RNA–Protein interactions for RNA: ENST00000397545.8

CCDC40-204, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS P3 TSL 5 BASIC

Gene CCDC40, Length 4,294 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-204ENST00000397545 FIGNQ5HY92 759 aa11.34□□□□□ -0.59
CCDC40-204ENST00000397545 RBBP8NLQ8NC74 664 aaPredicted RBP11.34□□□□□ -0.59
CCDC40-204ENST00000397545 SPATA20Q8TB22 786 aa11.34□□□□□ -0.59
CCDC40-204ENST00000397545 CENPKQ9BS16 269 aa11.34□□□□□ -0.59
CCDC40-204ENST00000397545 THTPAQ9BU02 230 aa11.34□□□□□ -0.59
CCDC40-204ENST00000397545 TSSK1BQ9BXA7 367 aa11.34□□□□□ -0.59
CCDC40-204ENST00000397545 SUFUQ9UMX1 484 aa11.34□□□□□ -0.59
CCDC40-204ENST00000397545 KCNN4O15554 427 aa11.34□□□□□ -0.59
CCDC40-204ENST00000397545 CST8O60676 142 aa11.34□□□□□ -0.59
CCDC40-204ENST00000397545 SGPL1O95470 568 aa11.34□□□□□ -0.59
CCDC40-204ENST00000397545 SH3BGRP55822 239 aaPredicted RBP11.34□□□□□ -0.59
CCDC40-204ENST00000397545 COPS2P61201 443 aa11.34□□□□□ -0.59
CCDC40-204ENST00000397545 AP1B1Q10567 949 aa11.34□□□□□ -0.59
CCDC40-204ENST00000397545 LVRNQ6Q4G3 990 aa11.34□□□□□ -0.59
CCDC40-204ENST00000397545 ENOSF1Q7L5Y1 443 aa11.34□□□□□ -0.59
CCDC40-204ENST00000397545 GLIS3Q8NEA6 775 aa11.34□□□□□ -0.59
CCDC40-204ENST00000397545 SYN2Q92777 582 aaPredicted RBP11.34□□□□□ -0.59
CCDC40-204ENST00000397545 CBWD1Q9BRT8 395 aa11.34□□□□□ -0.59
CCDC40-204ENST00000397545 PCDHAC2Q9Y5I4 1007 aa11.34□□□□□ -0.59
CCDC40-204ENST00000397545 PDE4DIPQ5VU43 2346 aa11.34□□□□□ -0.59
CCDC40-204ENST00000397545 IL1R1P14778 569 aa11.33□□□□□ -0.6
CCDC40-204ENST00000397545 TARSP26639 723 aaKnown RBP11.33□□□□□ -0.6
CCDC40-204ENST00000397545 TAF1BQ53T94 588 aaPredicted RBP11.33□□□□□ -0.6
CCDC40-204ENST00000397545 PID1Q7Z2X4 250 aa11.33□□□□□ -0.6
CCDC40-204ENST00000397545 KDELC2Q7Z4H8 507 aa11.33□□□□□ -0.6
CCDC40-204ENST00000397545 BEGAINQ9BUH8 593 aa11.33□□□□□ -0.6
CCDC40-204ENST00000397545 ABT1Q9ULW3 272 aaKnown RBP11.33□□□□□ -0.6
CCDC40-204ENST00000397545 HLA-DRAP01903 254 aa11.33□□□□□ -0.6
CCDC40-204ENST00000397545 RBP3P10745 1247 aa11.33□□□□□ -0.6
CCDC40-204ENST00000397545 PRLRP16471 622 aa11.33□□□□□ -0.6
CCDC40-204ENST00000397545 ADORA2BP29275 332 aa11.33□□□□□ -0.6
CCDC40-204ENST00000397545 CIITAP33076 1130 aa11.33□□□□□ -0.6
CCDC40-204ENST00000397545 NCOA4Q13772 614 aa11.33□□□□□ -0.6
CCDC40-204ENST00000397545 KIF19Q2TAC6 998 aa11.33□□□□□ -0.6
CCDC40-204ENST00000397545 SUPT20HL1Q3ZLR7 823 aa11.33□□□□□ -0.6
CCDC40-204ENST00000397545 PACS2Q86VP3 889 aa11.33□□□□□ -0.6
CCDC40-204ENST00000397545 RASSF3Q86WH2 238 aa11.33□□□□□ -0.6
CCDC40-204ENST00000397545 CBWD2Q8IUF1 395 aa11.33□□□□□ -0.6
CCDC40-204ENST00000397545 C4orf32Q8N8J7 132 aa11.33□□□□□ -0.6
CCDC40-204ENST00000397545 AGBL1Q96MI9 1066 aa11.33□□□□□ -0.6
CCDC40-204ENST00000397545 TMBIM4Q9HC24 238 aa11.33□□□□□ -0.6
CCDC40-204ENST00000397545 IPO11Q9UI26 975 aaKnown RBP11.33□□□□□ -0.6
CCDC40-204ENST00000397545 ANGPTL3Q9Y5C1 460 aa11.33□□□□□ -0.6
CCDC40-204ENST00000397545 B2RBV5 119 aa11.33□□□□□ -0.6
CCDC40-204ENST00000397545 NEMP1O14524 444 aa11.33□□□□□ -0.6
CCDC40-204ENST00000397545 RGL2O15211 777 aa11.33□□□□□ -0.6
CCDC40-204ENST00000397545 DNAJC6O75061 913 aa11.33□□□□□ -0.6
CCDC40-204ENST00000397545 PDGFRAP16234 1089 aa11.33□□□□□ -0.6
CCDC40-204ENST00000397545 SCTRP47872 440 aa11.33□□□□□ -0.6
CCDC40-204ENST00000397545 AP2B1P63010 937 aa11.33□□□□□ -0.6
CCDC40-204ENST00000397545 ERVK-9P63128 1117 aa11.33□□□□□ -0.6
CCDC40-204ENST00000397545 NME3Q13232 169 aa11.33□□□□□ -0.6
CCDC40-204ENST00000397545 CUL3Q13618 768 aa11.33□□□□□ -0.6
CCDC40-204ENST00000397545 SPOUT1Q5T280 376 aaKnown RBP11.33□□□□□ -0.6
CCDC40-204ENST00000397545 FAXCQ5TGI0 409 aa11.33□□□□□ -0.6
CCDC40-204ENST00000397545 TRIM72Q6ZMU5 477 aa11.33□□□□□ -0.6
CCDC40-204ENST00000397545 RAB44Q7Z6P3 723 aaPredicted RBP11.33□□□□□ -0.6
CCDC40-204ENST00000397545 TMEM139Q8IV31 216 aa11.33□□□□□ -0.6
CCDC40-204ENST00000397545 CERS5Q8N5B7 392 aa11.33□□□□□ -0.6
CCDC40-204ENST00000397545 SLC20A1Q8WUM9 679 aa11.33□□□□□ -0.6
CCDC40-204ENST00000397545 POP1Q99575 1024 aaKnown RBP11.33□□□□□ -0.6
CCDC40-204ENST00000397545 SIK2Q9H0K1 926 aa11.33□□□□□ -0.6
CCDC40-204ENST00000397545 YY1AP1Q9H869 796 aa11.33□□□□□ -0.6
CCDC40-204ENST00000397545 CYP26B1Q9NR63 512 aa11.33□□□□□ -0.6
CCDC40-204ENST00000397545 EP400Q96L91 3159 aa11.33□□□□□ -0.6
CCDC40-204ENST00000397545 IRS2Q9Y4H2 1338 aa11.32□□□□□ -0.6
CCDC40-204ENST00000397545 MYBL2P10244 700 aa11.32□□□□□ -0.6
CCDC40-204ENST00000397545 PMLP29590 882 aa11.32□□□□□ -0.6
CCDC40-204ENST00000397545 HMGCS2P54868 508 aa11.32□□□□□ -0.6
CCDC40-204ENST00000397545 CREG2Q8IUH2 290 aa11.32□□□□□ -0.6
CCDC40-204ENST00000397545 CYP2W1Q8TAV3 490 aa11.32□□□□□ -0.6
CCDC40-204ENST00000397545 TARS2Q9BW92 718 aaKnown RBP11.32□□□□□ -0.6
CCDC40-204ENST00000397545 TRPV6Q9H1D0 765 aa11.32□□□□□ -0.6
CCDC40-204ENST00000397545 UPF3AQ9H1J1 476 aaKnown RBP11.32□□□□□ -0.6
CCDC40-204ENST00000397545 ABCF3Q9NUQ8 709 aa11.32□□□□□ -0.6
CCDC40-204ENST00000397545 PCDHB2Q9Y5E7 798 aa11.32□□□□□ -0.6
CCDC40-204ENST00000397545 BCORQ6W2J9 1755 aa11.32□□□□□ -0.6
CCDC40-204ENST00000397545 RCCD1A6NED2 376 aa11.32□□□□□ -0.6
CCDC40-204ENST00000397545 RASSF10A6NK89 507 aa11.32□□□□□ -0.6
CCDC40-204ENST00000397545 TBX3O15119 743 aa11.32□□□□□ -0.6
CCDC40-204ENST00000397545 CSPG5O95196 566 aa11.32□□□□□ -0.6
CCDC40-204ENST00000397545 MYBL1P10243 752 aa11.32□□□□□ -0.6
CCDC40-204ENST00000397545 ABCD1P33897 745 aa11.32□□□□□ -0.6
CCDC40-204ENST00000397545 ACTR2P61160 394 aa11.32□□□□□ -0.6
CCDC40-204ENST00000397545 CRY2Q49AN0 593 aa11.32□□□□□ -0.6
CCDC40-204ENST00000397545 ARMCX2Q7L311 632 aa11.32□□□□□ -0.6
CCDC40-204ENST00000397545 SP8Q8IXZ3 490 aa11.32□□□□□ -0.6
CCDC40-204ENST00000397545 CDC26Q8NHZ8 85 aa11.32□□□□□ -0.6
CCDC40-204ENST00000397545 VPS39Q96JC1 886 aa11.32□□□□□ -0.6
CCDC40-204ENST00000397545 SPC25Q9HBM1 224 aa11.32□□□□□ -0.6
CCDC40-204ENST00000397545 KRT82Q9NSB4 513 aa11.32□□□□□ -0.6
CCDC40-204ENST00000397545 BFARQ9NZS9 450 aa11.32□□□□□ -0.6
CCDC40-204ENST00000397545 SENP1Q9P0U3 644 aa11.32□□□□□ -0.6
CCDC40-204ENST00000397545 NYAP2Q9P242 653 aa11.32□□□□□ -0.6
CCDC40-204ENST00000397545 RNF103-CHMP3A0A140T963 221 aa11.32□□□□□ -0.6
CCDC40-204ENST00000397545 ANXA13P27216 316 aa11.32□□□□□ -0.6
CCDC40-204ENST00000397545 SLC1A1P43005 524 aa11.32□□□□□ -0.6
CCDC40-204ENST00000397545 SHROOM1Q2M3G4 852 aaPredicted RBP11.32□□□□□ -0.6
CCDC40-204ENST00000397545 KCNK18Q7Z418 384 aa11.32□□□□□ -0.6
CCDC40-204ENST00000397545 ZSWIM1Q9BR11 485 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms