RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 FGD4Q96M96 766 aa22.14■■□□□ 1.14
CCDC88B-203ENST00000359902 HEMGNQ9BXL5 484 aa22.14■■□□□ 1.14
CCDC88B-203ENST00000359902 MTMR12Q9C0I1 747 aa22.14■■□□□ 1.14
CCDC88B-203ENST00000359902 ELP3Q9H9T3 547 aa22.14■■□□□ 1.14
CCDC88B-203ENST00000359902 SCINQ9Y6U3 715 aa22.14■■□□□ 1.14
CCDC88B-203ENST00000359902 ABLIM1O14639 778 aa22.14■■□□□ 1.13
CCDC88B-203ENST00000359902 TLR3O15455 904 aaKnown RBP22.14■■□□□ 1.13
CCDC88B-203ENST00000359902 LGR5O75473 907 aa22.14■■□□□ 1.13
CCDC88B-203ENST00000359902 GJB6O95452 261 aa22.14■■□□□ 1.13
CCDC88B-203ENST00000359902 ITIH2P19823 946 aa22.14■■□□□ 1.13
CCDC88B-203ENST00000359902 MAN1A1P33908 653 aa22.14■■□□□ 1.13
CCDC88B-203ENST00000359902 MYL6P60660 151 aa22.14■■□□□ 1.13
CCDC88B-203ENST00000359902 MXD4Q14582 209 aaPredicted RBP22.14■■□□□ 1.13
CCDC88B-203ENST00000359902 ZNF568Q3ZCX4 644 aa22.14■■□□□ 1.13
CCDC88B-203ENST00000359902 SYDE1Q6ZW31 735 aaPredicted RBP22.14■■□□□ 1.13
CCDC88B-203ENST00000359902 LRRC71Q8N4P6 559 aa22.14■■□□□ 1.13
CCDC88B-203ENST00000359902 UHMK1Q8TAS1 419 aaKnown RBP22.14■■□□□ 1.13
CCDC88B-203ENST00000359902 TCP11Q8WWU5 503 aa22.14■■□□□ 1.13
CCDC88B-203ENST00000359902 OTUD5Q96G74 571 aa22.14■■□□□ 1.13
CCDC88B-203ENST00000359902 AAASQ9NRG9 546 aa22.14■■□□□ 1.13
CCDC88B-203ENST00000359902 PARVAQ9NVD7 372 aa22.14■■□□□ 1.13
CCDC88B-203ENST00000359902 IGKV6-21A0A0C4DH24 114 aa22.13■■□□□ 1.13
CCDC88B-203ENST00000359902 OGTO15294 1046 aa22.13■■□□□ 1.13
CCDC88B-203ENST00000359902 DDNO94850 711 aaPredicted RBP22.13■■□□□ 1.13
CCDC88B-203ENST00000359902 PRKCBP05771 671 aa22.13■■□□□ 1.13
CCDC88B-203ENST00000359902 MMP8P22894 467 aa22.13■■□□□ 1.13
CCDC88B-203ENST00000359902 MCL1Q07820 350 aa22.13■■□□□ 1.13
CCDC88B-203ENST00000359902 PTK6Q13882 451 aa22.13■■□□□ 1.13
CCDC88B-203ENST00000359902 CELF3Q5SZQ8 465 aaKnown RBP22.13■■□□□ 1.13
CCDC88B-203ENST00000359902 C6orf118Q5T5N4 469 aa22.13■■□□□ 1.13
CCDC88B-203ENST00000359902 RHBDF2Q6PJF5 856 aa22.13■■□□□ 1.13
CCDC88B-203ENST00000359902 CCDC50Q8IVM0 306 aa22.13■■□□□ 1.13
CCDC88B-203ENST00000359902 KATNAL2Q8IYT4 538 aa22.13■■□□□ 1.13
CCDC88B-203ENST00000359902 FEZF2Q8TBJ5 459 aa22.13■■□□□ 1.13
CCDC88B-203ENST00000359902 RAPGEF5Q92565 580 aa22.13■■□□□ 1.13
CCDC88B-203ENST00000359902 FAM212AQ96EL1 285 aa22.13■■□□□ 1.13
CCDC88B-203ENST00000359902 CNOT10Q9H9A5 744 aaKnown RBP22.13■■□□□ 1.13
CCDC88B-203ENST00000359902 ASIC3Q9UHC3 531 aa22.13■■□□□ 1.13
CCDC88B-203ENST00000359902 CPSF3Q9UKF6 684 aaKnown RBP22.13■■□□□ 1.13
CCDC88B-203ENST00000359902 PAPPA2Q9BXP8 1791 aa22.13■■□□□ 1.13
CCDC88B-203ENST00000359902 ADCY2Q08462 1091 aa22.13■■□□□ 1.13
CCDC88B-203ENST00000359902 MAPK6Q16659 721 aa22.13■■□□□ 1.13
CCDC88B-203ENST00000359902 CCDC25Q86WR0 208 aa22.13■■□□□ 1.13
CCDC88B-203ENST00000359902 SPATS2Q86XZ4 545 aaKnown RBP22.13■■□□□ 1.13
CCDC88B-203ENST00000359902 ATL2Q8NHH9 583 aa22.13■■□□□ 1.13
CCDC88B-203ENST00000359902 DCPSQ96C86 337 aaKnown RBP22.13■■□□□ 1.13
CCDC88B-203ENST00000359902 USTQ9Y2C2 406 aa22.13■■□□□ 1.13
CCDC88B-203ENST00000359902 LRRC37A2A6NM11 1700 aa22.13■■□□□ 1.13
CCDC88B-203ENST00000359902 OTOFQ9HC10 1997 aa22.12■■□□□ 1.13
CCDC88B-203ENST00000359902 GAS2O43903 313 aaKnown RBP22.12■■□□□ 1.13
CCDC88B-203ENST00000359902 DUOXA2Q1HG44 320 aa22.12■■□□□ 1.13
CCDC88B-203ENST00000359902 CCDC125Q86Z20 511 aa22.12■■□□□ 1.13
CCDC88B-203ENST00000359902 SULF1Q8IWU6 871 aa22.12■■□□□ 1.13
CCDC88B-203ENST00000359902 MDM1Q8TC05 714 aa22.12■■□□□ 1.13
CCDC88B-203ENST00000359902 GRK7Q8WTQ7 553 aa22.12■■□□□ 1.13
CCDC88B-203ENST00000359902 CLMNQ96JQ2 1002 aa22.12■■□□□ 1.13
CCDC88B-203ENST00000359902 TXNRD2Q9NNW7 524 aa22.12■■□□□ 1.13
CCDC88B-203ENST00000359902 SMIM23A6NLE4 172 aa22.12■■□□□ 1.13
CCDC88B-203ENST00000359902 RGS16O15492 202 aaPredicted RBP22.12■■□□□ 1.13
CCDC88B-203ENST00000359902 RPL7AP62424 266 aaKnown RBP22.12■■□□□ 1.13
CCDC88B-203ENST00000359902 IFI35P80217 286 aaPredicted RBP22.12■■□□□ 1.13
CCDC88B-203ENST00000359902 TRMT10CQ7L0Y3 403 aaKnown RBP22.12■■□□□ 1.13
CCDC88B-203ENST00000359902 PLPPR4Q7Z2D5 763 aa22.12■■□□□ 1.13
CCDC88B-203ENST00000359902 ANKS1BQ7Z6G8 1248 aa22.12■■□□□ 1.13
CCDC88B-203ENST00000359902 CROCCP2Q86T23 111 aa22.12■■□□□ 1.13
CCDC88B-203ENST00000359902 ZBTB8OSQ8IWT0 167 aa22.12■■□□□ 1.13
CCDC88B-203ENST00000359902 SNF8Q96H20 258 aa22.12■■□□□ 1.13
CCDC88B-203ENST00000359902 OSBPL8Q9BZF1 889 aa22.12■■□□□ 1.13
CCDC88B-203ENST00000359902 HOMER3Q9NSC5 361 aa22.12■■□□□ 1.13
CCDC88B-203ENST00000359902 A0A087WUV0 522 aaPredicted RBP22.11■■□□□ 1.13
CCDC88B-203ENST00000359902 NOP56O00567 594 aaKnown RBP22.11■■□□□ 1.13
CCDC88B-203ENST00000359902 SLC25A27O95847 323 aa22.11■■□□□ 1.13
CCDC88B-203ENST00000359902 GAS8O95995 478 aa22.11■■□□□ 1.13
CCDC88B-203ENST00000359902 CD58P19256 250 aa22.11■■□□□ 1.13
CCDC88B-203ENST00000359902 NF2P35240 595 aa22.11■■□□□ 1.13
CCDC88B-203ENST00000359902 IREB2P48200 963 aaKnown RBP22.11■■□□□ 1.13
CCDC88B-203ENST00000359902 SLC20A2Q08357 652 aa22.11■■□□□ 1.13
CCDC88B-203ENST00000359902 PLCB4Q15147 1175 aa22.11■■□□□ 1.13
CCDC88B-203ENST00000359902 TRIP13Q15645 432 aaPredicted RBP22.11■■□□□ 1.13
CCDC88B-203ENST00000359902 CCNG2Q16589 344 aa22.11■■□□□ 1.13
CCDC88B-203ENST00000359902 SGSM1Q2NKQ1 1148 aa22.11■■□□□ 1.13
CCDC88B-203ENST00000359902 KCNV1Q6PIU1 500 aa22.11■■□□□ 1.13
CCDC88B-203ENST00000359902 EXD1Q8NHP7 514 aa22.11■■□□□ 1.13
CCDC88B-203ENST00000359902 EPS8L3Q8TE67 593 aaKnown RBP22.11■■□□□ 1.13
CCDC88B-203ENST00000359902 ADARB2Q9NS39 739 aaKnown RBP22.11■■□□□ 1.13
CCDC88B-203ENST00000359902 CISHQ9NSE2 258 aa22.11■■□□□ 1.13
CCDC88B-203ENST00000359902 NEU2Q9Y3R4 380 aa22.11■■□□□ 1.13
CCDC88B-203ENST00000359902 Q3C1V9 767 aa22.11■■□□□ 1.13
CCDC88B-203ENST00000359902 EXOC8Q8IYI6 725 aa22.11■■□□□ 1.13
CCDC88B-203ENST00000359902 C3orf20Q8ND61 904 aa22.11■■□□□ 1.13
CCDC88B-203ENST00000359902 NIF3L1Q9GZT8 377 aa22.11■■□□□ 1.13
CCDC88B-203ENST00000359902 RBPJLQ9UBG7 517 aa22.11■■□□□ 1.13
CCDC88B-203ENST00000359902 IP6K2Q9UHH9 426 aa22.11■■□□□ 1.13
CCDC88B-203ENST00000359902 DICER1Q9UPY3 1922 aaKnown RBP22.11■■□□□ 1.13
CCDC88B-203ENST00000359902 TMEM191CA6NGB0 347 aa22.1■■□□□ 1.13
CCDC88B-203ENST00000359902 TMEM191BP0C7N4 346 aa22.1■■□□□ 1.13
CCDC88B-203ENST00000359902 SSR1P43307 286 aaKnown RBP22.1■■□□□ 1.13
CCDC88B-203ENST00000359902 MMP13P45452 471 aa22.1■■□□□ 1.13
CCDC88B-203ENST00000359902 SURF1Q15526 300 aa22.1■■□□□ 1.13
CCDC88B-203ENST00000359902 ERO1BQ86YB8 467 aa22.1■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms