RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 TPGS2Q68CL5 300 aa12.58□□□□□ -0.4
USP4-204ENST00000416417 FAM173BQ6P4H8 233 aa12.58□□□□□ -0.4
USP4-204ENST00000416417 VITQ6UXI7 678 aa12.58□□□□□ -0.4
USP4-204ENST00000416417 RTL10Q7L3V2 364 aa12.58□□□□□ -0.4
USP4-204ENST00000416417 RAD54LQ92698 747 aa12.58□□□□□ -0.4
USP4-204ENST00000416417 ELSPBP1Q96BH3 223 aa12.58□□□□□ -0.4
USP4-204ENST00000416417 ZNF512Q96ME7 567 aaPredicted RBP12.58□□□□□ -0.4
USP4-204ENST00000416417 MSTO1Q9BUK6 570 aa12.58□□□□□ -0.4
USP4-204ENST00000416417 BCO2Q9BYV7 579 aa12.58□□□□□ -0.4
USP4-204ENST00000416417 RPF1Q9H9Y2 349 aaKnown RBP12.58□□□□□ -0.4
USP4-204ENST00000416417 PLEKHA5Q9HAU0 1116 aa12.58□□□□□ -0.4
USP4-204ENST00000416417 AVENQ9NQS1 362 aaPredicted RBP12.58□□□□□ -0.4
USP4-204ENST00000416417 KCND2Q9NZV8 630 aa12.58□□□□□ -0.4
USP4-204ENST00000416417 ODF2LQ9ULJ1 636 aa12.58□□□□□ -0.4
USP4-204ENST00000416417 UBQLN1Q9UMX0 589 aaKnown RBP12.58□□□□□ -0.4
USP4-204ENST00000416417 NDRG2Q9UN36 371 aaKnown RBP12.58□□□□□ -0.4
USP4-204ENST00000416417 YIPF1Q9Y548 306 aa12.58□□□□□ -0.4
USP4-204ENST00000416417 CLIC4Q9Y696 253 aa12.58□□□□□ -0.4
USP4-204ENST00000416417 CITO14578 2027 aa12.58□□□□□ -0.4
USP4-204ENST00000416417 FRYLO94915 3013 aa12.58□□□□□ -0.4
USP4-204ENST00000416417 PDCD11Q14690 1871 aaKnown RBP12.58□□□□□ -0.4
USP4-204ENST00000416417 OGTO15294 1046 aa12.57□□□□□ -0.4
USP4-204ENST00000416417 TRAK2O60296 914 aa12.57□□□□□ -0.4
USP4-204ENST00000416417 ACOT2P49753 483 aa12.57□□□□□ -0.4
USP4-204ENST00000416417 PFKPQ01813 784 aa12.57□□□□□ -0.4
USP4-204ENST00000416417 DUSP4Q13115 394 aa12.57□□□□□ -0.4
USP4-204ENST00000416417 STXBP5Q5T5C0 1151 aa12.57□□□□□ -0.4
USP4-204ENST00000416417 IQCEQ6IPM2 695 aa12.57□□□□□ -0.4
USP4-204ENST00000416417 DYMQ7RTS9 669 aa12.57□□□□□ -0.4
USP4-204ENST00000416417 KIAA2013Q8IYS2 634 aa12.57□□□□□ -0.4
USP4-204ENST00000416417 ELMOD1Q8N336 334 aa12.57□□□□□ -0.4
USP4-204ENST00000416417 ATAD1Q8NBU5 361 aa12.57□□□□□ -0.4
USP4-204ENST00000416417 SHKBP1Q8TBC3 707 aa12.57□□□□□ -0.4
USP4-204ENST00000416417 RSPRY1Q96DX4 576 aa12.57□□□□□ -0.4
USP4-204ENST00000416417 EPSTI1Q96J88 318 aa12.57□□□□□ -0.4
USP4-204ENST00000416417 ASB16Q96NS5 453 aa12.57□□□□□ -0.4
USP4-204ENST00000416417 FIZ1Q96SL8 496 aa12.57□□□□□ -0.4
USP4-204ENST00000416417 DNAJC25Q9H1X3 360 aa12.57□□□□□ -0.4
USP4-204ENST00000416417 BRD9Q9H8M2 597 aa12.57□□□□□ -0.4
USP4-204ENST00000416417 PARVGQ9HBI0 331 aa12.57□□□□□ -0.4
USP4-204ENST00000416417 ZFP14Q9HCL3 533 aa12.57□□□□□ -0.4
USP4-204ENST00000416417 MYH11P35749 1972 aa12.57□□□□□ -0.4
USP4-204ENST00000416417 A0A0B4J269 797 aa12.57□□□□□ -0.4
USP4-204ENST00000416417 A0A1W2PRU2 124 aa12.57□□□□□ -0.4
USP4-204ENST00000416417 H0YCG3 227 aa12.57□□□□□ -0.4
USP4-204ENST00000416417 ZNF197O14709 1029 aa12.57□□□□□ -0.4
USP4-204ENST00000416417 LAMTOR5O43504 91 aa12.57□□□□□ -0.4
USP4-204ENST00000416417 TBCAO75347 108 aaKnown RBP12.57□□□□□ -0.4
USP4-204ENST00000416417 GDI1P31150 447 aa12.57□□□□□ -0.4
USP4-204ENST00000416417 ZNF131P52739 623 aa12.57□□□□□ -0.4
USP4-204ENST00000416417 USP37Q86T82 979 aa12.57□□□□□ -0.4
USP4-204ENST00000416417 ZSCAN18Q8TBC5 510 aaPredicted RBP12.57□□□□□ -0.4
USP4-204ENST00000416417 SENP8Q96LD8 212 aa12.57□□□□□ -0.4
USP4-204ENST00000416417 AK8Q96MA6 479 aa12.57□□□□□ -0.4
USP4-204ENST00000416417 CLIC6Q96NY7 704 aa12.57□□□□□ -0.4
USP4-204ENST00000416417 HINFPQ9BQA5 517 aa12.57□□□□□ -0.4
USP4-204ENST00000416417 TRMT61BQ9BVS5 477 aaKnown RBP12.57□□□□□ -0.4
USP4-204ENST00000416417 SLITRK6Q9H5Y7 841 aa12.57□□□□□ -0.4
USP4-204ENST00000416417 ZNF334Q9HCZ1 680 aaPredicted RBP12.57□□□□□ -0.4
USP4-204ENST00000416417 ASAH2Q9NR71 780 aa12.57□□□□□ -0.4
USP4-204ENST00000416417 DAXXQ9UER7 740 aaPredicted RBP12.57□□□□□ -0.4
USP4-204ENST00000416417 KCNG1Q9UIX4 513 aa12.57□□□□□ -0.4
USP4-204ENST00000416417 CPSF3Q9UKF6 684 aaKnown RBP12.57□□□□□ -0.4
USP4-204ENST00000416417 OAZ2O95190 189 aa12.56□□□□□ -0.4
USP4-204ENST00000416417 PIGRP01833 764 aa12.56□□□□□ -0.4
USP4-204ENST00000416417 CYP3A5P20815 502 aa12.56□□□□□ -0.4
USP4-204ENST00000416417 LONP1P36776 959 aaKnown RBP12.56□□□□□ -0.4
USP4-204ENST00000416417 ID4P47928 161 aa12.56□□□□□ -0.4
USP4-204ENST00000416417 AARSP49588 968 aaKnown RBP eCLIP12.56□□□□□ -0.4
USP4-204ENST00000416417 LILRA4P59901 499 aa12.56□□□□□ -0.4
USP4-204ENST00000416417 CEBPZQ03701 1054 aaKnown RBP12.56□□□□□ -0.4
USP4-204ENST00000416417 FZD5Q13467 585 aa12.56□□□□□ -0.4
USP4-204ENST00000416417 SPATA1Q5VX52 437 aa12.56□□□□□ -0.4
USP4-204ENST00000416417 C9orf57Q5W0N0 161 aa12.56□□□□□ -0.4
USP4-204ENST00000416417 OVOS1Q6IE37 1185 aa12.56□□□□□ -0.4
USP4-204ENST00000416417 SFR1Q86XK3 245 aa12.56□□□□□ -0.4
USP4-204ENST00000416417 TMC8Q8IU68 726 aa12.56□□□□□ -0.4
USP4-204ENST00000416417 ZSWIM2Q8NEG5 633 aa12.56□□□□□ -0.4
USP4-204ENST00000416417 BEST2Q8NFU1 509 aa12.56□□□□□ -0.4
USP4-204ENST00000416417 TTC8Q8TAM2 541 aa12.56□□□□□ -0.4
USP4-204ENST00000416417 SMARCD2Q92925 531 aa12.56□□□□□ -0.4
USP4-204ENST00000416417 FAM84AQ96KN4 292 aa12.56□□□□□ -0.4
USP4-204ENST00000416417 LRRC3Q9BY71 257 aa12.56□□□□□ -0.4
USP4-204ENST00000416417 UPF2Q9HAU5 1272 aaKnown RBP12.56□□□□□ -0.4
USP4-204ENST00000416417 FOXD4L1Q9NU39 408 aa12.56□□□□□ -0.4
USP4-204ENST00000416417 TBC1D7Q9P0N9 293 aa12.56□□□□□ -0.4
USP4-204ENST00000416417 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.56□□□□□ -0.4
USP4-204ENST00000416417 MTMR11A4FU01 709 aa12.55□□□□□ -0.4
USP4-204ENST00000416417 HEPACAM2A8MVW5 462 aa12.55□□□□□ -0.4
USP4-204ENST00000416417 KCNA1Q09470 495 aa12.55□□□□□ -0.4
USP4-204ENST00000416417 TMEM132DQ14C87 1099 aa12.55□□□□□ -0.4
USP4-204ENST00000416417 SCARA3Q6AZY7 606 aa12.55□□□□□ -0.4
USP4-204ENST00000416417 ADALQ6DHV7 355 aa12.55□□□□□ -0.4
USP4-204ENST00000416417 ZNF852Q6ZMS4 543 aa12.55□□□□□ -0.4
USP4-204ENST00000416417 MAP4K3Q8IVH8 894 aa12.55□□□□□ -0.4
USP4-204ENST00000416417 KCTD17Q8N5Z5 321 aa12.55□□□□□ -0.4
USP4-204ENST00000416417 OR10T2Q8NGX3 314 aa12.55□□□□□ -0.4
USP4-204ENST00000416417 LARP4BQ92615 738 aaKnown RBP12.55□□□□□ -0.4
USP4-204ENST00000416417 LPIN3Q9BQK8 851 aa12.55□□□□□ -0.4
USP4-204ENST00000416417 PTPRZ1P23471 2315 aaPredicted RBP12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms