RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 FDX1P10109 184 aa23.71■■□□□ 1.39
TRIM28-202ENST00000341753 SNRNP35Q16560 246 aaKnown RBP23.71■■□□□ 1.39
TRIM28-202ENST00000341753 KCTD17Q8N5Z5 321 aa23.71■■□□□ 1.39
TRIM28-202ENST00000341753 AGBL1Q96MI9 1066 aa23.71■■□□□ 1.39
TRIM28-202ENST00000341753 C12orf65Q9H3J6 166 aaKnown RBP23.71■■□□□ 1.39
TRIM28-202ENST00000341753 VPS37BQ9H9H4 285 aa23.71■■□□□ 1.39
TRIM28-202ENST00000341753 NPHS2Q9NP85 383 aa23.71■■□□□ 1.39
TRIM28-202ENST00000341753 KCND2Q9NZV8 630 aa23.71■■□□□ 1.39
TRIM28-202ENST00000341753 COL4A5P29400 1685 aa23.71■■□□□ 1.39
TRIM28-202ENST00000341753 PI4K2BG5E9Z4 385 aa23.7■■□□□ 1.39
TRIM28-202ENST00000341753 LIN7AO14910 233 aaPredicted RBP23.7■■□□□ 1.39
TRIM28-202ENST00000341753 BANF1O75531 89 aa23.7■■□□□ 1.39
TRIM28-202ENST00000341753 MYBPC2Q14324 1141 aa23.7■■□□□ 1.39
TRIM28-202ENST00000341753 GNPTABQ3T906 1256 aa23.7■■□□□ 1.39
TRIM28-202ENST00000341753 DENND1AQ8TEH3 1009 aa23.7■■□□□ 1.39
TRIM28-202ENST00000341753 MOV10L1Q9BXT6 1211 aaKnown RBP23.7■■□□□ 1.39
TRIM28-202ENST00000341753 HERC5Q9UII4 1024 aaKnown RBP23.7■■□□□ 1.39
TRIM28-202ENST00000341753 EDF1O60869 148 aaKnown RBP23.7■■□□□ 1.38
TRIM28-202ENST00000341753 MAN1A1P33908 653 aa23.7■■□□□ 1.38
TRIM28-202ENST00000341753 PASD1Q8IV76 773 aa23.7■■□□□ 1.38
TRIM28-202ENST00000341753 CCDC89Q8N998 374 aa23.7■■□□□ 1.38
TRIM28-202ENST00000341753 C10orf82Q8WW14 230 aa23.7■■□□□ 1.38
TRIM28-202ENST00000341753 NT5C1BQ96P26 610 aa23.7■■□□□ 1.38
TRIM28-202ENST00000341753 WDR11Q9BZH6 1224 aa23.7■■□□□ 1.38
TRIM28-202ENST00000341753 UBN1Q9NPG3 1134 aa23.7■■□□□ 1.38
TRIM28-202ENST00000341753 DCTN4Q9UJW0 460 aa23.7■■□□□ 1.38
TRIM28-202ENST00000341753 KRT10P13645 584 aa23.69■■□□□ 1.38
TRIM28-202ENST00000341753 PLS3P13797 630 aa23.69■■□□□ 1.38
TRIM28-202ENST00000341753 OVGP1Q12889 678 aa23.69■■□□□ 1.38
TRIM28-202ENST00000341753 MIER3Q7Z3K6 550 aa23.69■■□□□ 1.38
TRIM28-202ENST00000341753 MCOLN2Q8IZK6 566 aa23.69■■□□□ 1.38
TRIM28-202ENST00000341753 ACTL7BQ9Y614 415 aa23.69■■□□□ 1.38
TRIM28-202ENST00000341753 ADSSP30520 456 aa23.69■■□□□ 1.38
TRIM28-202ENST00000341753 KLF1Q13351 362 aaPredicted RBP23.69■■□□□ 1.38
TRIM28-202ENST00000341753 ATP13A4Q4VNC1 1196 aa23.69■■□□□ 1.38
TRIM28-202ENST00000341753 ZFYVE27Q5T4F4 411 aa23.69■■□□□ 1.38
TRIM28-202ENST00000341753 KRT39Q6A163 491 aa23.69■■□□□ 1.38
TRIM28-202ENST00000341753 FAM151AQ8WW52 585 aa23.69■■□□□ 1.38
TRIM28-202ENST00000341753 SMC6Q96SB8 1091 aa23.69■■□□□ 1.38
TRIM28-202ENST00000341753 SBDSQ9Y3A5 250 aaKnown RBP eCLIP23.69■■□□□ 1.38
TRIM28-202ENST00000341753 ALDH3A1P30838 453 aa23.68■■□□□ 1.38
TRIM28-202ENST00000341753 MTM1Q13496 603 aa23.68■■□□□ 1.38
TRIM28-202ENST00000341753 OTOAQ7RTW8 1153 aa23.68■■□□□ 1.38
TRIM28-202ENST00000341753 MTDHQ86UE4 582 aaKnown RBP23.68■■□□□ 1.38
TRIM28-202ENST00000341753 OGFOD1Q8N543 542 aa23.68■■□□□ 1.38
TRIM28-202ENST00000341753 MAIP1Q8WWC4 291 aa23.68■■□□□ 1.38
TRIM28-202ENST00000341753 SPIRE2Q8WWL2 714 aa23.68■■□□□ 1.38
TRIM28-202ENST00000341753 KIFAP3Q92845 792 aa23.68■■□□□ 1.38
TRIM28-202ENST00000341753 OSBPL8Q9BZF1 889 aa23.68■■□□□ 1.38
TRIM28-202ENST00000341753 ZNFX1Q9P2E3 1918 aaKnown RBP23.68■■□□□ 1.38
TRIM28-202ENST00000341753 DCTN3O75935 186 aa23.68■■□□□ 1.38
TRIM28-202ENST00000341753 ATP5HO75947 161 aa23.68■■□□□ 1.38
TRIM28-202ENST00000341753 CFHP08603 1231 aa23.68■■□□□ 1.38
TRIM28-202ENST00000341753 CCDC125Q86Z20 511 aa23.68■■□□□ 1.38
TRIM28-202ENST00000341753 ASAP3Q8TDY4 903 aa23.68■■□□□ 1.38
TRIM28-202ENST00000341753 SYT15Q9BQS2 421 aa23.68■■□□□ 1.38
TRIM28-202ENST00000341753 ZHX2Q9Y6X8 837 aa23.68■■□□□ 1.38
TRIM28-202ENST00000341753 GOLGA8SH3BPF8 625 aa23.68■■□□□ 1.38
TRIM28-202ENST00000341753 GOLGA8MH3BSY2 632 aa23.68■■□□□ 1.38
TRIM28-202ENST00000341753 SARNPP82979 210 aaKnown RBP23.68■■□□□ 1.38
TRIM28-202ENST00000341753 PDK4Q16654 411 aa23.68■■□□□ 1.38
TRIM28-202ENST00000341753 HHATQ5VTY9 493 aa23.68■■□□□ 1.38
TRIM28-202ENST00000341753 LDHDQ86WU2 507 aa23.68■■□□□ 1.38
TRIM28-202ENST00000341753 INPP5DQ92835 1189 aa23.68■■□□□ 1.38
TRIM28-202ENST00000341753 HAUS1Q96CS2 278 aa23.68■■□□□ 1.38
TRIM28-202ENST00000341753 ALG13Q9NP73 1137 aaKnown RBP23.68■■□□□ 1.38
TRIM28-202ENST00000341753 HOMER2Q9NSB8 354 aa23.68■■□□□ 1.38
TRIM28-202ENST00000341753 ZFP69BQ9UJL9 534 aa23.68■■□□□ 1.38
TRIM28-202ENST00000341753 MAGEB2O15479 319 aa23.67■■□□□ 1.38
TRIM28-202ENST00000341753 ATP6V1C1P21283 382 aa23.67■■□□□ 1.38
TRIM28-202ENST00000341753 KLRC2P26717 231 aa23.67■■□□□ 1.38
TRIM28-202ENST00000341753 MXRA7P84157 204 aa23.67■■□□□ 1.38
TRIM28-202ENST00000341753 BIRC2Q13490 618 aa23.67■■□□□ 1.38
TRIM28-202ENST00000341753 PLEKHG4Q58EX7 1191 aa23.67■■□□□ 1.38
TRIM28-202ENST00000341753 LMBRD2Q68DH5 695 aaPredicted RBP23.67■■□□□ 1.38
TRIM28-202ENST00000341753 NLRP9Q7RTR0 991 aa23.67■■□□□ 1.38
TRIM28-202ENST00000341753 APBB1IPQ7Z5R6 666 aaPredicted RBP23.67■■□□□ 1.38
TRIM28-202ENST00000341753 ZCCHC9Q8N567 271 aaKnown RBP23.67■■□□□ 1.38
TRIM28-202ENST00000341753 POMGNT1Q8WZA1 660 aa23.67■■□□□ 1.38
TRIM28-202ENST00000341753 CFAP57Q96MR6 1250 aa23.67■■□□□ 1.38
TRIM28-202ENST00000341753 MIPEPQ99797 713 aa23.67■■□□□ 1.38
TRIM28-202ENST00000341753 C11orf70Q9BRQ4 267 aa23.67■■□□□ 1.38
TRIM28-202ENST00000341753 RAB20Q9NX57 234 aa23.67■■□□□ 1.38
TRIM28-202ENST00000341753 PECAM1P16284 738 aaPredicted RBP23.67■■□□□ 1.38
TRIM28-202ENST00000341753 INHBEP58166 350 aa23.67■■□□□ 1.38
TRIM28-202ENST00000341753 NOP14P78316 857 aaKnown RBP23.67■■□□□ 1.38
TRIM28-202ENST00000341753 CENPCQ03188 943 aa23.67■■□□□ 1.38
TRIM28-202ENST00000341753 KHDC1Q4VXA5 237 aaKnown RBP23.67■■□□□ 1.38
TRIM28-202ENST00000341753 LVRNQ6Q4G3 990 aa23.67■■□□□ 1.38
TRIM28-202ENST00000341753 LMNTD2Q8IXW0 634 aa23.67■■□□□ 1.38
TRIM28-202ENST00000341753 CPXCR1Q8N123 301 aa23.67■■□□□ 1.38
TRIM28-202ENST00000341753 IL31RAQ8NI17 732 aa23.67■■□□□ 1.38
TRIM28-202ENST00000341753 GMLQ99445 158 aa23.67■■□□□ 1.38
TRIM28-202ENST00000341753 MAK16Q9BXY0 300 aaKnown RBP23.67■■□□□ 1.38
TRIM28-202ENST00000341753 RANBP17Q9H2T7 1088 aaKnown RBP23.67■■□□□ 1.38
TRIM28-202ENST00000341753 PIDD1Q9HB75 910 aa23.67■■□□□ 1.38
TRIM28-202ENST00000341753 COL20A1Q9P218 1284 aa23.67■■□□□ 1.38
TRIM28-202ENST00000341753 KIF3CO14782 793 aa23.66■■□□□ 1.38
TRIM28-202ENST00000341753 ITGB5P18084 799 aa23.66■■□□□ 1.38
TRIM28-202ENST00000341753 RARRES1P49788 294 aa23.66■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms