RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 OR5B17Q8NGF7 314 aa10.95□□□□□ -0.66
COL6A3-205ENST00000392004 KIF9Q9HAQ2 790 aa10.95□□□□□ -0.66
COL6A3-205ENST00000392004 MYO5AQ9Y4I1 1855 aaKnown RBP10.95□□□□□ -0.66
COL6A3-205ENST00000392004 DPYSL4O14531 572 aa10.95□□□□□ -0.66
COL6A3-205ENST00000392004 DARSP14868 501 aaKnown RBP10.95□□□□□ -0.66
COL6A3-205ENST00000392004 IQCEQ6IPM2 695 aa10.95□□□□□ -0.66
COL6A3-205ENST00000392004 ELOA2Q8IYF1 753 aaPredicted RBP10.95□□□□□ -0.66
COL6A3-205ENST00000392004 RBBP8NLQ8NC74 664 aaPredicted RBP10.95□□□□□ -0.66
COL6A3-205ENST00000392004 RNF39Q9H2S5 420 aa10.95□□□□□ -0.66
COL6A3-205ENST00000392004 DDX60Q8IY21 1712 aaKnown RBP10.95□□□□□ -0.66
COL6A3-205ENST00000392004 TAF1LQ8IZX4 1826 aa10.95□□□□□ -0.66
COL6A3-205ENST00000392004 H0YHG0 523 aa10.95□□□□□ -0.66
COL6A3-205ENST00000392004 KCNK3O14649 394 aa10.95□□□□□ -0.66
COL6A3-205ENST00000392004 SGPL1O95470 568 aa10.95□□□□□ -0.66
COL6A3-205ENST00000392004 AMHP03971 560 aa10.95□□□□□ -0.66
COL6A3-205ENST00000392004 WEE1P30291 646 aa10.95□□□□□ -0.66
COL6A3-205ENST00000392004 ICAM3P32942 547 aa10.95□□□□□ -0.66
COL6A3-205ENST00000392004 MNAT1P51948 309 aa10.95□□□□□ -0.66
COL6A3-205ENST00000392004 FAM102AQ5T9C2 384 aaPredicted RBP10.95□□□□□ -0.66
COL6A3-205ENST00000392004 TADA2BQ86TJ2 420 aa10.95□□□□□ -0.66
COL6A3-205ENST00000392004 TAX1BP1Q86VP1 789 aa10.95□□□□□ -0.66
COL6A3-205ENST00000392004 TMEM192Q8IY95 271 aa10.95□□□□□ -0.66
COL6A3-205ENST00000392004 NHEJ1Q9H9Q4 299 aaPredicted RBP10.95□□□□□ -0.66
COL6A3-205ENST00000392004 SMPD4Q9NXE4 827 aa10.95□□□□□ -0.66
COL6A3-205ENST00000392004 GTF3C4Q9UKN8 822 aa10.95□□□□□ -0.66
COL6A3-205ENST00000392004 PCDHB12Q9Y5F1 795 aa10.95□□□□□ -0.66
COL6A3-205ENST00000392004 MAFBQ9Y5Q3 323 aaPredicted RBP10.95□□□□□ -0.66
COL6A3-205ENST00000392004 GTF3C5Q9Y5Q8 519 aaPredicted RBP10.95□□□□□ -0.66
COL6A3-205ENST00000392004 F5P12259 2224 aa10.95□□□□□ -0.66
COL6A3-205ENST00000392004 ANKRD36CQ5JPF3 1778 aa10.94□□□□□ -0.66
COL6A3-205ENST00000392004 URODP06132 367 aa10.94□□□□□ -0.66
COL6A3-205ENST00000392004 UCHL3P15374 230 aa10.94□□□□□ -0.66
COL6A3-205ENST00000392004 KLRC2P26717 231 aa10.94□□□□□ -0.66
COL6A3-205ENST00000392004 GTF2H1P32780 548 aa10.94□□□□□ -0.66
COL6A3-205ENST00000392004 FXR1P51114 621 aaKnown RBP eCLIP10.94□□□□□ -0.66
COL6A3-205ENST00000392004 PRMT2P55345 433 aa10.94□□□□□ -0.66
COL6A3-205ENST00000392004 SGSM1Q2NKQ1 1148 aa10.94□□□□□ -0.66
COL6A3-205ENST00000392004 TTI2Q6NXR4 508 aa10.94□□□□□ -0.66
COL6A3-205ENST00000392004 GCNAQ96QF7 691 aa10.94□□□□□ -0.66
COL6A3-205ENST00000392004 PLVAPQ9BX97 442 aa10.94□□□□□ -0.66
COL6A3-205ENST00000392004 GEMIN8Q9NWZ8 242 aaKnown RBP10.94□□□□□ -0.66
COL6A3-205ENST00000392004 A6NJR5 290 aa10.94□□□□□ -0.66
COL6A3-205ENST00000392004 GATMP50440 423 aa10.94□□□□□ -0.66
COL6A3-205ENST00000392004 SNX16P57768 344 aa10.94□□□□□ -0.66
COL6A3-205ENST00000392004 ZBED6P86452 979 aa10.94□□□□□ -0.66
COL6A3-205ENST00000392004 SGO2Q562F6 1265 aa10.94□□□□□ -0.66
COL6A3-205ENST00000392004 MMS22LQ6ZRQ5 1243 aa10.94□□□□□ -0.66
COL6A3-205ENST00000392004 FRMD5Q7Z6J6 570 aa10.94□□□□□ -0.66
COL6A3-205ENST00000392004 IFT81Q8WYA0 676 aa10.94□□□□□ -0.66
COL6A3-205ENST00000392004 HSPH1Q92598 858 aa10.94□□□□□ -0.66
COL6A3-205ENST00000392004 COLEC11Q9BWP8 271 aa10.94□□□□□ -0.66
COL6A3-205ENST00000392004 GOLPH3Q9H4A6 298 aa10.94□□□□□ -0.66
COL6A3-205ENST00000392004 SLC38A7Q9NVC3 462 aa10.94□□□□□ -0.66
COL6A3-205ENST00000392004 KLHL11Q9NVR0 708 aa10.94□□□□□ -0.66
COL6A3-205ENST00000392004 CEP350Q5VT06 3117 aa10.94□□□□□ -0.66
COL6A3-205ENST00000392004 UBE4BO95155 1302 aa10.94□□□□□ -0.66
COL6A3-205ENST00000392004 FOXN3O00409 490 aaPredicted RBP10.94□□□□□ -0.66
COL6A3-205ENST00000392004 B4GALT4O60513 344 aa10.94□□□□□ -0.66
COL6A3-205ENST00000392004 KIAA0754O94854 1291 aa10.94□□□□□ -0.66
COL6A3-205ENST00000392004 CD4P01730 458 aa10.94□□□□□ -0.66
COL6A3-205ENST00000392004 RPL17P18621 184 aaKnown RBP10.94□□□□□ -0.66
COL6A3-205ENST00000392004 CRYBB1P53674 252 aaPredicted RBP10.94□□□□□ -0.66
COL6A3-205ENST00000392004 CYP4A22Q5TCH4 519 aa10.94□□□□□ -0.66
COL6A3-205ENST00000392004 CCDC62Q6P9F0 684 aa10.94□□□□□ -0.66
COL6A3-205ENST00000392004 CCNYQ8ND76 341 aa10.94□□□□□ -0.66
COL6A3-205ENST00000392004 VIPAS39Q9H9C1 493 aa10.94□□□□□ -0.66
COL6A3-205ENST00000392004 PAPPAQ13219 1627 aa10.94□□□□□ -0.66
COL6A3-205ENST00000392004 MOXD2PA6NHM9 499 aa10.93□□□□□ -0.66
COL6A3-205ENST00000392004 EIF3DO15371 548 aaKnown RBP eCLIP10.93□□□□□ -0.66
COL6A3-205ENST00000392004 KIF11P52732 1056 aa10.93□□□□□ -0.66
COL6A3-205ENST00000392004 VEPH1Q14D04 833 aa10.93□□□□□ -0.66
COL6A3-205ENST00000392004 CLUL1Q15846 466 aa10.93□□□□□ -0.66
COL6A3-205ENST00000392004 DCAF4L1Q3SXM0 396 aa10.93□□□□□ -0.66
COL6A3-205ENST00000392004 FBXO47Q5MNV8 452 aa10.93□□□□□ -0.66
COL6A3-205ENST00000392004 GIPC2Q8TF65 315 aa10.93□□□□□ -0.66
COL6A3-205ENST00000392004 AUTS2Q8WXX7 1259 aa10.93□□□□□ -0.66
COL6A3-205ENST00000392004 PCYT2Q99447 389 aa10.93□□□□□ -0.66
COL6A3-205ENST00000392004 OLFML3Q9NRN5 406 aa10.93□□□□□ -0.66
COL6A3-205ENST00000392004 CNOT8Q9UFF9 292 aaKnown RBP10.93□□□□□ -0.66
COL6A3-205ENST00000392004 GTF2IRD1Q9UHL9 959 aa10.93□□□□□ -0.66
COL6A3-205ENST00000392004 AKAP11Q9UKA4 1901 aa10.93□□□□□ -0.66
COL6A3-205ENST00000392004 GOLGA6CA6NDK9 693 aa10.93□□□□□ -0.66
COL6A3-205ENST00000392004 LRRIQ3A6PVS8 624 aaPredicted RBP10.93□□□□□ -0.66
COL6A3-205ENST00000392004 M0R2N6 131 aa10.93□□□□□ -0.66
COL6A3-205ENST00000392004 FTLP02792 175 aaPredicted RBP10.93□□□□□ -0.66
COL6A3-205ENST00000392004 ADRB2P07550 413 aa10.93□□□□□ -0.66
COL6A3-205ENST00000392004 CLTBP09497 229 aa10.93□□□□□ -0.66
COL6A3-205ENST00000392004 OR4Q2P0C623 313 aa10.93□□□□□ -0.66
COL6A3-205ENST00000392004 GOLGA6DP0CG33 693 aa10.93□□□□□ -0.66
COL6A3-205ENST00000392004 CYP24A1Q07973 514 aa10.93□□□□□ -0.66
COL6A3-205ENST00000392004 EDRF1Q3B7T1 1238 aa10.93□□□□□ -0.66
COL6A3-205ENST00000392004 CCDC88AQ3V6T2 1871 aa10.93□□□□□ -0.66
COL6A3-205ENST00000392004 MORN1Q5T089 497 aa10.93□□□□□ -0.66
COL6A3-205ENST00000392004 SND1Q7KZF4 910 aaKnown RBP eCLIP10.93□□□□□ -0.66
COL6A3-205ENST00000392004 HOOK3Q86VS8 718 aa10.93□□□□□ -0.66
COL6A3-205ENST00000392004 NOA1Q8NC60 698 aaKnown RBP10.93□□□□□ -0.66
COL6A3-205ENST00000392004 TMEM35BQ8NCS4 154 aa10.93□□□□□ -0.66
COL6A3-205ENST00000392004 NCAPGQ9BPX3 1015 aa10.93□□□□□ -0.66
COL6A3-205ENST00000392004 TSPYL2Q9H2G4 693 aaPredicted RBP10.93□□□□□ -0.66
COL6A3-205ENST00000392004 GOLGA6AQ9NYA3 693 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms