RNA–Protein interactions for RNA: ENST00000409251.7

PTPRN-202, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 1 (best) BASIC

Gene PTPRN, Length 3,622 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-202ENST00000409251 GRHL1Q9NZI5 618 aa13.72□□□□□ -0.21
PTPRN-202ENST00000409251 PI4K2BG5E9Z4 385 aa13.72□□□□□ -0.21
PTPRN-202ENST00000409251 CALUO43852 315 aaPredicted RBP13.72□□□□□ -0.21
PTPRN-202ENST00000409251 AHCYL1O43865 530 aa13.72□□□□□ -0.21
PTPRN-202ENST00000409251 BANF1O75531 89 aa13.72□□□□□ -0.21
PTPRN-202ENST00000409251 USP1O94782 785 aa13.72□□□□□ -0.21
PTPRN-202ENST00000409251 NT5C2P49902 561 aa13.72□□□□□ -0.21
PTPRN-202ENST00000409251 BACE1P56817 501 aa13.72□□□□□ -0.21
PTPRN-202ENST00000409251 GPR162Q16538 588 aa13.72□□□□□ -0.21
PTPRN-202ENST00000409251 TREML2Q5T2D2 321 aa13.72□□□□□ -0.21
PTPRN-202ENST00000409251 ZNF513Q8N8E2 541 aaPredicted RBP13.72□□□□□ -0.21
PTPRN-202ENST00000409251 RUNDC3BQ96NL0 473 aa13.72□□□□□ -0.21
PTPRN-202ENST00000409251 GLT8D2Q9H1C3 349 aa13.72□□□□□ -0.21
PTPRN-202ENST00000409251 VAV3Q9UKW4 847 aa13.72□□□□□ -0.21
PTPRN-202ENST00000409251 WASF2Q9Y6W5 498 aa13.72□□□□□ -0.21
PTPRN-202ENST00000409251 ICAM1P05362 532 aa13.71□□□□□ -0.21
PTPRN-202ENST00000409251 PLS3P13797 630 aa13.71□□□□□ -0.21
PTPRN-202ENST00000409251 LMNB1P20700 586 aa13.71□□□□□ -0.21
PTPRN-202ENST00000409251 PPP2R5CQ13362 524 aa13.71□□□□□ -0.21
PTPRN-202ENST00000409251 UGCGQ16739 394 aa13.71□□□□□ -0.21
PTPRN-202ENST00000409251 SGSM1Q2NKQ1 1148 aa13.71□□□□□ -0.21
PTPRN-202ENST00000409251 C11orf91Q3C1V1 193 aa13.71□□□□□ -0.21
PTPRN-202ENST00000409251 XKR9Q5GH70 373 aa13.71□□□□□ -0.21
PTPRN-202ENST00000409251 EMC10Q5UCC4 262 aa13.71□□□□□ -0.21
PTPRN-202ENST00000409251 CYFIP1Q7L576 1253 aa13.71□□□□□ -0.21
PTPRN-202ENST00000409251 FAM160B2Q86V87 743 aa13.71□□□□□ -0.21
PTPRN-202ENST00000409251 ZSWIM2Q8NEG5 633 aa13.71□□□□□ -0.21
PTPRN-202ENST00000409251 MAIP1Q8WWC4 291 aa13.71□□□□□ -0.21
PTPRN-202ENST00000409251 SLC5A5Q92911 643 aa13.71□□□□□ -0.21
PTPRN-202ENST00000409251 TTC17Q96AE7 1141 aa13.71□□□□□ -0.21
PTPRN-202ENST00000409251 ACSF2Q96CM8 615 aaPredicted RBP13.71□□□□□ -0.21
PTPRN-202ENST00000409251 HES6Q96HZ4 224 aa13.71□□□□□ -0.21
PTPRN-202ENST00000409251 EDEM3Q9BZQ6 932 aa13.71□□□□□ -0.21
PTPRN-202ENST00000409251 UBE2OQ9C0C9 1292 aaKnown RBP13.71□□□□□ -0.21
PTPRN-202ENST00000409251 GPRC5DQ9NZD1 345 aa13.71□□□□□ -0.21
PTPRN-202ENST00000409251 PARP2Q9UGN5 583 aa13.71□□□□□ -0.21
PTPRN-202ENST00000409251 CHKBQ9Y259 395 aa13.71□□□□□ -0.21
PTPRN-202ENST00000409251 LRRC37AA6NMS7 1700 aa13.71□□□□□ -0.21
PTPRN-202ENST00000409251 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.71□□□□□ -0.21
PTPRN-202ENST00000409251 CCDC195A0A1B0GUA6 201 aa13.71□□□□□ -0.21
PTPRN-202ENST00000409251 MAP3K7O43318 606 aa13.71□□□□□ -0.21
PTPRN-202ENST00000409251 RTN3O95197 1032 aaPredicted RBP13.71□□□□□ -0.21
PTPRN-202ENST00000409251 GSTT1P30711 240 aa13.71□□□□□ -0.21
PTPRN-202ENST00000409251 CHRNA3P32297 505 aa13.71□□□□□ -0.21
PTPRN-202ENST00000409251 SOX5P35711 763 aa13.71□□□□□ -0.21
PTPRN-202ENST00000409251 COILP38432 576 aaPredicted RBP13.71□□□□□ -0.21
PTPRN-202ENST00000409251 FYB2Q5VWT5 728 aa13.71□□□□□ -0.21
PTPRN-202ENST00000409251 BTNL9Q6UXG8 535 aa13.71□□□□□ -0.21
PTPRN-202ENST00000409251 KIFAP3Q92845 792 aa13.71□□□□□ -0.21
PTPRN-202ENST00000409251 DNAJC1Q96KC8 554 aaKnown RBP13.71□□□□□ -0.21
PTPRN-202ENST00000409251 LNPEPQ9UIQ6 1025 aa13.71□□□□□ -0.21
PTPRN-202ENST00000409251 FRMD4BQ9Y2L6 1034 aa13.71□□□□□ -0.21
PTPRN-202ENST00000409251 VWA5AO00534 786 aa13.71□□□□□ -0.22
PTPRN-202ENST00000409251 PGK2P07205 417 aa13.71□□□□□ -0.22
PTPRN-202ENST00000409251 CETPP11597 493 aa13.71□□□□□ -0.22
PTPRN-202ENST00000409251 RARGP13631 454 aa13.71□□□□□ -0.22
PTPRN-202ENST00000409251 MARK3P27448 753 aa13.71□□□□□ -0.22
PTPRN-202ENST00000409251 NOP14P78316 857 aaKnown RBP13.71□□□□□ -0.22
PTPRN-202ENST00000409251 C9orf131Q5VYM1 1079 aa13.71□□□□□ -0.22
PTPRN-202ENST00000409251 DCAF15Q66K64 600 aa13.71□□□□□ -0.22
PTPRN-202ENST00000409251 UPF1Q92900 1129 aaKnown RBP eCLIP13.71□□□□□ -0.22
PTPRN-202ENST00000409251 CEP63Q96MT8 703 aa13.71□□□□□ -0.22
PTPRN-202ENST00000409251 CHMP2BQ9UQN3 213 aa13.71□□□□□ -0.22
PTPRN-202ENST00000409251 K7ENM7 598 aa13.7□□□□□ -0.22
PTPRN-202ENST00000409251 PYGBP11216 843 aa13.7□□□□□ -0.22
PTPRN-202ENST00000409251 ESRRAP11474 423 aaPredicted RBP13.7□□□□□ -0.22
PTPRN-202ENST00000409251 ATP6V1C1P21283 382 aa13.7□□□□□ -0.22
PTPRN-202ENST00000409251 CEP70Q8NHQ1 597 aa13.7□□□□□ -0.22
PTPRN-202ENST00000409251 CENPTQ96BT3 561 aa13.7□□□□□ -0.22
PTPRN-202ENST00000409251 DCPSQ96C86 337 aaKnown RBP13.7□□□□□ -0.22
PTPRN-202ENST00000409251 PHF12Q96QT6 1004 aa13.7□□□□□ -0.22
PTPRN-202ENST00000409251 NUP85Q9BW27 656 aa13.7□□□□□ -0.22
PTPRN-202ENST00000409251 OCEL1Q9H607 264 aa13.7□□□□□ -0.22
PTPRN-202ENST00000409251 FAM187AA6NFU0 413 aa13.7□□□□□ -0.22
PTPRN-202ENST00000409251 NUDT17P0C025 328 aa13.7□□□□□ -0.22
PTPRN-202ENST00000409251 ATXN3P54252 364 aaPredicted RBP13.7□□□□□ -0.22
PTPRN-202ENST00000409251 PEX3P56589 373 aa13.7□□□□□ -0.22
PTPRN-202ENST00000409251 DYNLT1P63172 113 aa13.7□□□□□ -0.22
PTPRN-202ENST00000409251 DHX34Q14147 1143 aaKnown RBP13.7□□□□□ -0.22
PTPRN-202ENST00000409251 CBWD6Q4V339 395 aa13.7□□□□□ -0.22
PTPRN-202ENST00000409251 CBWD3Q5JTY5 395 aa13.7□□□□□ -0.22
PTPRN-202ENST00000409251 CBWD5Q5RIA9 395 aa13.7□□□□□ -0.22
PTPRN-202ENST00000409251 CCDC62Q6P9F0 684 aa13.7□□□□□ -0.22
PTPRN-202ENST00000409251 NLRP9Q7RTR0 991 aa13.7□□□□□ -0.22
PTPRN-202ENST00000409251 TRIM74Q86UV6 250 aa13.7□□□□□ -0.22
PTPRN-202ENST00000409251 TRIM73Q86UV7 250 aa13.7□□□□□ -0.22
PTPRN-202ENST00000409251 CLEC4DQ8WXI8 215 aa13.7□□□□□ -0.22
PTPRN-202ENST00000409251 SYN2Q92777 582 aaPredicted RBP13.7□□□□□ -0.22
PTPRN-202ENST00000409251 CLPTM1LQ96KA5 538 aa13.7□□□□□ -0.22
PTPRN-202ENST00000409251 GORASP1Q9BQQ3 440 aa13.7□□□□□ -0.22
PTPRN-202ENST00000409251 MXRA8Q9BRK3 442 aa13.7□□□□□ -0.22
PTPRN-202ENST00000409251 CARD9Q9H257 536 aa13.7□□□□□ -0.22
PTPRN-202ENST00000409251 SPON1Q9HCB6 807 aa13.7□□□□□ -0.22
PTPRN-202ENST00000409251 DDX18Q9NVP1 670 aaKnown RBP13.7□□□□□ -0.22
PTPRN-202ENST00000409251 SRRM3A6NNA2 597 aaPredicted RBP13.7□□□□□ -0.22
PTPRN-202ENST00000409251 PODXLO00592 558 aa13.7□□□□□ -0.22
PTPRN-202ENST00000409251 WDR46O15213 610 aaKnown RBP13.7□□□□□ -0.22
PTPRN-202ENST00000409251 SLC16A4O15374 487 aa13.7□□□□□ -0.22
PTPRN-202ENST00000409251 CREB3O43889 395 aa13.7□□□□□ -0.22
PTPRN-202ENST00000409251 GAS8O95995 478 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms