RNA–Protein interactions for RNA: ENST00000340541.4

VAPA-201, Transcript of VAMP associated protein A, humanhuman

TSL 5 BASIC

Gene VAPA, Length 1,227 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPA-201ENST00000340541 ARMCX5Q6P1M9 558 aa16.69■□□□□ 0.26
VAPA-201ENST00000340541 TMC5Q6UXY8 1006 aa16.69■□□□□ 0.26
VAPA-201ENST00000340541 CCDC149Q6ZUS6 474 aa16.69■□□□□ 0.26
VAPA-201ENST00000340541 FMR1NBQ8N0W7 255 aaPredicted RBP16.69■□□□□ 0.26
VAPA-201ENST00000340541 ENGASEQ8NFI3 743 aa16.69■□□□□ 0.26
VAPA-201ENST00000340541 SUSD3Q96L08 255 aa16.69■□□□□ 0.26
VAPA-201ENST00000340541 AGPAT3Q9NRZ7 376 aa16.69■□□□□ 0.26
VAPA-201ENST00000340541 MTRRQ9UBK8 725 aa16.69■□□□□ 0.26
VAPA-201ENST00000340541 SCN1AP35498 2009 aa16.69■□□□□ 0.26
VAPA-201ENST00000340541 C2orf16Q68DN1 1984 aa16.68■□□□□ 0.26
VAPA-201ENST00000340541 ANO9A1A5B4 782 aa16.68■□□□□ 0.26
VAPA-201ENST00000340541 SPDYE4A6NLX3 237 aa16.68■□□□□ 0.26
VAPA-201ENST00000340541 TGM5O43548 720 aa16.68■□□□□ 0.26
VAPA-201ENST00000340541 XPOTO43592 962 aaKnown RBP16.68■□□□□ 0.26
VAPA-201ENST00000340541 IL18RAPO95256 599 aa16.68■□□□□ 0.26
VAPA-201ENST00000340541 PAPLNO95428 1278 aa16.68■□□□□ 0.26
VAPA-201ENST00000340541 LDHAP00338 332 aaKnown RBP16.68■□□□□ 0.26
VAPA-201ENST00000340541 GLUD1P00367 558 aa16.68■□□□□ 0.26
VAPA-201ENST00000340541 RPN1P04843 607 aaKnown RBP16.68■□□□□ 0.26
VAPA-201ENST00000340541 CLCN5P51795 746 aa16.68■□□□□ 0.26
VAPA-201ENST00000340541 SNW1Q13573 536 aaKnown RBP16.68■□□□□ 0.26
VAPA-201ENST00000340541 MRPL58Q14197 206 aaKnown RBP16.68■□□□□ 0.26
VAPA-201ENST00000340541 PDXDC1Q6P996 788 aa16.68■□□□□ 0.26
VAPA-201ENST00000340541 PALB2Q86YC2 1186 aa16.68■□□□□ 0.26
VAPA-201ENST00000340541 GLYCTKQ8IVS8 523 aa16.68■□□□□ 0.26
VAPA-201ENST00000340541 NELFCDQ8IXH7 590 aa16.68■□□□□ 0.26
VAPA-201ENST00000340541 GPD1LQ8N335 351 aa16.68■□□□□ 0.26
VAPA-201ENST00000340541 BEST2Q8NFU1 509 aa16.68■□□□□ 0.26
VAPA-201ENST00000340541 PHOX2BQ99453 314 aa16.68■□□□□ 0.26
VAPA-201ENST00000340541 MAN1C1Q9NR34 630 aa16.68■□□□□ 0.26
VAPA-201ENST00000340541 EXOC1Q9NV70 894 aa16.68■□□□□ 0.26
VAPA-201ENST00000340541 NUB1Q9Y5A7 615 aa16.68■□□□□ 0.26
VAPA-201ENST00000340541 BACE2Q9Y5Z0 518 aa16.68■□□□□ 0.26
VAPA-201ENST00000340541 DENND4AQ7Z401 1863 aa16.67■□□□□ 0.26
VAPA-201ENST00000340541 PROB1E7EW31 1015 aa16.67■□□□□ 0.26
VAPA-201ENST00000340541 M0QZQ0 153 aa16.67■□□□□ 0.26
VAPA-201ENST00000340541 PIRO00625 290 aa16.67■□□□□ 0.26
VAPA-201ENST00000340541 SYN3O14994 580 aa16.67■□□□□ 0.26
VAPA-201ENST00000340541 KIAA0391O15091 583 aaKnown RBP16.67■□□□□ 0.26
VAPA-201ENST00000340541 TBC1D4O60343 1298 aa16.67■□□□□ 0.26
VAPA-201ENST00000340541 SPATA31D3P0C874 917 aa16.67■□□□□ 0.26
VAPA-201ENST00000340541 MCM4P33991 863 aa16.67■□□□□ 0.26
VAPA-201ENST00000340541 PSMD2Q13200 908 aa16.67■□□□□ 0.26
VAPA-201ENST00000340541 VARS2Q5ST30 1063 aaKnown RBP16.67■□□□□ 0.26
VAPA-201ENST00000340541 C9orf57Q5W0N0 161 aa16.67■□□□□ 0.26
VAPA-201ENST00000340541 ASTLQ6HA08 431 aaPredicted RBP16.67■□□□□ 0.26
VAPA-201ENST00000340541 SPATA31D4Q6ZUB0 917 aa16.67■□□□□ 0.26
VAPA-201ENST00000340541 CBWD2Q8IUF1 395 aa16.67■□□□□ 0.26
VAPA-201ENST00000340541 RBAKQ9NYW8 714 aaPredicted RBP16.67■□□□□ 0.26
VAPA-201ENST00000340541 HSPBP1Q9NZL4 362 aa16.67■□□□□ 0.26
VAPA-201ENST00000340541 IGSF9Q9P2J2 1179 aa16.67■□□□□ 0.26
VAPA-201ENST00000340541 TSC2P49815 1807 aa16.66■□□□□ 0.26
VAPA-201ENST00000340541 SPTLC1O15269 473 aa16.66■□□□□ 0.26
VAPA-201ENST00000340541 RHOBTB3O94955 611 aa16.66■□□□□ 0.26
VAPA-201ENST00000340541 PDGFBP01127 241 aaPredicted RBP16.66■□□□□ 0.26
VAPA-201ENST00000340541 ASGR2P07307 311 aa16.66■□□□□ 0.26
VAPA-201ENST00000340541 OR1D2P34982 312 aa16.66■□□□□ 0.26
VAPA-201ENST00000340541 SNRPFP62306 86 aaKnown RBP16.66■□□□□ 0.26
VAPA-201ENST00000340541 TDGQ13569 410 aa16.66■□□□□ 0.26
VAPA-201ENST00000340541 RAB33AQ14088 237 aa16.66■□□□□ 0.26
VAPA-201ENST00000340541 KNOP1Q1ED39 458 aaKnown RBP16.66■□□□□ 0.26
VAPA-201ENST00000340541 SCARA3Q6AZY7 606 aa16.66■□□□□ 0.26
VAPA-201ENST00000340541 ANKS3Q6ZW76 656 aa16.66■□□□□ 0.26
VAPA-201ENST00000340541 NT5DC4Q86YG4 428 aa16.66■□□□□ 0.26
VAPA-201ENST00000340541 C12orf56Q8IXR9 622 aa16.66■□□□□ 0.26
VAPA-201ENST00000340541 CXorf38Q8TB03 319 aa16.66■□□□□ 0.26
VAPA-201ENST00000340541 ATOH1Q92858 354 aaPredicted RBP16.66■□□□□ 0.26
VAPA-201ENST00000340541 NXPE3Q969Y0 559 aa16.66■□□□□ 0.26
VAPA-201ENST00000340541 FAM84AQ96KN4 292 aa16.66■□□□□ 0.26
VAPA-201ENST00000340541 PLEKHA4Q9H4M7 779 aa16.66■□□□□ 0.26
VAPA-201ENST00000340541 PDE11AQ9HCR9 933 aa16.66■□□□□ 0.26
VAPA-201ENST00000340541 DPP3Q9NY33 737 aa16.66■□□□□ 0.26
VAPA-201ENST00000340541 FBXW11Q9UKB1 542 aa16.66■□□□□ 0.26
VAPA-201ENST00000340541 PCDHB8Q9UN66 801 aa16.66■□□□□ 0.26
VAPA-201ENST00000340541 CACNA1HO95180 2353 aa16.66■□□□□ 0.26
VAPA-201ENST00000340541 CCDC195A0A1B0GUA6 201 aa16.65■□□□□ 0.26
VAPA-201ENST00000340541 CLIC2O15247 247 aa16.65■□□□□ 0.26
VAPA-201ENST00000340541 RFPL2O75678 378 aa16.65■□□□□ 0.26
VAPA-201ENST00000340541 ANP32AP39687 249 aaKnown RBP16.65■□□□□ 0.26
VAPA-201ENST00000340541 LILRA4P59901 499 aa16.65■□□□□ 0.26
VAPA-201ENST00000340541 FAM160A1Q05DH4 1040 aa16.65■□□□□ 0.26
VAPA-201ENST00000340541 SLC8B1Q6J4K2 584 aa16.65■□□□□ 0.26
VAPA-201ENST00000340541 ZNF707Q96C28 371 aaPredicted RBP16.65■□□□□ 0.26
VAPA-201ENST00000340541 KCTD10Q9H3F6 313 aa16.65■□□□□ 0.26
VAPA-201ENST00000340541 WDR6Q9NNW5 1121 aaKnown RBP16.65■□□□□ 0.26
VAPA-201ENST00000340541 CHMP5Q9NZZ3 219 aa16.65■□□□□ 0.26
VAPA-201ENST00000340541 CDY1Q9Y6F8 540 aa16.65■□□□□ 0.26
VAPA-201ENST00000340541 PTPRJQ12913 1337 aa16.65■□□□□ 0.26
VAPA-201ENST00000340541 GOLGA6L4A6NEF3 574 aa16.64■□□□□ 0.25
VAPA-201ENST00000340541 ZNF233A6NK53 670 aa16.64■□□□□ 0.25
VAPA-201ENST00000340541 KCNB1Q14721 858 aa16.64■□□□□ 0.25
VAPA-201ENST00000340541 HS2ST1Q7LGA3 356 aa16.64■□□□□ 0.25
VAPA-201ENST00000340541 C1orf127Q8N9H9 656 aa16.64■□□□□ 0.25
VAPA-201ENST00000340541 NOC3LQ8WTT2 800 aaKnown RBP16.64■□□□□ 0.25
VAPA-201ENST00000340541 BORCS6Q96GS4 357 aa16.64■□□□□ 0.25
VAPA-201ENST00000340541 MFSD1Q9H3U5 465 aa16.64■□□□□ 0.25
VAPA-201ENST00000340541 KCNK12Q9HB15 430 aa16.64■□□□□ 0.25
VAPA-201ENST00000340541 CGNQ9P2M7 1197 aaKnown RBP16.64■□□□□ 0.25
VAPA-201ENST00000340541 FBXL5Q9UKA1 691 aa16.64■□□□□ 0.25
VAPA-201ENST00000340541 H0Y858 1186 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms