RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 LEO1Q8WVC0 666 aaPredicted RBP19.92■□□□□ 0.78
CLN3-202ENST00000355477 RSAD2Q8WXG1 361 aa19.92■□□□□ 0.78
CLN3-202ENST00000355477 PCIF1Q9H4Z3 704 aa19.92■□□□□ 0.78
CLN3-202ENST00000355477 DPP3Q9NY33 737 aa19.92■□□□□ 0.78
CLN3-202ENST00000355477 EPS15L1Q9UBC2 864 aa19.92■□□□□ 0.78
CLN3-202ENST00000355477 KCNH3Q9ULD8 1083 aa19.92■□□□□ 0.78
CLN3-202ENST00000355477 HCN4Q9Y3Q4 1203 aa19.92■□□□□ 0.78
CLN3-202ENST00000355477 C2CD2Q9Y426 696 aa19.92■□□□□ 0.78
CLN3-202ENST00000355477 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP19.91■□□□□ 0.78
CLN3-202ENST00000355477 XYLBO75191 536 aa19.91■□□□□ 0.78
CLN3-202ENST00000355477 LAMP2P13473 410 aa19.91■□□□□ 0.78
CLN3-202ENST00000355477 ATF2P15336 505 aa19.91■□□□□ 0.78
CLN3-202ENST00000355477 FSHRP23945 695 aa19.91■□□□□ 0.78
CLN3-202ENST00000355477 AFMP43652 599 aa19.91■□□□□ 0.78
CLN3-202ENST00000355477 YWHAHQ04917 246 aaPredicted RBP19.91■□□□□ 0.78
CLN3-202ENST00000355477 ZNF280DQ6N043 979 aa19.91■□□□□ 0.78
CLN3-202ENST00000355477 RTL10Q7L3V2 364 aa19.91■□□□□ 0.78
CLN3-202ENST00000355477 EPM2AIP1Q7L775 607 aaPredicted RBP19.91■□□□□ 0.78
CLN3-202ENST00000355477 GRAMD1CQ8IYS0 662 aa19.91■□□□□ 0.78
CLN3-202ENST00000355477 MFSD14AQ96MC6 490 aa19.91■□□□□ 0.78
CLN3-202ENST00000355477 TMEM206Q9H813 350 aa19.91■□□□□ 0.78
CLN3-202ENST00000355477 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP19.91■□□□□ 0.78
CLN3-202ENST00000355477 DNMT3BQ9UBC3 853 aaKnown RBP19.91■□□□□ 0.78
CLN3-202ENST00000355477 ARHGEF37A1IGU5 675 aa19.9■□□□□ 0.78
CLN3-202ENST00000355477 IL18RAPO95256 599 aa19.9■□□□□ 0.78
CLN3-202ENST00000355477 PDGFBP01127 241 aaPredicted RBP19.9■□□□□ 0.78
CLN3-202ENST00000355477 POU2F2P09086 479 aa19.9■□□□□ 0.78
CLN3-202ENST00000355477 EHHADHQ08426 723 aa19.9■□□□□ 0.78
CLN3-202ENST00000355477 ADCY1Q08828 1119 aa19.9■□□□□ 0.78
CLN3-202ENST00000355477 CUL4BQ13620 913 aa19.9■□□□□ 0.78
CLN3-202ENST00000355477 UNC13DQ70J99 1090 aa19.9■□□□□ 0.78
CLN3-202ENST00000355477 TCEAL8Q8IYN2 117 aa19.9■□□□□ 0.78
CLN3-202ENST00000355477 ST13P5Q8NFI4 369 aaPredicted RBP19.9■□□□□ 0.78
CLN3-202ENST00000355477 ITFG1Q8TB96 612 aa19.9■□□□□ 0.78
CLN3-202ENST00000355477 ZNF507Q8TCN5 953 aa19.9■□□□□ 0.78
CLN3-202ENST00000355477 SENP8Q96LD8 212 aa19.9■□□□□ 0.78
CLN3-202ENST00000355477 MAGEF1Q9HAY2 307 aa19.9■□□□□ 0.78
CLN3-202ENST00000355477 CYP4F11Q9HBI6 524 aa19.9■□□□□ 0.78
CLN3-202ENST00000355477 SERTAD1Q9UHV2 236 aa19.9■□□□□ 0.78
CLN3-202ENST00000355477 A0A1B0GVL5 298 aa19.89■□□□□ 0.77
CLN3-202ENST00000355477 TULP1O00294 542 aaPredicted RBP19.89■□□□□ 0.77
CLN3-202ENST00000355477 PRRG1O14668 218 aa19.89■□□□□ 0.77
CLN3-202ENST00000355477 EXTL3O43909 919 aa19.89■□□□□ 0.77
CLN3-202ENST00000355477 VNN2O95498 520 aa19.89■□□□□ 0.77
CLN3-202ENST00000355477 LDHAP00338 332 aaKnown RBP19.89■□□□□ 0.77
CLN3-202ENST00000355477 OR4Q2P0C623 313 aa19.89■□□□□ 0.77
CLN3-202ENST00000355477 ELF1P32519 619 aa19.89■□□□□ 0.77
CLN3-202ENST00000355477 TDGQ13569 410 aa19.89■□□□□ 0.77
CLN3-202ENST00000355477 FAM26FQ5R3K3 315 aa19.89■□□□□ 0.77
CLN3-202ENST00000355477 TPGS2Q68CL5 300 aa19.89■□□□□ 0.77
CLN3-202ENST00000355477 SCARA3Q6AZY7 606 aa19.89■□□□□ 0.77
CLN3-202ENST00000355477 RNF19BQ6ZMZ0 732 aa19.89■□□□□ 0.77
CLN3-202ENST00000355477 BRSK2Q8IWQ3 736 aa19.89■□□□□ 0.77
CLN3-202ENST00000355477 NOC3LQ8WTT2 800 aaKnown RBP19.89■□□□□ 0.77
CLN3-202ENST00000355477 FAM84AQ96KN4 292 aa19.89■□□□□ 0.77
CLN3-202ENST00000355477 SPATA32Q96LK8 384 aa19.89■□□□□ 0.77
CLN3-202ENST00000355477 IGSF9Q9P2J2 1179 aa19.89■□□□□ 0.77
CLN3-202ENST00000355477 EIF3DO15371 548 aaKnown RBP eCLIP19.88■□□□□ 0.77
CLN3-202ENST00000355477 ACTN4O43707 911 aaKnown RBP19.88■□□□□ 0.77
CLN3-202ENST00000355477 SLFN14P0C7P3 912 aa19.88■□□□□ 0.77
CLN3-202ENST00000355477 TYMPP19971 482 aa19.88■□□□□ 0.77
CLN3-202ENST00000355477 CMA1P23946 247 aa19.88■□□□□ 0.77
CLN3-202ENST00000355477 KRT85P78386 507 aa19.88■□□□□ 0.77
CLN3-202ENST00000355477 OVOS1Q6IE37 1185 aa19.88■□□□□ 0.77
CLN3-202ENST00000355477 ARMCX5Q6P1M9 558 aa19.88■□□□□ 0.77
CLN3-202ENST00000355477 STXBP4Q6ZWJ1 553 aa19.88■□□□□ 0.77
CLN3-202ENST00000355477 USP37Q86T82 979 aa19.88■□□□□ 0.77
CLN3-202ENST00000355477 FBXL6Q8N531 539 aa19.88■□□□□ 0.77
CLN3-202ENST00000355477 RBAKQ9NYW8 714 aaPredicted RBP19.88■□□□□ 0.77
CLN3-202ENST00000355477 AFF4Q9UHB7 1163 aaKnown RBP19.88■□□□□ 0.77
CLN3-202ENST00000355477 ANHXE9PGG2 379 aa19.87■□□□□ 0.77
CLN3-202ENST00000355477 TGFB1I1O43294 461 aa19.87■□□□□ 0.77
CLN3-202ENST00000355477 NARSO43776 548 aaKnown RBP19.87■□□□□ 0.77
CLN3-202ENST00000355477 CPB1P15086 417 aa19.87■□□□□ 0.77
CLN3-202ENST00000355477 PFKFB1P16118 471 aa19.87■□□□□ 0.77
CLN3-202ENST00000355477 TFAMQ00059 246 aaKnown RBP19.87■□□□□ 0.77
CLN3-202ENST00000355477 PABPC1LQ4VXU2 614 aaKnown RBP19.87■□□□□ 0.77
CLN3-202ENST00000355477 NT5DC4Q86YG4 428 aa19.87■□□□□ 0.77
CLN3-202ENST00000355477 CEP57L1Q8IYX8 460 aa19.87■□□□□ 0.77
CLN3-202ENST00000355477 GPD1LQ8N335 351 aa19.87■□□□□ 0.77
CLN3-202ENST00000355477 SLC44A3Q8N4M1 653 aa19.87■□□□□ 0.77
CLN3-202ENST00000355477 SCFD1Q8WVM8 642 aa19.87■□□□□ 0.77
CLN3-202ENST00000355477 FGF13Q92913 245 aa19.87■□□□□ 0.77
CLN3-202ENST00000355477 BORCS6Q96GS4 357 aa19.87■□□□□ 0.77
CLN3-202ENST00000355477 PAGE5Q96GU1 130 aa19.87■□□□□ 0.77
CLN3-202ENST00000355477 TMEM209Q96SK2 561 aa19.87■□□□□ 0.77
CLN3-202ENST00000355477 PDE11AQ9HCR9 933 aa19.87■□□□□ 0.77
CLN3-202ENST00000355477 CDH7Q9ULB5 785 aa19.87■□□□□ 0.77
CLN3-202ENST00000355477 ARIH1Q9Y4X5 557 aaPredicted RBP19.87■□□□□ 0.77
CLN3-202ENST00000355477 INSL5Q9Y5Q6 135 aa19.87■□□□□ 0.77
CLN3-202ENST00000355477 PVALEFA0A1B0GWK0 134 aa19.86■□□□□ 0.77
CLN3-202ENST00000355477 LRG1P02750 347 aa19.86■□□□□ 0.77
CLN3-202ENST00000355477 CYP11A1P05108 521 aa19.86■□□□□ 0.77
CLN3-202ENST00000355477 RHOP08100 348 aa19.86■□□□□ 0.77
CLN3-202ENST00000355477 ODC1P11926 461 aa19.86■□□□□ 0.77
CLN3-202ENST00000355477 PAX3P23760 479 aa19.86■□□□□ 0.77
CLN3-202ENST00000355477 TAF6P49848 677 aa19.86■□□□□ 0.77
CLN3-202ENST00000355477 HTR4Q13639 388 aa19.86■□□□□ 0.77
CLN3-202ENST00000355477 SLC5A9Q2M3M2 681 aa19.86■□□□□ 0.77
CLN3-202ENST00000355477 POTEHQ6S545 545 aa19.86■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms