RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 TRIM42Q8IWZ5 723 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 KIRREL3Q8IZU9 778 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 ARL14Q8N4G2 192 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 HORMAD2Q8N7B1 307 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 DTX3Q8N9I9 347 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 PXYLP1Q8TE99 480 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 P3H4Q92791 437 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 OSGEPL1Q9H4B0 414 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 CATSPERBQ9H7T0 1116 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 NHEJ1Q9H9Q4 299 aaPredicted RBP4.32□□□□□ -1.72
USH2A-202ENST00000366942 KLHL11Q9NVR0 708 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 POLKQ9UBT6 870 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 FTSJ1Q9UET6 329 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 CNTNAP2Q9UHC6 1331 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 DNAJC12Q9UKB3 198 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 SUPT6HQ7KZ85 1726 aaKnown RBP4.32□□□□□ -1.72
USH2A-202ENST00000366942 ABCC3O15438 1527 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 UMODL1Q5DID0 1318 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 GOLGA8IPA6NC78 632 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 NEDD8-MDP1E9PL57 170 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 RASGRF2O14827 1237 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 ARHGEF9O43307 516 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 URI1O94763 535 aaPredicted RBP4.32□□□□□ -1.72
USH2A-202ENST00000366942 MX2P20592 715 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 TGM2P21980 687 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 FSHRP23945 695 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 DSG3P32926 999 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 LHX1P48742 406 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 CREB5Q02930 508 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 ILF2Q12905 390 aaKnown RBP4.32□□□□□ -1.72
USH2A-202ENST00000366942 XRCC4Q13426 336 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 PRAMEF19Q5SWL8 479 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 LAYNQ6UX15 382 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 POTEDQ86YR6 584 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 ZFPM1Q8IX07 1006 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 GPRASP2Q96D09 838 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 EPSTI1Q96J88 318 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 KCNN2Q9H2S1 579 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 RABEP2Q9H5N1 569 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 RSAD1Q9HA92 442 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 CHMP2BQ9UQN3 213 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 TNKSO95271 1327 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 PPP1R3GB7ZBB8 358 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 POLR3GO15318 223 aaPredicted RBP4.31□□□□□ -1.72
USH2A-202ENST00000366942 ORC4O43929 436 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 GPR37L1O60883 481 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 WFS1O76024 890 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 KLHL18O94889 574 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 ZSCAN22P10073 491 aaPredicted RBP4.31□□□□□ -1.72
USH2A-202ENST00000366942 NDUFV2P19404 249 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 TBXAS1P24557 533 aaPredicted RBP4.31□□□□□ -1.72
USH2A-202ENST00000366942 SYKP43405 635 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 CXCL12P48061 93 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 MASP1P48740 699 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 RNASE9P60153 205 aaKnown RBP4.31□□□□□ -1.72
USH2A-202ENST00000366942 FKBP1AP62942 108 aaKnown RBP4.31□□□□□ -1.72
USH2A-202ENST00000366942 E2F1Q01094 437 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 BAATQ14032 418 aaPredicted RBP4.31□□□□□ -1.72
USH2A-202ENST00000366942 TRIM14Q14142 442 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 GNA13Q14344 377 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 NKX1-1Q15270 411 aaPredicted RBP4.31□□□□□ -1.72
USH2A-202ENST00000366942 SF3B3Q15393 1217 aaKnown RBP4.31□□□□□ -1.72
USH2A-202ENST00000366942 FSCBQ5H9T9 825 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 SLC9A4Q6AI14 798 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 LRRC8DQ7L1W4 858 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 DSELQ8IZU8 1212 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 GRIN3AQ8TCU5 1115 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 ZNF296Q8WUU4 475 aaPredicted RBP4.31□□□□□ -1.72
USH2A-202ENST00000366942 FEM1CQ96JP0 617 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 PHPT1Q9NRX4 125 aaPredicted RBP4.31□□□□□ -1.72
USH2A-202ENST00000366942 NDFIP2Q9NV92 336 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 DNAJC17Q9NVM6 304 aaKnown RBP4.31□□□□□ -1.72
USH2A-202ENST00000366942 CDK12Q9NYV4 1490 aaPredicted RBP4.31□□□□□ -1.72
USH2A-202ENST00000366942 TMEM110-MUSTN1A8MSY1 372 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 DFNA5O60443 496 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 GPC4O75487 556 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 USP2O75604 605 aaPredicted RBP4.31□□□□□ -1.72
USH2A-202ENST00000366942 PRKCBP05771 671 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 SRGNP10124 158 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 GHRP10912 638 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 GYS1P13807 737 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 EPB42P16452 691 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 FGFR3P22607 806 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 PIK3R1P27986 724 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 STX2P32856 288 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 MARSP56192 900 aaKnown RBP4.31□□□□□ -1.72
USH2A-202ENST00000366942 OSTNP61366 133 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 PTPN12Q05209 780 aaKnown RBP4.31□□□□□ -1.72
USH2A-202ENST00000366942 TFDP2Q14188 446 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 CATSPEREQ5SY80 951 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 SUSD4Q5VX71 490 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 HHIPL1Q96JK4 782 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 CORO1BQ9BR76 489 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 APOL5Q9BWW9 433 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 STX18Q9P2W9 335 aaKnown RBP4.31□□□□□ -1.72
USH2A-202ENST00000366942 C19orf25Q9UFG5 118 aaPredicted RBP4.31□□□□□ -1.72
USH2A-202ENST00000366942 BTBD17A6NE02 478 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 H3BRB1 525 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 H3BRJ5 948 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 ZNF217O75362 1048 aa4.31□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms