RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 USP20Q9Y2K6 914 aa16.63■□□□□ 0.25
CCDC40-202ENST00000374876 SMIM35A0A1B0GVV1 85 aa16.62■□□□□ 0.25
CCDC40-202ENST00000374876 PITPNM1O00562 1244 aa16.62■□□□□ 0.25
CCDC40-202ENST00000374876 FGGP02679 453 aa16.62■□□□□ 0.25
CCDC40-202ENST00000374876 SELPP16109 830 aa16.62■□□□□ 0.25
CCDC40-202ENST00000374876 DRP2Q13474 957 aa16.62■□□□□ 0.25
CCDC40-202ENST00000374876 USP37Q86T82 979 aa16.62■□□□□ 0.25
CCDC40-202ENST00000374876 MCPH1Q8NEM0 835 aa16.62■□□□□ 0.25
CCDC40-202ENST00000374876 CCDC26Q8TAB7 109 aa16.62■□□□□ 0.25
CCDC40-202ENST00000374876 BSNDQ8WZ55 320 aa16.62■□□□□ 0.25
CCDC40-202ENST00000374876 POMGNT1Q8WZA1 660 aa16.62■□□□□ 0.25
CCDC40-202ENST00000374876 NTPCRQ9BSD7 190 aaKnown RBP16.62■□□□□ 0.25
CCDC40-202ENST00000374876 OSBPL7Q9BZF2 842 aa16.62■□□□□ 0.25
CCDC40-202ENST00000374876 TMEM8AQ9HCN3 771 aa16.62■□□□□ 0.25
CCDC40-202ENST00000374876 CTTNBP2NLQ9P2B4 639 aa16.62■□□□□ 0.25
CCDC40-202ENST00000374876 TTC7AQ9ULT0 858 aaPredicted RBP16.62■□□□□ 0.25
CCDC40-202ENST00000374876 COG5Q9UP83 839 aa16.62■□□□□ 0.25
CCDC40-202ENST00000374876 MAGEB2O15479 319 aa16.62■□□□□ 0.25
CCDC40-202ENST00000374876 DDX3YO15523 660 aaKnown RBP16.62■□□□□ 0.25
CCDC40-202ENST00000374876 DGAT1O75907 488 aa16.62■□□□□ 0.25
CCDC40-202ENST00000374876 IVLP07476 585 aa16.62■□□□□ 0.25
CCDC40-202ENST00000374876 ITGA4P13612 1032 aa16.62■□□□□ 0.25
CCDC40-202ENST00000374876 HADHBP55084 474 aaKnown RBP16.62■□□□□ 0.25
CCDC40-202ENST00000374876 MCCD1P59942 119 aaPredicted RBP16.62■□□□□ 0.25
CCDC40-202ENST00000374876 GPC5P78333 572 aa16.62■□□□□ 0.25
CCDC40-202ENST00000374876 MKRN4PQ13434 485 aaPredicted RBP16.62■□□□□ 0.25
CCDC40-202ENST00000374876 PRPF4BQ13523 1007 aaKnown RBP16.62■□□□□ 0.25
CCDC40-202ENST00000374876 TRAF7Q6Q0C0 670 aa16.62■□□□□ 0.25
CCDC40-202ENST00000374876 LRRC8DQ7L1W4 858 aa16.62■□□□□ 0.25
CCDC40-202ENST00000374876 MAATS1Q7Z4T9 603 aa16.62■□□□□ 0.25
CCDC40-202ENST00000374876 DEFB128Q7Z7B8 93 aa16.62■□□□□ 0.25
CCDC40-202ENST00000374876 FAM71AQ8IYT1 594 aa16.62■□□□□ 0.25
CCDC40-202ENST00000374876 TMEM199Q8N511 208 aa16.62■□□□□ 0.25
CCDC40-202ENST00000374876 PARD3BQ8TEW8 1205 aa16.62■□□□□ 0.25
CCDC40-202ENST00000374876 NAP1L3Q99457 506 aaPredicted RBP16.62■□□□□ 0.25
CCDC40-202ENST00000374876 CARD9Q9H257 536 aa16.62■□□□□ 0.25
CCDC40-202ENST00000374876 HNRNPDLO14979 420 aaKnown RBP16.61■□□□□ 0.25
CCDC40-202ENST00000374876 RTN2O75298 545 aa16.61■□□□□ 0.25
CCDC40-202ENST00000374876 MAFO75444 373 aaPredicted RBP16.61■□□□□ 0.25
CCDC40-202ENST00000374876 RPS6KA5O75582 802 aa16.61■□□□□ 0.25
CCDC40-202ENST00000374876 CHRNA1P02708 482 aa16.61■□□□□ 0.25
CCDC40-202ENST00000374876 VTNP04004 478 aa16.61■□□□□ 0.25
CCDC40-202ENST00000374876 ACRP10323 421 aa16.61■□□□□ 0.25
CCDC40-202ENST00000374876 GPNMBQ14956 572 aa16.61■□□□□ 0.25
CCDC40-202ENST00000374876 IQCKQ8N0W5 287 aa16.61■□□□□ 0.25
CCDC40-202ENST00000374876 EPS8L1Q8TE68 723 aa16.61■□□□□ 0.25
CCDC40-202ENST00000374876 SEMA4DQ92854 862 aa16.61■□□□□ 0.25
CCDC40-202ENST00000374876 ZNF668Q96K58 619 aaPredicted RBP16.61■□□□□ 0.25
CCDC40-202ENST00000374876 POP1Q99575 1024 aaKnown RBP16.61■□□□□ 0.25
CCDC40-202ENST00000374876 AMACRQ9UHK6 382 aa16.61■□□□□ 0.25
CCDC40-202ENST00000374876 GINS2Q9Y248 185 aa16.61■□□□□ 0.25
CCDC40-202ENST00000374876 SCN5AQ14524 2016 aa16.61■□□□□ 0.25
CCDC40-202ENST00000374876 CYP26A1O43174 497 aa16.6■□□□□ 0.25
CCDC40-202ENST00000374876 POLGP54098 1239 aaPredicted RBP16.6■□□□□ 0.25
CCDC40-202ENST00000374876 FPGSQ05932 587 aa16.6■□□□□ 0.25
CCDC40-202ENST00000374876 MBTPS1Q14703 1052 aa16.6■□□□□ 0.25
CCDC40-202ENST00000374876 CLUL1Q15846 466 aa16.6■□□□□ 0.25
CCDC40-202ENST00000374876 RSPH3Q86UC2 560 aa16.6■□□□□ 0.25
CCDC40-202ENST00000374876 LINC01465Q8N7H1 131 aa16.6■□□□□ 0.25
CCDC40-202ENST00000374876 TMC2Q8TDI7 906 aa16.6■□□□□ 0.25
CCDC40-202ENST00000374876 BICD1Q96G01 975 aa16.6■□□□□ 0.25
CCDC40-202ENST00000374876 IFT74Q96LB3 600 aa16.6■□□□□ 0.25
CCDC40-202ENST00000374876 RNPC3Q96LT9 517 aaKnown RBP16.6■□□□□ 0.25
CCDC40-202ENST00000374876 MFSD14AQ96MC6 490 aa16.6■□□□□ 0.25
CCDC40-202ENST00000374876 KREMEN1Q96MU8 473 aa16.6■□□□□ 0.25
CCDC40-202ENST00000374876 CDHR5Q9HBB8 845 aa16.6■□□□□ 0.25
CCDC40-202ENST00000374876 ATP6V0A4Q9HBG4 840 aa16.6■□□□□ 0.25
CCDC40-202ENST00000374876 NOCTQ9UK39 431 aaKnown RBP16.6■□□□□ 0.25
CCDC40-202ENST00000374876 AKT3Q9Y243 479 aa16.6■□□□□ 0.25
CCDC40-202ENST00000374876 LTBP2Q14767 1821 aa16.6■□□□□ 0.25
CCDC40-202ENST00000374876 RANBP2P49792 3224 aaKnown RBP16.6■□□□□ 0.25
CCDC40-202ENST00000374876 IGKV6-21A0A0C4DH24 114 aa16.6■□□□□ 0.25
CCDC40-202ENST00000374876 GTF2H1P32780 548 aa16.6■□□□□ 0.25
CCDC40-202ENST00000374876 GPC3P51654 580 aa16.6■□□□□ 0.25
CCDC40-202ENST00000374876 DCAF12L1Q5VU92 463 aa16.6■□□□□ 0.25
CCDC40-202ENST00000374876 C11orf63Q6NUN7 778 aa16.6■□□□□ 0.25
CCDC40-202ENST00000374876 SLC39A4Q6P5W5 647 aa16.6■□□□□ 0.25
CCDC40-202ENST00000374876 C16orf59Q7L2K0 433 aa16.6■□□□□ 0.25
CCDC40-202ENST00000374876 NOP9Q86U38 636 aaKnown RBP16.6■□□□□ 0.25
CCDC40-202ENST00000374876 FBXL13Q8NEE6 735 aa16.6■□□□□ 0.25
CCDC40-202ENST00000374876 SLC7A3Q8WY07 619 aa16.6■□□□□ 0.25
CCDC40-202ENST00000374876 SHC3Q92529 594 aa16.6■□□□□ 0.25
CCDC40-202ENST00000374876 TMEM143Q96AN5 459 aa16.6■□□□□ 0.25
CCDC40-202ENST00000374876 VWCEQ96DN2 955 aa16.6■□□□□ 0.25
CCDC40-202ENST00000374876 FBXL18Q96ME1 805 aa16.6■□□□□ 0.25
CCDC40-202ENST00000374876 NT5C1BQ96P26 610 aa16.6■□□□□ 0.25
CCDC40-202ENST00000374876 GDF15Q99988 308 aa16.6■□□□□ 0.25
CCDC40-202ENST00000374876 DHX33Q9H6R0 707 aaKnown RBP16.6■□□□□ 0.25
CCDC40-202ENST00000374876 COQ4Q9Y3A0 265 aa16.6■□□□□ 0.25
CCDC40-202ENST00000374876 ALG6Q9Y672 507 aa16.6■□□□□ 0.25
CCDC40-202ENST00000374876 CDY2AQ9Y6F7 541 aa16.6■□□□□ 0.25
CCDC40-202ENST00000374876 GOLGA6L10A0A0M3HER8 536 aa16.59■□□□□ 0.25
CCDC40-202ENST00000374876 NBNO60934 754 aa16.59■□□□□ 0.25
CCDC40-202ENST00000374876 KRT14P02533 472 aa16.59■□□□□ 0.25
CCDC40-202ENST00000374876 DLATP10515 647 aaKnown RBP16.59■□□□□ 0.25
CCDC40-202ENST00000374876 GZMAP12544 262 aa16.59■□□□□ 0.25
CCDC40-202ENST00000374876 CHRNB2P17787 502 aa16.59■□□□□ 0.25
CCDC40-202ENST00000374876 TMOD1P28289 359 aa16.59■□□□□ 0.25
CCDC40-202ENST00000374876 HSPA9P38646 679 aaKnown RBP16.59■□□□□ 0.25
CCDC40-202ENST00000374876 CYP24A1Q07973 514 aa16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms