RNA–Protein interactions for RNA: ENST00000375340.10

SMC1A-202, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 1 (best) BASIC

Gene SMC1A, Length 9,930 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-202ENST00000375340 TNFRSF8P28908 595 aa6.89□□□□□ -1.31
SMC1A-202ENST00000375340 PTENP60484 403 aa6.89□□□□□ -1.31
SMC1A-202ENST00000375340 QPCTQ16769 361 aa6.89□□□□□ -1.31
SMC1A-202ENST00000375340 GPAT2Q6NUI2 795 aa6.89□□□□□ -1.31
SMC1A-202ENST00000375340 AGGF1Q8N302 714 aaeCLIP6.89□□□□□ -1.313e-8■■□□□ 13.3
SMC1A-202ENST00000375340 PRPF38AQ8NAV1 312 aaKnown RBP6.89□□□□□ -1.31
SMC1A-202ENST00000375340 ABCF3Q9NUQ8 709 aa6.89□□□□□ -1.31
SMC1A-202ENST00000375340 NYAP2Q9P242 653 aa6.89□□□□□ -1.31
SMC1A-202ENST00000375340 STOML1Q9UBI4 398 aa6.89□□□□□ -1.31
SMC1A-202ENST00000375340 SULT1E1P49888 294 aa6.89□□□□□ -1.31
SMC1A-202ENST00000375340 CENPCQ03188 943 aa6.89□□□□□ -1.31
SMC1A-202ENST00000375340 KCNT1Q5JUK3 1230 aa6.89□□□□□ -1.31
SMC1A-202ENST00000375340 NT5DC3Q86UY8 548 aa6.89□□□□□ -1.31
SMC1A-202ENST00000375340 ACER1Q8TDN7 264 aa6.89□□□□□ -1.31
SMC1A-202ENST00000375340 CDHR1Q96JP9 859 aa6.89□□□□□ -1.31
SMC1A-202ENST00000375340 SPATA33Q96N06 139 aa6.89□□□□□ -1.31
SMC1A-202ENST00000375340 SERPINB12Q96P63 405 aa6.89□□□□□ -1.31
SMC1A-202ENST00000375340 SLC26A4O43511 780 aa6.89□□□□□ -1.31
SMC1A-202ENST00000375340 KRT38O76015 456 aa6.89□□□□□ -1.31
SMC1A-202ENST00000375340 ASNSP08243 561 aa6.89□□□□□ -1.31
SMC1A-202ENST00000375340 SLURP2P0DP57 97 aa6.89□□□□□ -1.31
SMC1A-202ENST00000375340 HMGCS2P54868 508 aa6.89□□□□□ -1.31
SMC1A-202ENST00000375340 RCN1Q15293 331 aa6.89□□□□□ -1.31
SMC1A-202ENST00000375340 LRP10Q7Z4F1 713 aa6.89□□□□□ -1.31
SMC1A-202ENST00000375340 MTDHQ86UE4 582 aaKnown RBP6.89□□□□□ -1.31
SMC1A-202ENST00000375340 ZFPM1Q8IX07 1006 aa6.89□□□□□ -1.31
SMC1A-202ENST00000375340 LNX1Q8TBB1 728 aaPredicted RBP6.89□□□□□ -1.31
SMC1A-202ENST00000375340 TNFRSF25Q93038 417 aa6.89□□□□□ -1.31
SMC1A-202ENST00000375340 MTMR9Q96QG7 549 aa6.89□□□□□ -1.31
SMC1A-202ENST00000375340 RIOX1Q9H6W3 641 aa6.89□□□□□ -1.31
SMC1A-202ENST00000375340 C10orf88Q9H8K7 445 aa6.89□□□□□ -1.31
SMC1A-202ENST00000375340 WHRNQ9P202 907 aa6.89□□□□□ -1.31
SMC1A-202ENST00000375340 ZC3H7BQ9UGR2 993 aaKnown RBP6.89□□□□□ -1.31
SMC1A-202ENST00000375340 EXTL3O43909 919 aa6.88□□□□□ -1.31
SMC1A-202ENST00000375340 ABCD1P33897 745 aa6.88□□□□□ -1.31
SMC1A-202ENST00000375340 SHMT1P34896 483 aa6.88□□□□□ -1.31
SMC1A-202ENST00000375340 SHROOM1Q2M3G4 852 aaPredicted RBP6.88□□□□□ -1.31
SMC1A-202ENST00000375340 LRRC23Q53EV4 343 aaPredicted RBP6.88□□□□□ -1.31
SMC1A-202ENST00000375340 TTC39BQ5VTQ0 682 aaPredicted RBP6.88□□□□□ -1.31
SMC1A-202ENST00000375340 TRIM72Q6ZMU5 477 aa6.88□□□□□ -1.31
SMC1A-202ENST00000375340 CCNYL1Q8N7R7 359 aa6.88□□□□□ -1.31
SMC1A-202ENST00000375340 ICA1LQ8NDH6 482 aa6.88□□□□□ -1.31
SMC1A-202ENST00000375340 NSUN6Q8TEA1 469 aaKnown RBP6.88□□□□□ -1.31
SMC1A-202ENST00000375340 DNAJC9Q8WXX5 260 aa6.88□□□□□ -1.31
SMC1A-202ENST00000375340 GRAMD1AQ96CP6 724 aa6.88□□□□□ -1.31
SMC1A-202ENST00000375340 FAM111AQ96PZ2 611 aa6.88□□□□□ -1.31
SMC1A-202ENST00000375340 IKZF4Q9H2S9 585 aa6.88□□□□□ -1.31
SMC1A-202ENST00000375340 ACP6Q9NPH0 428 aa6.88□□□□□ -1.31
SMC1A-202ENST00000375340 FBXO28Q9NVF7 368 aa6.88□□□□□ -1.31
SMC1A-202ENST00000375340 ADA2Q9NZK5 511 aa6.88□□□□□ -1.31
SMC1A-202ENST00000375340 DDX3XO00571 662 aaKnown RBP eCLIP6.88□□□□□ -1.319e-54■■■■■ 35.8
SMC1A-202ENST00000375340 GSTA4O15217 222 aa6.88□□□□□ -1.31
SMC1A-202ENST00000375340 GPC4O75487 556 aa6.88□□□□□ -1.31
SMC1A-202ENST00000375340 PRKCBP05771 671 aa6.88□□□□□ -1.31
SMC1A-202ENST00000375340 KRT7P08729 469 aa6.88□□□□□ -1.31
SMC1A-202ENST00000375340 TKFCQ3LXA3 575 aa6.88□□□□□ -1.31
SMC1A-202ENST00000375340 RNF149Q8NC42 400 aa6.88□□□□□ -1.31
SMC1A-202ENST00000375340 ZKSCAN4Q969J2 545 aaPredicted RBP6.88□□□□□ -1.31
SMC1A-202ENST00000375340 ROPN1BQ9BZX4 212 aaPredicted RBP6.88□□□□□ -1.31
SMC1A-202ENST00000375340 ROPN1Q9HAT0 212 aaPredicted RBP6.88□□□□□ -1.31
SMC1A-202ENST00000375340 KIAA1586Q9HCI6 787 aa6.88□□□□□ -1.31
SMC1A-202ENST00000375340 ZNF70Q9UC06 446 aaPredicted RBP6.88□□□□□ -1.31
SMC1A-202ENST00000375340 PCDHA10Q9Y5I2 948 aa6.88□□□□□ -1.31
SMC1A-202ENST00000375340 FOXO6A8MYZ6 492 aa6.88□□□□□ -1.31
SMC1A-202ENST00000375340 SOX11P35716 441 aa6.88□□□□□ -1.31
SMC1A-202ENST00000375340 SESN2P58004 480 aaPredicted RBP6.88□□□□□ -1.31
SMC1A-202ENST00000375340 MAPK6Q16659 721 aa6.88□□□□□ -1.31
SMC1A-202ENST00000375340 CLEC16AQ2KHT3 1053 aa6.88□□□□□ -1.31
SMC1A-202ENST00000375340 TEX2Q8IWB9 1127 aa6.88□□□□□ -1.31
SMC1A-202ENST00000375340 THTPAQ9BU02 230 aa6.88□□□□□ -1.31
SMC1A-202ENST00000375340 AFF2P51816 1311 aa6.88□□□□□ -1.31
SMC1A-202ENST00000375340 A0A0A6YYK5 440 aaPredicted RBP6.88□□□□□ -1.31
SMC1A-202ENST00000375340 ZWINTO95229 277 aa6.88□□□□□ -1.31
SMC1A-202ENST00000375340 APRTP07741 180 aa6.88□□□□□ -1.31
SMC1A-202ENST00000375340 KRT3P12035 628 aa6.88□□□□□ -1.31
SMC1A-202ENST00000375340 ETS1P14921 441 aa6.88□□□□□ -1.31
SMC1A-202ENST00000375340 SMARCA1P28370 1054 aa6.88□□□□□ -1.31
SMC1A-202ENST00000375340 AVPR1AP37288 418 aa6.88□□□□□ -1.31
SMC1A-202ENST00000375340 STX1BP61266 288 aa6.88□□□□□ -1.31
SMC1A-202ENST00000375340 ZNF200P98182 395 aaPredicted RBP6.88□□□□□ -1.31
SMC1A-202ENST00000375340 TTC13Q8NBP0 860 aa6.88□□□□□ -1.31
SMC1A-202ENST00000375340 FLAD1Q8NFF5 587 aa6.88□□□□□ -1.31
SMC1A-202ENST00000375340 TATDN2Q93075 761 aa6.88□□□□□ -1.31
SMC1A-202ENST00000375340 MOV10L1Q9BXT6 1211 aaKnown RBP6.88□□□□□ -1.31
SMC1A-202ENST00000375340 SUDS3Q9H7L9 328 aaPredicted RBP6.88□□□□□ -1.31
SMC1A-202ENST00000375340 AIPL1Q9NZN9 384 aa6.88□□□□□ -1.31
SMC1A-202ENST00000375340 SMG5Q9UPR3 1016 aaKnown RBP6.88□□□□□ -1.31
SMC1A-202ENST00000375340 ASTN1O14525 1302 aa6.88□□□□□ -1.31
SMC1A-202ENST00000375340 MARCKSL1P49006 195 aa6.88□□□□□ -1.31
SMC1A-202ENST00000375340 NFX1Q12986 1120 aaKnown RBP6.88□□□□□ -1.31
SMC1A-202ENST00000375340 HEATR6Q6AI08 1181 aaKnown RBP6.88□□□□□ -1.31
SMC1A-202ENST00000375340 CIAPIN1Q6FI81 312 aa6.88□□□□□ -1.31
SMC1A-202ENST00000375340 C11orf63Q6NUN7 778 aa6.88□□□□□ -1.31
SMC1A-202ENST00000375340 C4orf32Q8N8J7 132 aa6.88□□□□□ -1.31
SMC1A-202ENST00000375340 BAP1Q92560 729 aa6.88□□□□□ -1.31
SMC1A-202ENST00000375340 SERPINI1Q99574 410 aa6.88□□□□□ -1.31
SMC1A-202ENST00000375340 TMEM121Q9BTD3 319 aa6.88□□□□□ -1.31
SMC1A-202ENST00000375340 FAM49BQ9NUQ9 324 aa6.88□□□□□ -1.31
SMC1A-202ENST00000375340 DDTLA6NHG4 134 aaPredicted RBP6.88□□□□□ -1.31
SMC1A-202ENST00000375340 EML1O00423 815 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms