RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 ESRRBO95718 433 aa20.49■□□□□ 0.87
CCDC88B-202ENST00000356786 TOB1P50616 345 aaPredicted RBP20.49■□□□□ 0.87
CCDC88B-202ENST00000356786 KCNA1Q09470 495 aa20.49■□□□□ 0.87
CCDC88B-202ENST00000356786 OR9Q1Q8NGQ5 310 aa20.49■□□□□ 0.87
CCDC88B-202ENST00000356786 ACTRT1Q8TDG2 376 aa20.49■□□□□ 0.87
CCDC88B-202ENST00000356786 MAGEB5Q9BZ81 275 aa20.49■□□□□ 0.87
CCDC88B-202ENST00000356786 C15orf41Q9Y2V0 281 aa20.49■□□□□ 0.87
CCDC88B-202ENST00000356786 GTPBP10A4D1E9 387 aaKnown RBP20.48■□□□□ 0.87
CCDC88B-202ENST00000356786 DGKIO75912 1065 aa20.48■□□□□ 0.87
CCDC88B-202ENST00000356786 CENPCQ03188 943 aa20.48■□□□□ 0.87
CCDC88B-202ENST00000356786 DUOXA2Q1HG44 320 aa20.48■□□□□ 0.87
CCDC88B-202ENST00000356786 EAPPQ56P03 285 aaPredicted RBP20.48■□□□□ 0.87
CCDC88B-202ENST00000356786 ITPRIPL1Q6GPH6 555 aa20.48■□□□□ 0.87
CCDC88B-202ENST00000356786 FUKQ8N0W3 1084 aa20.48■□□□□ 0.87
CCDC88B-202ENST00000356786 NUP93Q8N1F7 819 aa20.48■□□□□ 0.87
CCDC88B-202ENST00000356786 MCEEQ96PE7 176 aa20.48■□□□□ 0.87
CCDC88B-202ENST00000356786 CCDC85BQ15834 202 aaPredicted RBP20.48■□□□□ 0.87
CCDC88B-202ENST00000356786 IMPG1Q17R60 797 aa20.48■□□□□ 0.87
CCDC88B-202ENST00000356786 INPP5DQ92835 1189 aa20.48■□□□□ 0.87
CCDC88B-202ENST00000356786 GRID1Q9ULK0 1009 aa20.48■□□□□ 0.87
CCDC88B-202ENST00000356786 RPS6KA4O75676 772 aa20.48■□□□□ 0.87
CCDC88B-202ENST00000356786 ASNSP08243 561 aa20.48■□□□□ 0.87
CCDC88B-202ENST00000356786 CLEC4FQ8N1N0 589 aa20.48■□□□□ 0.87
CCDC88B-202ENST00000356786 NSUN4Q96CB9 384 aaKnown RBP20.48■□□□□ 0.87
CCDC88B-202ENST00000356786 CNBD2Q96M20 576 aa20.48■□□□□ 0.87
CCDC88B-202ENST00000356786 POLR3FQ9H1D9 316 aaPredicted RBP20.48■□□□□ 0.87
CCDC88B-202ENST00000356786 CD163L1Q9NR16 1453 aa20.48■□□□□ 0.87
CCDC88B-202ENST00000356786 CEP170BQ9Y4F5 1589 aaPredicted RBP20.48■□□□□ 0.87
CCDC88B-202ENST00000356786 RSPH10B2B2RC85 870 aa20.48■□□□□ 0.87
CCDC88B-202ENST00000356786 TRIM49D1C9J1S8 452 aa20.48■□□□□ 0.87
CCDC88B-202ENST00000356786 CST8O60676 142 aa20.48■□□□□ 0.87
CCDC88B-202ENST00000356786 RSPH10BP0C881 870 aa20.48■□□□□ 0.87
CCDC88B-202ENST00000356786 RNF217Q8TC41 542 aa20.48■□□□□ 0.87
CCDC88B-202ENST00000356786 PSPC1Q8WXF1 523 aaKnown RBP20.48■□□□□ 0.87
CCDC88B-202ENST00000356786 ATG4AQ8WYN0 398 aa20.48■□□□□ 0.87
CCDC88B-202ENST00000356786 AGAP3Q96P47 875 aa20.48■□□□□ 0.87
CCDC88B-202ENST00000356786 CDC42EP4Q9H3Q1 356 aaKnown RBP20.48■□□□□ 0.87
CCDC88B-202ENST00000356786 TYW5A2RUC4 315 aaKnown RBP20.47■□□□□ 0.87
CCDC88B-202ENST00000356786 XPAP23025 273 aaPredicted RBP20.47■□□□□ 0.87
CCDC88B-202ENST00000356786 HADHAP40939 763 aa20.47■□□□□ 0.87
CCDC88B-202ENST00000356786 CNPY4Q8N129 248 aa20.47■□□□□ 0.87
CCDC88B-202ENST00000356786 MTMR8Q96EF0 704 aa20.47■□□□□ 0.87
CCDC88B-202ENST00000356786 CLMNQ96JQ2 1002 aa20.47■□□□□ 0.87
CCDC88B-202ENST00000356786 RXFP1Q9HBX9 757 aa20.47■□□□□ 0.87
CCDC88B-202ENST00000356786 EPC2Q52LR7 807 aa20.47■□□□□ 0.87
CCDC88B-202ENST00000356786 FAM217BQ9NTX9 383 aaPredicted RBP20.47■□□□□ 0.87
CCDC88B-202ENST00000356786 PCDHB2Q9Y5E7 798 aa20.47■□□□□ 0.87
CCDC88B-202ENST00000356786 CEMIPQ8WUJ3 1361 aa20.47■□□□□ 0.87
CCDC88B-202ENST00000356786 F8VZ95 297 aa20.47■□□□□ 0.87
CCDC88B-202ENST00000356786 MTRQ99707 1265 aa20.47■□□□□ 0.87
CCDC88B-202ENST00000356786 SEMA4AQ9H3S1 761 aa20.47■□□□□ 0.87
CCDC88B-202ENST00000356786 RUBCNLQ9H714 662 aa20.47■□□□□ 0.87
CCDC88B-202ENST00000356786 BLOC1S6Q9UL45 172 aa20.47■□□□□ 0.87
CCDC88B-202ENST00000356786 FSBPO95073 299 aa20.46■□□□□ 0.87
CCDC88B-202ENST00000356786 FAM153BP0C7A2 387 aa20.46■□□□□ 0.87
CCDC88B-202ENST00000356786 PSMD7P51665 324 aa20.46■□□□□ 0.87
CCDC88B-202ENST00000356786 SNRNP35Q16560 246 aaKnown RBP20.46■□□□□ 0.87
CCDC88B-202ENST00000356786 FAM153CQ494X1 144 aa20.46■□□□□ 0.87
CCDC88B-202ENST00000356786 EFHC2Q5JST6 749 aa20.46■□□□□ 0.87
CCDC88B-202ENST00000356786 ARHGAP27Q6ZUM4 889 aa20.46■□□□□ 0.87
CCDC88B-202ENST00000356786 MTDHQ86UE4 582 aaKnown RBP20.46■□□□□ 0.87
CCDC88B-202ENST00000356786 SPATA18Q8TC71 538 aa20.46■□□□□ 0.87
CCDC88B-202ENST00000356786 MYO3BQ8WXR4 1341 aa20.46■□□□□ 0.87
CCDC88B-202ENST00000356786 NMD3Q96D46 503 aaKnown RBP20.46■□□□□ 0.87
CCDC88B-202ENST00000356786 MKNK1Q9BUB5 465 aa20.46■□□□□ 0.87
CCDC88B-202ENST00000356786 FAM153AQ9UHL3 310 aa20.46■□□□□ 0.87
CCDC88B-202ENST00000356786 ATP11BQ9Y2G3 1177 aa20.46■□□□□ 0.87
CCDC88B-202ENST00000356786 M0R3G1 203 aa20.46■□□□□ 0.87
CCDC88B-202ENST00000356786 MROH9Q5TGP6 573 aa20.46■□□□□ 0.87
CCDC88B-202ENST00000356786 CATSPER4Q7RTX7 472 aa20.46■□□□□ 0.87
CCDC88B-202ENST00000356786 PRPF18Q99633 342 aaKnown RBP20.46■□□□□ 0.87
CCDC88B-202ENST00000356786 BEGAINQ9BUH8 593 aa20.46■□□□□ 0.87
CCDC88B-202ENST00000356786 RAVER2Q9HCJ3 691 aaKnown RBP20.46■□□□□ 0.87
CCDC88B-202ENST00000356786 GTF3C4Q9UKN8 822 aa20.46■□□□□ 0.87
CCDC88B-202ENST00000356786 SATB2Q9UPW6 733 aa20.46■□□□□ 0.87
CCDC88B-202ENST00000356786 KCNQ2O43526 872 aa20.46■□□□□ 0.87
CCDC88B-202ENST00000356786 RAD17O75943 681 aa20.46■□□□□ 0.87
CCDC88B-202ENST00000356786 PDGFRAP16234 1089 aa20.46■□□□□ 0.87
CCDC88B-202ENST00000356786 KCNA2P16389 499 aa20.46■□□□□ 0.87
CCDC88B-202ENST00000356786 CACNA2D1P54289 1103 aa20.46■□□□□ 0.87
CCDC88B-202ENST00000356786 LRRC8BQ6P9F7 803 aa20.46■□□□□ 0.87
CCDC88B-202ENST00000356786 SARS2Q9NP81 518 aaKnown RBP20.46■□□□□ 0.87
CCDC88B-202ENST00000356786 E2F8A0AVK6 867 aa20.46■□□□□ 0.87
CCDC88B-202ENST00000356786 RPS6P62753 249 aaKnown RBP20.46■□□□□ 0.87
CCDC88B-202ENST00000356786 PIGHQ14442 188 aaPredicted RBP20.46■□□□□ 0.87
CCDC88B-202ENST00000356786 DSTYKQ6XUX3 929 aa20.46■□□□□ 0.87
CCDC88B-202ENST00000356786 ZNF668Q96K58 619 aaPredicted RBP20.46■□□□□ 0.87
CCDC88B-202ENST00000356786 EML4Q9HC35 981 aaKnown RBP20.46■□□□□ 0.87
CCDC88B-202ENST00000356786 SLC13A4Q9UKG4 626 aa20.46■□□□□ 0.87
CCDC88B-202ENST00000356786 KRT75O95678 551 aa20.45■□□□□ 0.86
CCDC88B-202ENST00000356786 PPARGP37231 505 aaPredicted RBP20.45■□□□□ 0.86
CCDC88B-202ENST00000356786 SCUBE1Q8IWY4 988 aa20.45■□□□□ 0.86
CCDC88B-202ENST00000356786 CDY2AQ9Y6F7 541 aa20.45■□□□□ 0.86
CCDC88B-202ENST00000356786 CDY1Q9Y6F8 540 aa20.45■□□□□ 0.86
CCDC88B-202ENST00000356786 ATP9AO75110 1047 aa20.45■□□□□ 0.86
CCDC88B-202ENST00000356786 SOX11P35716 441 aa20.45■□□□□ 0.86
CCDC88B-202ENST00000356786 BAG6P46379 1132 aa20.45■□□□□ 0.86
CCDC88B-202ENST00000356786 WDR72Q3MJ13 1102 aa20.45■□□□□ 0.86
CCDC88B-202ENST00000356786 COBLL1Q53SF7 1204 aa20.45■□□□□ 0.86
CCDC88B-202ENST00000356786 ACBD5Q5T8D3 534 aaPredicted RBP20.45■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms