RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 LMNTD2Q8IXW0 634 aa12.62□□□□□ -0.39
USP1-201ENST00000339950 CYP4X1Q8N118 509 aa12.62□□□□□ -0.39
USP1-201ENST00000339950 CNKSR2Q8WXI2 1034 aa12.62□□□□□ -0.39
USP1-201ENST00000339950 RIT2Q99578 217 aa12.62□□□□□ -0.39
USP1-201ENST00000339950 FAM129AQ9BZQ8 928 aa12.62□□□□□ -0.39
USP1-201ENST00000339950 NOD2Q9HC29 1040 aa12.62□□□□□ -0.39
USP1-201ENST00000339950 MYOZ2Q9NPC6 264 aa12.62□□□□□ -0.39
USP1-201ENST00000339950 CNOT7Q9UIV1 285 aaKnown RBP12.62□□□□□ -0.39
USP1-201ENST00000339950 GTF3C4Q9UKN8 822 aa12.62□□□□□ -0.39
USP1-201ENST00000339950 C2orf71A6NGG8 1288 aa12.62□□□□□ -0.39
USP1-201ENST00000339950 CBX6O95503 412 aa12.62□□□□□ -0.39
USP1-201ENST00000339950 GGPS1O95749 300 aa12.62□□□□□ -0.39
USP1-201ENST00000339950 PAX7P23759 505 aa12.62□□□□□ -0.39
USP1-201ENST00000339950 MUM1Q2TAK8 710 aa12.62□□□□□ -0.39
USP1-201ENST00000339950 GLRA4Q5JXX5 417 aa12.62□□□□□ -0.39
USP1-201ENST00000339950 ZDHHC14Q8IZN3 488 aa12.62□□□□□ -0.39
USP1-201ENST00000339950 FUKQ8N0W3 1084 aa12.62□□□□□ -0.39
USP1-201ENST00000339950 MOV10L1Q9BXT6 1211 aaKnown RBP12.62□□□□□ -0.39
USP1-201ENST00000339950 USP15Q9Y4E8 981 aaPredicted RBP12.62□□□□□ -0.39
USP1-201ENST00000339950 ARHGAP42A6NI28 874 aa12.62□□□□□ -0.39
USP1-201ENST00000339950 INHBAP08476 426 aa12.62□□□□□ -0.39
USP1-201ENST00000339950 ADSSP30520 456 aa12.62□□□□□ -0.39
USP1-201ENST00000339950 DRP2Q13474 957 aa12.62□□□□□ -0.39
USP1-201ENST00000339950 PKN2Q16513 984 aaKnown RBP12.62□□□□□ -0.39
USP1-201ENST00000339950 FAM102AQ5T9C2 384 aaPredicted RBP12.62□□□□□ -0.39
USP1-201ENST00000339950 AGBL2Q5U5Z8 902 aa12.62□□□□□ -0.39
USP1-201ENST00000339950 MIS18BP1Q6P0N0 1132 aa12.62□□□□□ -0.39
USP1-201ENST00000339950 GMCL1P1Q8NEA9 526 aa12.62□□□□□ -0.39
USP1-201ENST00000339950 CCDC110Q8TBZ0 833 aa12.62□□□□□ -0.39
USP1-201ENST00000339950 SMCHD1A6NHR9 2005 aa12.62□□□□□ -0.39
USP1-201ENST00000339950 PKD1L3Q7Z443 1732 aa12.62□□□□□ -0.39
USP1-201ENST00000339950 TAF11Q15544 211 aa12.62□□□□□ -0.39
USP1-201ENST00000339950 NBPF20Q3BBV1 942 aa12.62□□□□□ -0.39
USP1-201ENST00000339950 HYIQ5T013 277 aa12.62□□□□□ -0.39
USP1-201ENST00000339950 C11orf63Q6NUN7 778 aa12.62□□□□□ -0.39
USP1-201ENST00000339950 APBB1IPQ7Z5R6 666 aaPredicted RBP12.62□□□□□ -0.39
USP1-201ENST00000339950 CCNYQ8ND76 341 aa12.62□□□□□ -0.39
USP1-201ENST00000339950 NSMCE1Q8WV22 266 aa12.62□□□□□ -0.39
USP1-201ENST00000339950 SGSM3Q96HU1 749 aa12.62□□□□□ -0.39
USP1-201ENST00000339950 MRPL47Q9HD33 250 aaKnown RBP12.62□□□□□ -0.39
USP1-201ENST00000339950 SMYD2Q9NRG4 433 aa12.62□□□□□ -0.39
USP1-201ENST00000339950 FIS1Q9Y3D6 152 aa12.62□□□□□ -0.39
USP1-201ENST00000339950 LAMB4A4D0S4 1761 aa12.61□□□□□ -0.39
USP1-201ENST00000339950 BCL9LQ86UU0 1499 aa12.61□□□□□ -0.39
USP1-201ENST00000339950 TXNDC9O14530 226 aa12.61□□□□□ -0.39
USP1-201ENST00000339950 ZNF862O60290 1169 aa12.61□□□□□ -0.39
USP1-201ENST00000339950 MT-ND3P03897 115 aa12.61□□□□□ -0.39
USP1-201ENST00000339950 CHRNB2P17787 502 aa12.61□□□□□ -0.39
USP1-201ENST00000339950 KRT4P19013 534 aa12.61□□□□□ -0.39
USP1-201ENST00000339950 GMPSP49915 693 aaPredicted RBP12.61□□□□□ -0.39
USP1-201ENST00000339950 JAM2P57087 298 aa12.61□□□□□ -0.39
USP1-201ENST00000339950 CYP24A1Q07973 514 aa12.61□□□□□ -0.39
USP1-201ENST00000339950 EFTUD2Q15029 972 aaKnown RBP eCLIP12.61□□□□□ -0.394e-6■■■■□ 20.7
USP1-201ENST00000339950 FYB2Q5VWT5 728 aa12.61□□□□□ -0.39
USP1-201ENST00000339950 PCNX4Q63HM2 1172 aa12.61□□□□□ -0.39
USP1-201ENST00000339950 SCARA3Q6AZY7 606 aa12.61□□□□□ -0.39
USP1-201ENST00000339950 TATDN1Q6P1N9 297 aa12.61□□□□□ -0.39
USP1-201ENST00000339950 C3orf62Q6ZUJ4 267 aa12.61□□□□□ -0.39
USP1-201ENST00000339950 ZNF354CQ86Y25 554 aa12.61□□□□□ -0.39
USP1-201ENST00000339950 NME8Q8N427 588 aa12.61□□□□□ -0.39
USP1-201ENST00000339950 PAF1Q8N7H5 531 aa12.61□□□□□ -0.39
USP1-201ENST00000339950 HACL1Q9UJ83 578 aa12.61□□□□□ -0.39
USP1-201ENST00000339950 POLIQ9UNA4 740 aa12.61□□□□□ -0.39
USP1-201ENST00000339950 NR2E3Q9Y5X4 410 aa12.61□□□□□ -0.39
USP1-201ENST00000339950 ZMYM2Q9UBW7 1377 aa12.61□□□□□ -0.39
USP1-201ENST00000339950 M0QYV0 167 aa12.61□□□□□ -0.39
USP1-201ENST00000339950 TNNC2P02585 160 aa12.61□□□□□ -0.39
USP1-201ENST00000339950 HSPA6P17066 643 aa12.61□□□□□ -0.39
USP1-201ENST00000339950 DRD4P21917 467 aa12.61□□□□□ -0.39
USP1-201ENST00000339950 PHKA2P46019 1235 aa12.61□□□□□ -0.39
USP1-201ENST00000339950 CDH6P55285 790 aa12.61□□□□□ -0.39
USP1-201ENST00000339950 LY6KQ17RY6 165 aa12.61□□□□□ -0.39
USP1-201ENST00000339950 DCLK2Q8N568 766 aa12.61□□□□□ -0.39
USP1-201ENST00000339950 TOM1L1O75674 476 aa12.61□□□□□ -0.39
USP1-201ENST00000339950 AGTP01019 485 aa12.61□□□□□ -0.39
USP1-201ENST00000339950 PDGFRBP09619 1106 aa12.61□□□□□ -0.39
USP1-201ENST00000339950 PECAM1P16284 738 aaPredicted RBP12.61□□□□□ -0.39
USP1-201ENST00000339950 GAD2Q05329 585 aa12.61□□□□□ -0.39
USP1-201ENST00000339950 NFX1Q12986 1120 aaKnown RBP12.61□□□□□ -0.39
USP1-201ENST00000339950 TNFAIP1Q13829 316 aa12.61□□□□□ -0.39
USP1-201ENST00000339950 COBLL1Q53SF7 1204 aa12.61□□□□□ -0.39
USP1-201ENST00000339950 TXNRD3NBQ6F5E7 133 aa12.61□□□□□ -0.39
USP1-201ENST00000339950 MCOLN2Q8IZK6 566 aa12.61□□□□□ -0.39
USP1-201ENST00000339950 CNPY4Q8N129 248 aa12.61□□□□□ -0.39
USP1-201ENST00000339950 CCDC124Q96CT7 223 aaKnown RBP12.61□□□□□ -0.39
USP1-201ENST00000339950 HERPUD2Q9BSE4 406 aa12.61□□□□□ -0.39
USP1-201ENST00000339950 CYP26B1Q9NR63 512 aa12.61□□□□□ -0.39
USP1-201ENST00000339950 TJP2Q9UDY2 1190 aa12.61□□□□□ -0.39
USP1-201ENST00000339950 PCDHB2Q9Y5E7 798 aa12.61□□□□□ -0.39
USP1-201ENST00000339950 UBE4BO95155 1302 aa12.61□□□□□ -0.39
USP1-201ENST00000339950 APRTP07741 180 aa12.6□□□□□ -0.39
USP1-201ENST00000339950 RARGP13631 454 aa12.6□□□□□ -0.39
USP1-201ENST00000339950 ECHS1P30084 290 aa12.6□□□□□ -0.39
USP1-201ENST00000339950 FSTL1Q12841 308 aa12.6□□□□□ -0.39
USP1-201ENST00000339950 SGSM1Q2NKQ1 1148 aa12.6□□□□□ -0.39
USP1-201ENST00000339950 RASIP1Q5U651 963 aa12.6□□□□□ -0.39
USP1-201ENST00000339950 LVRNQ6Q4G3 990 aa12.6□□□□□ -0.39
USP1-201ENST00000339950 ZBTB8OSQ8IWT0 167 aa12.6□□□□□ -0.39
USP1-201ENST00000339950 TMEM161BQ8NDZ6 487 aa12.6□□□□□ -0.39
USP1-201ENST00000339950 CFAP61Q8NHU2 1237 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms