RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 KDM7AQ6ZMT4 941 aa10.78□□□□□ -0.68
SYNE1-203ENST00000354674 DDX42Q86XP3 938 aaKnown RBP eCLIP10.78□□□□□ -0.68
SYNE1-203ENST00000354674 IFNLR1Q8IU57 520 aaPredicted RBP10.78□□□□□ -0.68
SYNE1-203ENST00000354674 LRRC71Q8N4P6 559 aa10.78□□□□□ -0.68
SYNE1-203ENST00000354674 ABHD10Q9NUJ1 306 aa10.78□□□□□ -0.68
SYNE1-203ENST00000354674 SUCLA2Q9P2R7 463 aaPredicted RBP10.78□□□□□ -0.68
SYNE1-203ENST00000354674 NRCAMQ92823 1304 aa10.78□□□□□ -0.68
SYNE1-203ENST00000354674 PCNTO95613 3336 aa10.77□□□□□ -0.68
SYNE1-203ENST00000354674 MYADML2A6NDP7 307 aa10.77□□□□□ -0.68
SYNE1-203ENST00000354674 PFDN1O60925 122 aa10.77□□□□□ -0.68
SYNE1-203ENST00000354674 CST5P28325 142 aaPredicted RBP10.77□□□□□ -0.68
SYNE1-203ENST00000354674 CCND3P30281 292 aaPredicted RBP10.77□□□□□ -0.68
SYNE1-203ENST00000354674 MTIF2P46199 727 aaKnown RBP10.77□□□□□ -0.68
SYNE1-203ENST00000354674 PSEN2P49810 448 aa10.77□□□□□ -0.68
SYNE1-203ENST00000354674 DNM2P50570 870 aa10.77□□□□□ -0.68
SYNE1-203ENST00000354674 BEX3Q00994 111 aa10.77□□□□□ -0.68
SYNE1-203ENST00000354674 KIAA0753Q2KHM9 967 aa10.77□□□□□ -0.68
SYNE1-203ENST00000354674 CCSAPQ6IQ19 270 aaPredicted RBP10.77□□□□□ -0.68
SYNE1-203ENST00000354674 TAX1BP1Q86VP1 789 aa10.77□□□□□ -0.68
SYNE1-203ENST00000354674 KLHDC9Q8NEP7 349 aa10.77□□□□□ -0.68
SYNE1-203ENST00000354674 UHMK1Q8TAS1 419 aaKnown RBP10.77□□□□□ -0.68
SYNE1-203ENST00000354674 PCMTD1Q96MG8 357 aaPredicted RBP10.77□□□□□ -0.68
SYNE1-203ENST00000354674 NOC4LQ9BVI4 516 aaKnown RBP10.77□□□□□ -0.68
SYNE1-203ENST00000354674 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP10.77□□□□□ -0.68
SYNE1-203ENST00000354674 ANKRD63C9JTQ0 380 aa10.77□□□□□ -0.69
SYNE1-203ENST00000354674 SMIM10L2AP0DMW4 78 aa10.77□□□□□ -0.69
SYNE1-203ENST00000354674 SMIM10L2BP0DMW5 78 aa10.77□□□□□ -0.69
SYNE1-203ENST00000354674 HSPA6P17066 643 aa10.77□□□□□ -0.69
SYNE1-203ENST00000354674 CASP4P49662 377 aa10.77□□□□□ -0.69
SYNE1-203ENST00000354674 EFNA5P52803 228 aa10.77□□□□□ -0.69
SYNE1-203ENST00000354674 KLHL7Q8IXQ5 586 aa10.77□□□□□ -0.69
SYNE1-203ENST00000354674 SPATA4Q8NEY3 305 aa10.77□□□□□ -0.69
SYNE1-203ENST00000354674 DEPTORQ8TB45 409 aa10.77□□□□□ -0.69
SYNE1-203ENST00000354674 NAF1Q96HR8 494 aaKnown RBP10.77□□□□□ -0.69
SYNE1-203ENST00000354674 ATP6V1G3Q96LB4 118 aa10.77□□□□□ -0.69
SYNE1-203ENST00000354674 ERGIC2Q96RQ1 377 aa10.77□□□□□ -0.69
SYNE1-203ENST00000354674 DDX50Q9BQ39 737 aaKnown RBP10.77□□□□□ -0.69
SYNE1-203ENST00000354674 KATNAL1Q9BW62 490 aa10.77□□□□□ -0.69
SYNE1-203ENST00000354674 NDST4Q9H3R1 872 aa10.77□□□□□ -0.69
SYNE1-203ENST00000354674 METTL14Q9HCE5 456 aaKnown RBP10.77□□□□□ -0.69
SYNE1-203ENST00000354674 RBM12Q9NTZ6 932 aaKnown RBP10.77□□□□□ -0.69
SYNE1-203ENST00000354674 ABCF3Q9NUQ8 709 aa10.77□□□□□ -0.69
SYNE1-203ENST00000354674 TLDC2A0PJX2 215 aa10.77□□□□□ -0.69
SYNE1-203ENST00000354674 SMAPO00193 183 aa10.77□□□□□ -0.69
SYNE1-203ENST00000354674 RARBP10826 455 aa10.77□□□□□ -0.69
SYNE1-203ENST00000354674 PSMC2P35998 433 aaKnown RBP10.77□□□□□ -0.69
SYNE1-203ENST00000354674 CLCN3P51790 818 aa10.77□□□□□ -0.69
SYNE1-203ENST00000354674 IFFO1Q0D2I5 559 aa10.77□□□□□ -0.69
SYNE1-203ENST00000354674 UCMAQ8WVF2 138 aa10.77□□□□□ -0.69
SYNE1-203ENST00000354674 FBXL18Q96ME1 805 aa10.77□□□□□ -0.69
SYNE1-203ENST00000354674 SELENOSQ9BQE4 189 aa10.77□□□□□ -0.69
SYNE1-203ENST00000354674 LRRIQ4A6NIV6 560 aa10.76□□□□□ -0.69
SYNE1-203ENST00000354674 TISP43B9A030 160 aa10.76□□□□□ -0.69
SYNE1-203ENST00000354674 MOCS3O95396 460 aa10.76□□□□□ -0.69
SYNE1-203ENST00000354674 VIMP08670 466 aaKnown RBP10.76□□□□□ -0.69
SYNE1-203ENST00000354674 GARTP22102 1010 aa10.76□□□□□ -0.69
SYNE1-203ENST00000354674 VAV2P52735 878 aa10.76□□□□□ -0.69
SYNE1-203ENST00000354674 UBXN1Q04323 297 aa10.76□□□□□ -0.69
SYNE1-203ENST00000354674 HIC1Q14526 733 aa10.76□□□□□ -0.69
SYNE1-203ENST00000354674 MYBPC3Q14896 1274 aa10.76□□□□□ -0.69
SYNE1-203ENST00000354674 SLAIN1Q8ND83 568 aa10.76□□□□□ -0.69
SYNE1-203ENST00000354674 RAET1EQ8TD07 263 aa10.76□□□□□ -0.69
SYNE1-203ENST00000354674 CCT6BQ92526 530 aa10.76□□□□□ -0.69
SYNE1-203ENST00000354674 C2orf40Q9H1Z8 148 aa10.76□□□□□ -0.69
SYNE1-203ENST00000354674 SCN10AQ9Y5Y9 1956 aa10.76□□□□□ -0.69
SYNE1-203ENST00000354674 MSCO60682 206 aa10.76□□□□□ -0.69
SYNE1-203ENST00000354674 EDN1P05305 212 aa10.76□□□□□ -0.69
SYNE1-203ENST00000354674 MYL3P08590 195 aa10.76□□□□□ -0.69
SYNE1-203ENST00000354674 KRT16P08779 473 aa10.76□□□□□ -0.69
SYNE1-203ENST00000354674 EPB41P11171 864 aaKnown RBP10.76□□□□□ -0.69
SYNE1-203ENST00000354674 EPHB4P54760 987 aa10.76□□□□□ -0.69
SYNE1-203ENST00000354674 PTENP60484 403 aa10.76□□□□□ -0.69
SYNE1-203ENST00000354674 MAGOHP61326 146 aaKnown RBP10.76□□□□□ -0.69
SYNE1-203ENST00000354674 TFDP1Q14186 410 aa10.76□□□□□ -0.69
SYNE1-203ENST00000354674 ANO7Q6IWH7 933 aa10.76□□□□□ -0.69
SYNE1-203ENST00000354674 CYP26C1Q6V0L0 522 aa10.76□□□□□ -0.69
SYNE1-203ENST00000354674 KIAA0319LQ8IZA0 1049 aa10.76□□□□□ -0.69
SYNE1-203ENST00000354674 GALNT15Q8N3T1 639 aa10.76□□□□□ -0.69
SYNE1-203ENST00000354674 UBLCP1Q8WVY7 318 aaPredicted RBP10.76□□□□□ -0.69
SYNE1-203ENST00000354674 MAGOHBQ96A72 148 aaKnown RBP10.76□□□□□ -0.69
SYNE1-203ENST00000354674 CBWD1Q9BRT8 395 aa10.76□□□□□ -0.69
SYNE1-203ENST00000354674 IFT122Q9HBG6 1241 aa10.76□□□□□ -0.69
SYNE1-203ENST00000354674 MLXIPLQ9NP71 852 aa10.76□□□□□ -0.69
SYNE1-203ENST00000354674 SETD4Q9NVD3 440 aa10.76□□□□□ -0.69
SYNE1-203ENST00000354674 HSPBP1Q9NZL4 362 aa10.76□□□□□ -0.69
SYNE1-203ENST00000354674 ARMCX3Q9UH62 379 aaPredicted RBP10.76□□□□□ -0.69
SYNE1-203ENST00000354674 K7ERI5 159 aa10.75□□□□□ -0.69
SYNE1-203ENST00000354674 BUB1O43683 1085 aa10.75□□□□□ -0.69
SYNE1-203ENST00000354674 SUPT3HO75486 399 aa10.75□□□□□ -0.69
SYNE1-203ENST00000354674 HEXIM1O94992 359 aaKnown RBP10.75□□□□□ -0.69
SYNE1-203ENST00000354674 C6orf222P0C671 652 aaPredicted RBP10.75□□□□□ -0.69
SYNE1-203ENST00000354674 IMPDH2P12268 514 aa10.75□□□□□ -0.69
SYNE1-203ENST00000354674 CKAP4Q07065 602 aaKnown RBP10.75□□□□□ -0.69
SYNE1-203ENST00000354674 ENPEPQ07075 957 aa10.75□□□□□ -0.69
SYNE1-203ENST00000354674 TMEM110Q86TL2 294 aa10.75□□□□□ -0.69
SYNE1-203ENST00000354674 RHPN2Q8IUC4 686 aa10.75□□□□□ -0.69
SYNE1-203ENST00000354674 MTG1Q9BT17 334 aaPredicted RBP10.75□□□□□ -0.69
SYNE1-203ENST00000354674 FZD8Q9H461 694 aa10.75□□□□□ -0.69
SYNE1-203ENST00000354674 WBP1LQ9NX94 342 aa10.75□□□□□ -0.69
SYNE1-203ENST00000354674 NKX1-2Q9UD57 310 aaPredicted RBP10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms