBP13.44□□□□□ -0.26
SKA1-203ENST00000417656 PPFIBP1Q86W92 1011 aa13.44□□□□□ -0.26
SKA1-203ENST00000417656 MLKLQ8NB16 471 aa13.44□□□□□ -0.26
SKA1-203ENST00000417656 APPL2Q8NEU8 664 aa13.44□□□□□ -0.26
SKA1-203ENST00000417656 CASP10Q92851 521 aa13.44□□□□□ -0.26
SKA1-203ENST00000417656 BORCS6Q96GS4 357 aa13.44□□□□□ -0.26
SKA1-203ENST00000417656 CLSTN3Q9BQT9 956 aa13.44□□□□□ -0.26
SKA1-203ENST00000417656 MMRN2Q9H8L6 949 aa13.44□□□□□ -0.26
SKA1-203ENST00000417656 TMEM63CQ9P1W3 806 aa13.44□□□□□ -0.26
SKA1-203ENST00000417656 CDY1Q9Y6F8 540 aa13.44□□□□□ -0.26
SKA1-203ENST00000417656 KPNA7A9QM74 516 aa13.43□□□□□ -0.26
SKA1-203ENST00000417656 CYB561D2O14569 222 aa13.43□□□□□ -0.26
SKA1-203ENST00000417656 PHACTR2O75167 634 aa13.43□□□□□ -0.26
SKA1-203ENST00000417656 TYMPP19971 482 aa13.43□□□□□ -0.26
SKA1-203ENST00000417656 PAX3P23760 479 aa13.43□□□□□ -0.26
SKA1-203ENST00000417656 NLRP12P59046 1061 aa13.43□□□□□ -0.26
SKA1-203ENST00000417656 YWHAHQ04917 246 aaPredicted RBP13.43□□□□□ -0.26
SKA1-203ENST00000417656 DCAF17Q5H9S7 520 aaPredicted RBP13.43□□□□□ -0.26
SKA1-203ENST00000417656 ANKRD54Q6NXT1 300 aa13.43□□□□□ -0.26
SKA1-203ENST00000417656 FOXR2Q6PJQ5 311 aa13.43□□□□□ -0.26
SKA1-203ENST00000417656 USP37Q86T82 979 aa13.43□□□□□ -0.26
SKA1-203ENST00000417656 PALB2Q86YC2 1186 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms