RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 SPATA24Q86W54 205 aa11.82□□□□□ -0.52
PTPRF-204ENST00000412568 LRRC8CQ8TDW0 803 aa11.82□□□□□ -0.52
PTPRF-204ENST00000412568 ASAP3Q8TDY4 903 aa11.82□□□□□ -0.52
PTPRF-204ENST00000412568 ATP8B4Q8TF62 1192 aa11.82□□□□□ -0.52
PTPRF-204ENST00000412568 HASPINQ8TF76 798 aa11.82□□□□□ -0.52
PTPRF-204ENST00000412568 SCYL1Q96KG9 808 aa11.82□□□□□ -0.52
PTPRF-204ENST00000412568 ELAC2Q9BQ52 826 aaKnown RBP11.82□□□□□ -0.52
PTPRF-204ENST00000412568 SENP7Q9BQF6 1050 aa11.82□□□□□ -0.52
PTPRF-204ENST00000412568 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.82□□□□□ -0.52
PTPRF-204ENST00000412568 PRG3Q9Y2Y8 225 aaPredicted RBP11.82□□□□□ -0.52
PTPRF-204ENST00000412568 TRIM66O15016 1216 aa11.81□□□□□ -0.52
PTPRF-204ENST00000412568 ADRB2P07550 413 aa11.81□□□□□ -0.52
PTPRF-204ENST00000412568 YY1P25490 414 aa11.81□□□□□ -0.52
PTPRF-204ENST00000412568 MAGEA9P43362 315 aa11.81□□□□□ -0.52
PTPRF-204ENST00000412568 PDIA2Q13087 525 aaKnown RBP11.81□□□□□ -0.52
PTPRF-204ENST00000412568 SEPT6Q14141 434 aa11.81□□□□□ -0.52
PTPRF-204ENST00000412568 HSDL1Q3SXM5 330 aa11.81□□□□□ -0.52
PTPRF-204ENST00000412568 NUGGCQ68CJ6 796 aa11.81□□□□□ -0.52
PTPRF-204ENST00000412568 SIAH1Q8IUQ4 282 aa11.81□□□□□ -0.52
PTPRF-204ENST00000412568 SYT17Q9BSW7 474 aa11.81□□□□□ -0.52
PTPRF-204ENST00000412568 NT5C1AQ9BXI3 368 aa11.81□□□□□ -0.52
PTPRF-204ENST00000412568 KLHL8Q9P2G9 620 aaPredicted RBP11.81□□□□□ -0.52
PTPRF-204ENST00000412568 PPP2R3BQ9Y5P8 575 aa11.81□□□□□ -0.52
PTPRF-204ENST00000412568 KDM3BQ7LBC6 1761 aa11.81□□□□□ -0.52
PTPRF-204ENST00000412568 FAM187AA6NFU0 413 aa11.81□□□□□ -0.52
PTPRF-204ENST00000412568 KIAA0391O15091 583 aaKnown RBP11.81□□□□□ -0.52
PTPRF-204ENST00000412568 P4HA2O15460 535 aa11.81□□□□□ -0.52
PTPRF-204ENST00000412568 MT-ND3P03897 115 aa11.81□□□□□ -0.52
PTPRF-204ENST00000412568 KRT7P08729 469 aa11.81□□□□□ -0.52
PTPRF-204ENST00000412568 GARTP22102 1010 aa11.81□□□□□ -0.52
PTPRF-204ENST00000412568 PSMC4P43686 418 aa11.81□□□□□ -0.52
PTPRF-204ENST00000412568 AP3M2P53677 418 aa11.81□□□□□ -0.52
PTPRF-204ENST00000412568 ADCY2Q08462 1091 aa11.81□□□□□ -0.52
PTPRF-204ENST00000412568 TFDP2Q14188 446 aa11.81□□□□□ -0.52
PTPRF-204ENST00000412568 RAPH1Q70E73 1250 aa11.81□□□□□ -0.52
PTPRF-204ENST00000412568 VPS52Q8N1B4 723 aa11.81□□□□□ -0.52
PTPRF-204ENST00000412568 CFAP57Q96MR6 1250 aa11.81□□□□□ -0.52
PTPRF-204ENST00000412568 AGAP3Q96P47 875 aa11.81□□□□□ -0.52
PTPRF-204ENST00000412568 CNOT10Q9H9A5 744 aaKnown RBP11.81□□□□□ -0.52
PTPRF-204ENST00000412568 CISHQ9NSE2 258 aa11.81□□□□□ -0.52
PTPRF-204ENST00000412568 REXO2Q9Y3B8 237 aaKnown RBP11.81□□□□□ -0.52
PTPRF-204ENST00000412568 HES2Q9Y543 173 aa11.81□□□□□ -0.52
PTPRF-204ENST00000412568 GLI1P08151 1106 aa11.81□□□□□ -0.52
PTPRF-204ENST00000412568 PRLRP16471 622 aa11.81□□□□□ -0.52
PTPRF-204ENST00000412568 MUTP22033 750 aa11.81□□□□□ -0.52
PTPRF-204ENST00000412568 PTGER2P43116 358 aa11.81□□□□□ -0.52
PTPRF-204ENST00000412568 SNCBQ16143 134 aa11.81□□□□□ -0.52
PTPRF-204ENST00000412568 ACAD10Q6JQN1 1059 aa11.81□□□□□ -0.52
PTPRF-204ENST00000412568 PHLDB3Q6NSJ2 640 aa11.81□□□□□ -0.52
PTPRF-204ENST00000412568 JAMLQ86YT9 394 aa11.81□□□□□ -0.52
PTPRF-204ENST00000412568 CEP120Q8N960 986 aa11.81□□□□□ -0.52
PTPRF-204ENST00000412568 APPL2Q8NEU8 664 aa11.81□□□□□ -0.52
PTPRF-204ENST00000412568 DNAJB3Q8WWF6 145 aa11.81□□□□□ -0.52
PTPRF-204ENST00000412568 ARHGEF26Q96DR7 871 aa11.81□□□□□ -0.52
PTPRF-204ENST00000412568 METTL5Q9NRN9 209 aaKnown RBP11.81□□□□□ -0.52
PTPRF-204ENST00000412568 SCN11AQ9UI33 1791 aa11.81□□□□□ -0.52
PTPRF-204ENST00000412568 RASA4BC9J798 803 aa11.8□□□□□ -0.52
PTPRF-204ENST00000412568 RASA4O43374 803 aa11.8□□□□□ -0.52
PTPRF-204ENST00000412568 SUN1O94901 812 aa11.8□□□□□ -0.52
PTPRF-204ENST00000412568 SRGAP2BP0DMP2 458 aa11.8□□□□□ -0.52
PTPRF-204ENST00000412568 PPP2R2AP63151 447 aa11.8□□□□□ -0.52
PTPRF-204ENST00000412568 FAM133BQ5BKY9 247 aaKnown RBP11.8□□□□□ -0.52
PTPRF-204ENST00000412568 MPZL3Q6UWV2 235 aa11.8□□□□□ -0.52
PTPRF-204ENST00000412568 REPS2Q8NFH8 660 aa11.8□□□□□ -0.52
PTPRF-204ENST00000412568 CASKIN2Q8WXE0 1202 aa11.8□□□□□ -0.52
PTPRF-204ENST00000412568 KCTD10Q9H3F6 313 aa11.8□□□□□ -0.52
PTPRF-204ENST00000412568 IFT122Q9HBG6 1241 aa11.8□□□□□ -0.52
PTPRF-204ENST00000412568 GTF3C4Q9UKN8 822 aa11.8□□□□□ -0.52
PTPRF-204ENST00000412568 TIMM13Q9Y5L4 95 aaPredicted RBP11.8□□□□□ -0.52
PTPRF-204ENST00000412568 MRPL42Q9Y6G3 142 aaKnown RBP11.8□□□□□ -0.52
PTPRF-204ENST00000412568 GOLGA8RI6L899 631 aa11.8□□□□□ -0.52
PTPRF-204ENST00000412568 CST8O60676 142 aa11.8□□□□□ -0.52
PTPRF-204ENST00000412568 THPOP40225 353 aa11.8□□□□□ -0.52
PTPRF-204ENST00000412568 AP1B1Q10567 949 aa11.8□□□□□ -0.52
PTPRF-204ENST00000412568 MCUQ8NE86 351 aa11.8□□□□□ -0.52
PTPRF-204ENST00000412568 FBXO41Q8TF61 875 aa11.8□□□□□ -0.52
PTPRF-204ENST00000412568 ARL8AQ96BM9 186 aa11.8□□□□□ -0.52
PTPRF-204ENST00000412568 HVCN1Q96D96 273 aa11.8□□□□□ -0.52
PTPRF-204ENST00000412568 AIPL1Q9NZN9 384 aa11.8□□□□□ -0.52
PTPRF-204ENST00000412568 RAB21Q9UL25 225 aa11.8□□□□□ -0.52
PTPRF-204ENST00000412568 KLRG2A4D1S0 409 aaPredicted RBP11.8□□□□□ -0.52
PTPRF-204ENST00000412568 TGFB3P10600 412 aa11.8□□□□□ -0.52
PTPRF-204ENST00000412568 EIF3EP60228 445 aaKnown RBP11.8□□□□□ -0.52
PTPRF-204ENST00000412568 IL9RQ01113 521 aa11.8□□□□□ -0.52
PTPRF-204ENST00000412568 TADA2BQ86TJ2 420 aa11.8□□□□□ -0.52
PTPRF-204ENST00000412568 PPM1NQ8N819 430 aa11.8□□□□□ -0.52
PTPRF-204ENST00000412568 TMEM161BQ8NDZ6 487 aa11.8□□□□□ -0.52
PTPRF-204ENST00000412568 DPP3Q9NY33 737 aa11.8□□□□□ -0.52
PTPRF-204ENST00000412568 G3BP2Q9UN86 482 aaKnown RBP11.8□□□□□ -0.52
PTPRF-204ENST00000412568 LRRC37A3O60309 1634 aa11.8□□□□□ -0.52
PTPRF-204ENST00000412568 BAZ2AQ9UIF9 1905 aaKnown RBP11.79□□□□□ -0.52
PTPRF-204ENST00000412568 B3GAT3O94766 335 aa11.79□□□□□ -0.52
PTPRF-204ENST00000412568 MYBL1P10243 752 aa11.79□□□□□ -0.52
PTPRF-204ENST00000412568 GLRA2P23416 452 aa11.79□□□□□ -0.52
PTPRF-204ENST00000412568 IRAK1P51617 712 aa11.79□□□□□ -0.52
PTPRF-204ENST00000412568 KYNUQ16719 465 aa11.79□□□□□ -0.52
PTPRF-204ENST00000412568 P3H1Q32P28 736 aa11.79□□□□□ -0.52
PTPRF-204ENST00000412568 HIBCHQ6NVY1 386 aaPredicted RBP11.79□□□□□ -0.52
PTPRF-204ENST00000412568 PCGF5Q86SE9 256 aa11.79□□□□□ -0.52
PTPRF-204ENST00000412568 ALG13Q9NP73 1137 aaKnown RBP11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 122 ms