RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 PDLIM1O00151 329 aa11.83□□□□□ -0.51
CUX1-204ENST00000393824 AFPP02771 609 aaKnown RBP11.83□□□□□ -0.51
CUX1-204ENST00000393824 PDHA1P08559 390 aa11.83□□□□□ -0.51
CUX1-204ENST00000393824 UCHL3P15374 230 aa11.83□□□□□ -0.51
CUX1-204ENST00000393824 PTGIRP43119 386 aa11.83□□□□□ -0.51
CUX1-204ENST00000393824 SLCO1A2P46721 670 aa11.83□□□□□ -0.51
CUX1-204ENST00000393824 SREBF2Q12772 1141 aa11.83□□□□□ -0.51
CUX1-204ENST00000393824 CTTNQ14247 550 aaKnown RBP11.83□□□□□ -0.51
CUX1-204ENST00000393824 GRB14Q14449 540 aa11.83□□□□□ -0.51
CUX1-204ENST00000393824 GJC2Q5T442 439 aaPredicted RBP11.83□□□□□ -0.51
CUX1-204ENST00000393824 TRMT1LQ7Z2T5 733 aaKnown RBP11.83□□□□□ -0.51
CUX1-204ENST00000393824 ECHDC2Q86YB7 292 aa11.83□□□□□ -0.51
CUX1-204ENST00000393824 RBM12BQ8IXT5 1001 aaKnown RBP11.83□□□□□ -0.51
CUX1-204ENST00000393824 RBBP8NLQ8NC74 664 aaPredicted RBP11.83□□□□□ -0.51
CUX1-204ENST00000393824 ARHGEF2Q92974 986 aaKnown RBP11.83□□□□□ -0.51
CUX1-204ENST00000393824 SERPINB12Q96P63 405 aa11.83□□□□□ -0.51
CUX1-204ENST00000393824 SH2D3AQ9BRG2 576 aa11.83□□□□□ -0.51
CUX1-204ENST00000393824 TRIM4Q9C037 500 aa11.83□□□□□ -0.51
CUX1-204ENST00000393824 CCDC113Q9H0I3 377 aa11.83□□□□□ -0.51
CUX1-204ENST00000393824 ERVK-5Q9HDB9 667 aa11.83□□□□□ -0.51
CUX1-204ENST00000393824 FLRT1Q9NZU1 646 aa11.83□□□□□ -0.51
CUX1-204ENST00000393824 TRAF3IP3Q9Y228 551 aa11.83□□□□□ -0.51
CUX1-204ENST00000393824 PCDHGA4Q9Y5G9 962 aa11.83□□□□□ -0.51
CUX1-204ENST00000393824 PCDHA3Q9Y5H8 950 aa11.83□□□□□ -0.51
CUX1-204ENST00000393824 KIAA1217Q5T5P2 1943 aa11.83□□□□□ -0.52
CUX1-204ENST00000393824 TMEM150BA6NC51 233 aa11.83□□□□□ -0.52
CUX1-204ENST00000393824 GM2AP17900 193 aa11.83□□□□□ -0.52
CUX1-204ENST00000393824 ATP5DP30049 168 aa11.83□□□□□ -0.52
CUX1-204ENST00000393824 PTDSS1P48651 473 aaKnown RBP11.83□□□□□ -0.52
CUX1-204ENST00000393824 CCNA1P78396 465 aa11.83□□□□□ -0.52
CUX1-204ENST00000393824 PPP2R5CQ13362 524 aa11.83□□□□□ -0.52
CUX1-204ENST00000393824 DYNC1I2Q13409 638 aaKnown RBP11.83□□□□□ -0.52
CUX1-204ENST00000393824 MTFR1Q15390 333 aa11.83□□□□□ -0.52
CUX1-204ENST00000393824 STXBP2Q15833 593 aa11.83□□□□□ -0.52
CUX1-204ENST00000393824 CCL14Q16627 93 aa11.83□□□□□ -0.52
CUX1-204ENST00000393824 CGB2Q6NT52 195 aa11.83□□□□□ -0.52
CUX1-204ENST00000393824 FAM13CQ8NE31 585 aa11.83□□□□□ -0.52
CUX1-204ENST00000393824 GTF3C2Q8WUA4 911 aaPredicted RBP11.83□□□□□ -0.52
CUX1-204ENST00000393824 SCFD1Q8WVM8 642 aa11.83□□□□□ -0.52
CUX1-204ENST00000393824 KIFAP3Q92845 792 aa11.83□□□□□ -0.52
CUX1-204ENST00000393824 DTNBP1Q96EV8 351 aa11.83□□□□□ -0.52
CUX1-204ENST00000393824 RBM41Q96IZ5 413 aaKnown RBP11.83□□□□□ -0.52
CUX1-204ENST00000393824 HSD17B14Q9BPX1 270 aa11.83□□□□□ -0.52
CUX1-204ENST00000393824 CTTNBP2NLQ9P2B4 639 aa11.83□□□□□ -0.52
CUX1-204ENST00000393824 PCYOX1Q9UHG3 505 aa11.83□□□□□ -0.52
CUX1-204ENST00000393824 KIAA1024Q9UPX6 916 aa11.83□□□□□ -0.52
CUX1-204ENST00000393824 MROH7Q68CQ1 1323 aa11.83□□□□□ -0.52
CUX1-204ENST00000393824 LRRC37A2A6NM11 1700 aa11.82□□□□□ -0.52
CUX1-204ENST00000393824 CA12O43570 354 aa11.82□□□□□ -0.52
CUX1-204ENST00000393824 SLITRK3O94933 977 aa11.82□□□□□ -0.52
CUX1-204ENST00000393824 HSPA6P17066 643 aa11.82□□□□□ -0.52
CUX1-204ENST00000393824 CHRNA3P32297 505 aa11.82□□□□□ -0.52
CUX1-204ENST00000393824 RPL21P46778 160 aaKnown RBP11.82□□□□□ -0.52
CUX1-204ENST00000393824 UGCGQ16739 394 aa11.82□□□□□ -0.52
CUX1-204ENST00000393824 LY6KQ17RY6 165 aa11.82□□□□□ -0.52
CUX1-204ENST00000393824 UBAP2Q5T6F2 1119 aaKnown RBP11.82□□□□□ -0.52
CUX1-204ENST00000393824 DNAAF5Q86Y56 855 aa11.82□□□□□ -0.52
CUX1-204ENST00000393824 SLC17A8Q8NDX2 589 aa11.82□□□□□ -0.52
CUX1-204ENST00000393824 ATL2Q8NHH9 583 aa11.82□□□□□ -0.52
CUX1-204ENST00000393824 FAM81AQ8TBF8 368 aa11.82□□□□□ -0.52
CUX1-204ENST00000393824 COPS5Q92905 334 aa11.82□□□□□ -0.52
CUX1-204ENST00000393824 MAGEB18Q96M61 343 aa11.82□□□□□ -0.52
CUX1-204ENST00000393824 NUDCD1Q96RS6 583 aa11.82□□□□□ -0.52
CUX1-204ENST00000393824 IWS1Q96ST2 819 aa11.82□□□□□ -0.52
CUX1-204ENST00000393824 EIF2AK1Q9BQI3 630 aaKnown RBP11.82□□□□□ -0.52
CUX1-204ENST00000393824 METTL14Q9HCE5 456 aaKnown RBP11.82□□□□□ -0.52
CUX1-204ENST00000393824 DLGAP2Q9P1A6 1054 aa11.82□□□□□ -0.52
CUX1-204ENST00000393824 PLXNB2O15031 1838 aa11.82□□□□□ -0.52
CUX1-204ENST00000393824 GTPBP10A4D1E9 387 aaKnown RBP11.82□□□□□ -0.52
CUX1-204ENST00000393824 SPATA31C2B4DYI2 1134 aa11.82□□□□□ -0.52
CUX1-204ENST00000393824 DDX3XO00571 662 aaKnown RBP eCLIP11.82□□□□□ -0.521e-8■■□□□ 13.3
CUX1-204ENST00000393824 ADCY6O43306 1168 aa11.82□□□□□ -0.52
CUX1-204ENST00000393824 TRPA1O75762 1119 aa11.82□□□□□ -0.52
CUX1-204ENST00000393824 SNAI1O95863 264 aaPredicted RBP11.82□□□□□ -0.52
CUX1-204ENST00000393824 LMNAP02545 664 aaKnown RBP11.82□□□□□ -0.52
CUX1-204ENST00000393824 YARSP54577 528 aaKnown RBP11.82□□□□□ -0.52
CUX1-204ENST00000393824 EXOC3L4Q17RC7 722 aa11.82□□□□□ -0.52
CUX1-204ENST00000393824 RNF220Q5VTB9 566 aa11.82□□□□□ -0.52
CUX1-204ENST00000393824 TRMT10CQ7L0Y3 403 aaKnown RBP11.82□□□□□ -0.52
CUX1-204ENST00000393824 ARMCX2Q7L311 632 aa11.82□□□□□ -0.52
CUX1-204ENST00000393824 NIPA1Q7RTP0 329 aa11.82□□□□□ -0.52
CUX1-204ENST00000393824 PLEKHH3Q7Z736 793 aa11.82□□□□□ -0.52
CUX1-204ENST00000393824 SESTD1Q86VW0 696 aa11.82□□□□□ -0.52
CUX1-204ENST00000393824 GPRASP2Q96D09 838 aa11.82□□□□□ -0.52
CUX1-204ENST00000393824 DYDC2Q96IM9 177 aa11.82□□□□□ -0.52
CUX1-204ENST00000393824 ZFYVE28Q9HCC9 887 aa11.82□□□□□ -0.52
CUX1-204ENST00000393824 ARMCX3Q9UH62 379 aaPredicted RBP11.82□□□□□ -0.52
CUX1-204ENST00000393824 ZNF232Q9UNY5 417 aa11.82□□□□□ -0.52
CUX1-204ENST00000393824 USP20Q9Y2K6 914 aa11.82□□□□□ -0.52
CUX1-204ENST00000393824 LRCH1Q9Y2L9 728 aa11.82□□□□□ -0.52
CUX1-204ENST00000393824 IVNS1ABPQ9Y6Y0 642 aa11.82□□□□□ -0.52
CUX1-204ENST00000393824 SIGLEC16A6NMB1 481 aa11.81□□□□□ -0.52
CUX1-204ENST00000393824 TRAFD1O14545 582 aaPredicted RBP11.81□□□□□ -0.52
CUX1-204ENST00000393824 SLC16A3O15427 465 aaKnown RBP11.81□□□□□ -0.52
CUX1-204ENST00000393824 PHF2O75151 1096 aa11.81□□□□□ -0.52
CUX1-204ENST00000393824 PLA2G4BP0C869 781 aa11.81□□□□□ -0.52
CUX1-204ENST00000393824 PYGBP11216 843 aa11.81□□□□□ -0.52
CUX1-204ENST00000393824 SLC9A1P19634 815 aa11.81□□□□□ -0.52
CUX1-204ENST00000393824 UBA1P22314 1058 aaKnown RBP11.81□□□□□ -0.52
CUX1-204ENST00000393824 FGFR4P22455 802 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms