RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 GTF2A1P52655 376 aaPredicted RBP20.59■□□□□ 0.89
COL9A3-201ENST00000343916 MYL6P60660 151 aa20.59■□□□□ 0.89
COL9A3-201ENST00000343916 OSTNP61366 133 aa20.59■□□□□ 0.89
COL9A3-201ENST00000343916 LAMTOR4Q0VGL1 99 aa20.59■□□□□ 0.89
COL9A3-201ENST00000343916 TMEM63BQ5T3F8 832 aa20.59■□□□□ 0.89
COL9A3-201ENST00000343916 CCDC114Q96M63 670 aa20.59■□□□□ 0.89
COL9A3-201ENST00000343916 ASCC2Q9H1I8 757 aaPredicted RBP20.59■□□□□ 0.89
COL9A3-201ENST00000343916 TOM1L1O75674 476 aa20.58■□□□□ 0.89
COL9A3-201ENST00000343916 FAM107AO95990 144 aa20.58■□□□□ 0.89
COL9A3-201ENST00000343916 IFI35P80217 286 aaPredicted RBP20.58■□□□□ 0.89
COL9A3-201ENST00000343916 CHADLQ6NUI6 762 aa20.58■□□□□ 0.89
COL9A3-201ENST00000343916 DDX23Q9BUQ8 820 aaKnown RBP20.58■□□□□ 0.89
COL9A3-201ENST00000343916 MRPL4Q9BYD3 311 aaKnown RBP20.58■□□□□ 0.89
COL9A3-201ENST00000343916 DCLK3Q9C098 648 aa20.58■□□□□ 0.89
COL9A3-201ENST00000343916 SPON1Q9HCB6 807 aa20.58■□□□□ 0.89
COL9A3-201ENST00000343916 CNTN6Q9UQ52 1028 aa20.58■□□□□ 0.89
COL9A3-201ENST00000343916 ZBTB42B2RXF5 422 aa20.58■□□□□ 0.88
COL9A3-201ENST00000343916 ASS1P00966 412 aaKnown RBP20.58■□□□□ 0.88
COL9A3-201ENST00000343916 TGFB3P10600 412 aa20.58■□□□□ 0.88
COL9A3-201ENST00000343916 RARGP13631 454 aa20.58■□□□□ 0.88
COL9A3-201ENST00000343916 TCF4P15884 667 aa20.58■□□□□ 0.88
COL9A3-201ENST00000343916 ATP13A4Q4VNC1 1196 aa20.58■□□□□ 0.88
COL9A3-201ENST00000343916 PLEKHA7Q6IQ23 1121 aa20.58■□□□□ 0.88
COL9A3-201ENST00000343916 ZPBP2Q6X784 338 aa20.58■□□□□ 0.88
COL9A3-201ENST00000343916 TRIM72Q6ZMU5 477 aa20.58■□□□□ 0.88
COL9A3-201ENST00000343916 PHF13Q86YI8 300 aaPredicted RBP20.58■□□□□ 0.88
COL9A3-201ENST00000343916 KAT2BQ92831 832 aa20.58■□□□□ 0.88
COL9A3-201ENST00000343916 CCDC113Q9H0I3 377 aa20.58■□□□□ 0.88
COL9A3-201ENST00000343916 AAASQ9NRG9 546 aa20.58■□□□□ 0.88
COL9A3-201ENST00000343916 NOP56O00567 594 aaKnown RBP20.57■□□□□ 0.88
COL9A3-201ENST00000343916 TRAPPC3O43617 180 aa20.57■□□□□ 0.88
COL9A3-201ENST00000343916 CNMDO75829 334 aa20.57■□□□□ 0.88
COL9A3-201ENST00000343916 BRD2P25440 801 aaKnown RBP20.57■□□□□ 0.88
COL9A3-201ENST00000343916 CHKAP35790 457 aa20.57■□□□□ 0.88
COL9A3-201ENST00000343916 RHPN2Q8IUC4 686 aa20.57■□□□□ 0.88
COL9A3-201ENST00000343916 GADD45GIP1Q8TAE8 222 aaPredicted RBP20.57■□□□□ 0.88
COL9A3-201ENST00000343916 RAPGEF5Q92565 580 aa20.57■□□□□ 0.88
COL9A3-201ENST00000343916 SLCO2A1Q92959 643 aa20.57■□□□□ 0.88
COL9A3-201ENST00000343916 GPR20Q99678 358 aa20.57■□□□□ 0.88
COL9A3-201ENST00000343916 ACO2Q99798 780 aaKnown RBP20.57■□□□□ 0.88
COL9A3-201ENST00000343916 FHDC1Q9C0D6 1143 aaPredicted RBP20.57■□□□□ 0.88
COL9A3-201ENST00000343916 MRPL47Q9HD33 250 aaKnown RBP20.57■□□□□ 0.88
COL9A3-201ENST00000343916 GMNCA6NCL1 334 aa20.56■□□□□ 0.88
COL9A3-201ENST00000343916 PRKCBP05771 671 aa20.56■□□□□ 0.88
COL9A3-201ENST00000343916 WEE2P0C1S8 567 aa20.56■□□□□ 0.88
COL9A3-201ENST00000343916 POTEJP0CG39 1038 aa20.56■□□□□ 0.88
COL9A3-201ENST00000343916 BYSLQ13895 437 aaKnown RBP20.56■□□□□ 0.88
COL9A3-201ENST00000343916 SLMAPQ14BN4 828 aa20.56■□□□□ 0.88
COL9A3-201ENST00000343916 Q3C1V9 767 aa20.56■□□□□ 0.88
COL9A3-201ENST00000343916 SCARA5Q6ZMJ2 495 aa20.56■□□□□ 0.88
COL9A3-201ENST00000343916 WDR49Q8IV35 697 aa20.56■□□□□ 0.88
COL9A3-201ENST00000343916 RHOT1Q8IXI2 618 aa20.56■□□□□ 0.88
COL9A3-201ENST00000343916 THNSL1Q8IYQ7 743 aa20.56■□□□□ 0.88
COL9A3-201ENST00000343916 COPS5Q92905 334 aa20.56■□□□□ 0.88
COL9A3-201ENST00000343916 FGD4Q96M96 766 aa20.56■□□□□ 0.88
COL9A3-201ENST00000343916 SOCS7O14512 581 aa20.56■□□□□ 0.88
COL9A3-201ENST00000343916 RGS16O15492 202 aaPredicted RBP20.56■□□□□ 0.88
COL9A3-201ENST00000343916 ACSL3O95573 720 aa20.56■□□□□ 0.88
COL9A3-201ENST00000343916 IVDP26440 423 aa20.56■□□□□ 0.88
COL9A3-201ENST00000343916 TFAMQ00059 246 aaKnown RBP20.56■□□□□ 0.88
COL9A3-201ENST00000343916 KLF1Q13351 362 aaPredicted RBP20.56■□□□□ 0.88
COL9A3-201ENST00000343916 QPCTQ16769 361 aa20.56■□□□□ 0.88
COL9A3-201ENST00000343916 B4GALNT4Q76KP1 1039 aa20.56■□□□□ 0.88
COL9A3-201ENST00000343916 PRUNE1Q86TP1 453 aa20.56■□□□□ 0.88
COL9A3-201ENST00000343916 SULF1Q8IWU6 871 aa20.56■□□□□ 0.88
COL9A3-201ENST00000343916 FBXO16Q8IX29 292 aaPredicted RBP20.56■□□□□ 0.88
COL9A3-201ENST00000343916 TMEM130Q8N3G9 435 aa20.56■□□□□ 0.88
COL9A3-201ENST00000343916 CEP120Q8N960 986 aa20.56■□□□□ 0.88
COL9A3-201ENST00000343916 PWWP2AQ96N64 755 aa20.56■□□□□ 0.88
COL9A3-201ENST00000343916 CDC42EP4Q9H3Q1 356 aaKnown RBP20.56■□□□□ 0.88
COL9A3-201ENST00000343916 A0A0G2JMZ2 1700 aa20.56■□□□□ 0.88
COL9A3-201ENST00000343916 OTOFQ9HC10 1997 aa20.56■□□□□ 0.88
COL9A3-201ENST00000343916 B4GALT5O43286 388 aa20.55■□□□□ 0.88
COL9A3-201ENST00000343916 ZNF132P52740 706 aa20.55■□□□□ 0.88
COL9A3-201ENST00000343916 EFNA5P52803 228 aa20.55■□□□□ 0.88
COL9A3-201ENST00000343916 MAPK6Q16659 721 aa20.55■□□□□ 0.88
COL9A3-201ENST00000343916 WDR78Q5VTH9 848 aa20.55■□□□□ 0.88
COL9A3-201ENST00000343916 IER5Q5VY09 327 aa20.55■□□□□ 0.88
COL9A3-201ENST00000343916 PGM2Q96G03 612 aa20.55■□□□□ 0.88
COL9A3-201ENST00000343916 NLRP4Q96MN2 994 aa20.55■□□□□ 0.88
COL9A3-201ENST00000343916 SELENOSQ9BQE4 189 aa20.55■□□□□ 0.88
COL9A3-201ENST00000343916 A0A0G2JLL6 359 aaPredicted RBP20.55■□□□□ 0.88
COL9A3-201ENST00000343916 PI4K2BG5E9Z4 385 aa20.55■□□□□ 0.88
COL9A3-201ENST00000343916 ITGA8P53708 1063 aa20.55■□□□□ 0.88
COL9A3-201ENST00000343916 C1QBPQ07021 282 aaKnown RBP20.55■□□□□ 0.88
COL9A3-201ENST00000343916 ADCY2Q08462 1091 aa20.55■□□□□ 0.88
COL9A3-201ENST00000343916 PRRT2Q7Z6L0 340 aaPredicted RBP20.55■□□□□ 0.88
COL9A3-201ENST00000343916 UBR7Q8N806 425 aa20.55■□□□□ 0.88
COL9A3-201ENST00000343916 FEZF2Q8TBJ5 459 aa20.55■□□□□ 0.88
COL9A3-201ENST00000343916 DCPSQ96C86 337 aaKnown RBP20.55■□□□□ 0.88
COL9A3-201ENST00000343916 VCPIP1Q96JH7 1222 aa20.55■□□□□ 0.88
COL9A3-201ENST00000343916 OSBPL8Q9BZF1 889 aa20.55■□□□□ 0.88
COL9A3-201ENST00000343916 CISHQ9NSE2 258 aa20.55■□□□□ 0.88
COL9A3-201ENST00000343916 WHRNQ9P202 907 aa20.55■□□□□ 0.88
COL9A3-201ENST00000343916 MCM3APO60318 1980 aa20.55■□□□□ 0.88
COL9A3-201ENST00000343916 ABLIM1O14639 778 aa20.54■□□□□ 0.88
COL9A3-201ENST00000343916 OGTO15294 1046 aa20.54■□□□□ 0.88
COL9A3-201ENST00000343916 PSTPIP1O43586 416 aa20.54■□□□□ 0.88
COL9A3-201ENST00000343916 MMP8P22894 467 aa20.54■□□□□ 0.88
COL9A3-201ENST00000343916 ZFYVE27Q5T4F4 411 aa20.54■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms