RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 MAMLD1Q13495 774 aa21.88■■□□□ 1.09
CLK3-202ENST00000395066 TMED2Q15363 201 aa21.88■■□□□ 1.09
CLK3-202ENST00000395066 TMEM63BQ5T3F8 832 aa21.88■■□□□ 1.09
CLK3-202ENST00000395066 SAMD3Q8N6K7 520 aa21.88■■□□□ 1.09
CLK3-202ENST00000395066 HAUS1Q96CS2 278 aa21.88■■□□□ 1.09
CLK3-202ENST00000395066 RMDN2Q96LZ7 410 aa21.88■■□□□ 1.09
CLK3-202ENST00000395066 TGS1Q96RS0 853 aaKnown RBP21.88■■□□□ 1.09
CLK3-202ENST00000395066 PAIP2Q9BPZ3 127 aaKnown RBP21.88■■□□□ 1.09
CLK3-202ENST00000395066 AVENQ9NQS1 362 aaPredicted RBP21.88■■□□□ 1.09
CLK3-202ENST00000395066 DYNC1LI1Q9Y6G9 523 aaKnown RBP21.88■■□□□ 1.09
CLK3-202ENST00000395066 CYP1A1P04798 512 aaPredicted RBP21.88■■□□□ 1.09
CLK3-202ENST00000395066 GTF2H1P32780 548 aa21.88■■□□□ 1.09
CLK3-202ENST00000395066 PSMC4P43686 418 aa21.88■■□□□ 1.09
CLK3-202ENST00000395066 P3H1Q32P28 736 aa21.88■■□□□ 1.09
CLK3-202ENST00000395066 BRDTQ58F21 947 aaPredicted RBP21.88■■□□□ 1.09
CLK3-202ENST00000395066 WDR44Q5JSH3 913 aa21.88■■□□□ 1.09
CLK3-202ENST00000395066 CGB2Q6NT52 195 aa21.88■■□□□ 1.09
CLK3-202ENST00000395066 FAM47EQ6ZV65 393 aa21.88■■□□□ 1.09
CLK3-202ENST00000395066 FAM83AQ86UY5 434 aa21.88■■□□□ 1.09
CLK3-202ENST00000395066 SLC17A8Q8NDX2 589 aa21.88■■□□□ 1.09
CLK3-202ENST00000395066 SPIRE2Q8WWL2 714 aa21.88■■□□□ 1.09
CLK3-202ENST00000395066 ANKFY1Q9P2R3 1169 aa21.88■■□□□ 1.09
CLK3-202ENST00000395066 SPAG7O75391 227 aa21.87■■□□□ 1.09
CLK3-202ENST00000395066 ATP5DP30049 168 aa21.87■■□□□ 1.09
CLK3-202ENST00000395066 MCCD1P59942 119 aaPredicted RBP21.87■■□□□ 1.09
CLK3-202ENST00000395066 GHRHRQ02643 423 aa21.87■■□□□ 1.09
CLK3-202ENST00000395066 FASTKD3Q14CZ7 662 aaKnown RBP21.87■■□□□ 1.09
CLK3-202ENST00000395066 USP37Q86T82 979 aa21.87■■□□□ 1.09
CLK3-202ENST00000395066 ZNF526Q8TF50 670 aaPredicted RBP21.87■■□□□ 1.09
CLK3-202ENST00000395066 GRK7Q8WTQ7 553 aa21.87■■□□□ 1.09
CLK3-202ENST00000395066 FAXDC2Q96IV6 333 aa21.87■■□□□ 1.09
CLK3-202ENST00000395066 ARL2BPQ9Y2Y0 163 aa21.87■■□□□ 1.09
CLK3-202ENST00000395066 KIAA1217Q5T5P2 1943 aa21.87■■□□□ 1.09
CLK3-202ENST00000395066 A8MUI8 341 aa21.87■■□□□ 1.09
CLK3-202ENST00000395066 ACO1P21399 889 aaKnown RBP21.87■■□□□ 1.09
CLK3-202ENST00000395066 GNA15P30679 374 aa21.87■■□□□ 1.09
CLK3-202ENST00000395066 STX2P32856 288 aa21.87■■□□□ 1.09
CLK3-202ENST00000395066 ZACNQ401N2 412 aa21.87■■□□□ 1.09
CLK3-202ENST00000395066 SPATA21Q7Z572 469 aa21.87■■□□□ 1.09
CLK3-202ENST00000395066 CKAP2Q8WWK9 683 aa21.87■■□□□ 1.09
CLK3-202ENST00000395066 PRCCQ92733 491 aaPredicted RBP21.87■■□□□ 1.09
CLK3-202ENST00000395066 KIF9Q9HAQ2 790 aa21.87■■□□□ 1.09
CLK3-202ENST00000395066 TLR3O15455 904 aaKnown RBP21.86■■□□□ 1.09
CLK3-202ENST00000395066 C4BPAP04003 597 aaKnown RBP21.86■■□□□ 1.09
CLK3-202ENST00000395066 KRT16P08779 473 aa21.86■■□□□ 1.09
CLK3-202ENST00000395066 KCNA2P16389 499 aa21.86■■□□□ 1.09
CLK3-202ENST00000395066 ATF7P17544 494 aaPredicted RBP21.86■■□□□ 1.09
CLK3-202ENST00000395066 NOMO3P69849 1222 aa21.86■■□□□ 1.09
CLK3-202ENST00000395066 PAXIP1Q6ZW49 1069 aaPredicted RBP21.86■■□□□ 1.09
CLK3-202ENST00000395066 VSIG10LQ86VR7 867 aa21.86■■□□□ 1.09
CLK3-202ENST00000395066 CYP26B1Q9NR63 512 aa21.86■■□□□ 1.09
CLK3-202ENST00000395066 EDN1P05305 212 aa21.86■■□□□ 1.09
CLK3-202ENST00000395066 CCND1P24385 295 aa21.86■■□□□ 1.09
CLK3-202ENST00000395066 SLC1A1P43005 524 aa21.86■■□□□ 1.09
CLK3-202ENST00000395066 MIS18BP1Q6P0N0 1132 aa21.86■■□□□ 1.09
CLK3-202ENST00000395066 RHOT1Q8IXI2 618 aa21.86■■□□□ 1.09
CLK3-202ENST00000395066 FITM2Q8N6M3 262 aa21.86■■□□□ 1.09
CLK3-202ENST00000395066 SPOCK2Q92563 424 aa21.86■■□□□ 1.09
CLK3-202ENST00000395066 LPAR1Q92633 364 aa21.86■■□□□ 1.09
CLK3-202ENST00000395066 IFT74Q96LB3 600 aa21.86■■□□□ 1.09
CLK3-202ENST00000395066 RBM15Q96T37 977 aaKnown RBP eCLIP21.86■■□□□ 1.092e-6■■■■□ 20.2
CLK3-202ENST00000395066 PLCD4Q9BRC7 762 aa21.86■■□□□ 1.09
CLK3-202ENST00000395066 KIAA1683Q9H0B3 1180 aa21.86■■□□□ 1.09
CLK3-202ENST00000395066 ARHGAP28Q9P2N2 729 aa21.86■■□□□ 1.09
CLK3-202ENST00000395066 DNPEPQ9ULA0 475 aa21.86■■□□□ 1.09
CLK3-202ENST00000395066 FER1L6Q2WGJ9 1857 aa21.86■■□□□ 1.09
CLK3-202ENST00000395066 VWA5AO00534 786 aa21.85■■□□□ 1.09
CLK3-202ENST00000395066 FOXN2P32314 431 aa21.85■■□□□ 1.09
CLK3-202ENST00000395066 MGAT5Q09328 741 aa21.85■■□□□ 1.09
CLK3-202ENST00000395066 TXNRD3NBQ6F5E7 133 aa21.85■■□□□ 1.09
CLK3-202ENST00000395066 OR5B17Q8NGF7 314 aa21.85■■□□□ 1.09
CLK3-202ENST00000395066 TRIM6Q9C030 488 aaPredicted RBP21.85■■□□□ 1.09
CLK3-202ENST00000395066 BATF3Q9NR55 127 aa21.85■■□□□ 1.09
CLK3-202ENST00000395066 ARHGEF3Q9NR81 526 aa21.85■■□□□ 1.09
CLK3-202ENST00000395066 NUB1Q9Y5A7 615 aa21.85■■□□□ 1.09
CLK3-202ENST00000395066 EXTL3O43909 919 aa21.85■■□□□ 1.09
CLK3-202ENST00000395066 PIAS1O75925 651 aa21.85■■□□□ 1.09
CLK3-202ENST00000395066 GARTP22102 1010 aa21.85■■□□□ 1.09
CLK3-202ENST00000395066 CUL2Q13617 745 aa21.85■■□□□ 1.09
CLK3-202ENST00000395066 ENOSF1Q7L5Y1 443 aa21.85■■□□□ 1.09
CLK3-202ENST00000395066 RXFP1Q9HBX9 757 aa21.85■■□□□ 1.09
CLK3-202ENST00000395066 SAYSD1Q9NPB0 183 aa21.85■■□□□ 1.09
CLK3-202ENST00000395066 PDLIM7Q9NR12 457 aa21.85■■□□□ 1.09
CLK3-202ENST00000395066 AGO2Q9UKV8 859 aaKnown RBP21.85■■□□□ 1.09
CLK3-202ENST00000395066 PSME4Q14997 1843 aa21.85■■□□□ 1.09
CLK3-202ENST00000395066 RASA4BC9J798 803 aa21.84■■□□□ 1.09
CLK3-202ENST00000395066 RASA4O43374 803 aa21.84■■□□□ 1.09
CLK3-202ENST00000395066 ZBED4O75132 1171 aa21.84■■□□□ 1.09
CLK3-202ENST00000395066 BANF1O75531 89 aa21.84■■□□□ 1.09
CLK3-202ENST00000395066 NEBLO76041 1014 aa21.84■■□□□ 1.09
CLK3-202ENST00000395066 CXCL9Q07325 125 aa21.84■■□□□ 1.09
CLK3-202ENST00000395066 ZNF394Q53GI3 561 aa21.84■■□□□ 1.09
CLK3-202ENST00000395066 RBBP8NLQ8NC74 664 aaPredicted RBP21.84■■□□□ 1.09
CLK3-202ENST00000395066 ATP6V0A1Q93050 837 aa21.84■■□□□ 1.09
CLK3-202ENST00000395066 STK38LQ9Y2H1 464 aa21.84■■□□□ 1.09
CLK3-202ENST00000395066 PCNTO95613 3336 aa21.84■■□□□ 1.09
CLK3-202ENST00000395066 LRRIQ4A6NIV6 560 aa21.84■■□□□ 1.09
CLK3-202ENST00000395066 DGAT1O75907 488 aa21.84■■□□□ 1.09
CLK3-202ENST00000395066 KLRC2P26717 231 aa21.84■■□□□ 1.09
CLK3-202ENST00000395066 CCND2P30279 289 aa21.84■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms