RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 KPNA1P52294 538 aaPredicted RBP10.74□□□□□ -0.69
USP54-201ENST00000339859 SOX10P56693 466 aa10.74□□□□□ -0.69
USP54-201ENST00000339859 GFPT1Q06210 699 aaPredicted RBP10.74□□□□□ -0.69
USP54-201ENST00000339859 FAM171A1Q5VUB5 890 aa10.74□□□□□ -0.69
USP54-201ENST00000339859 HERC6Q8IVU3 1022 aa10.74□□□□□ -0.69
USP54-201ENST00000339859 RBPJLQ9UBG7 517 aa10.74□□□□□ -0.69
USP54-201ENST00000339859 CAPN11Q9UMQ6 739 aa10.74□□□□□ -0.69
USP54-201ENST00000339859 I3L4J1 428 aa10.74□□□□□ -0.69
USP54-201ENST00000339859 AKAP5P24588 427 aa10.74□□□□□ -0.69
USP54-201ENST00000339859 SSTR3P32745 418 aaPredicted RBP10.74□□□□□ -0.69
USP54-201ENST00000339859 ZBTB16Q05516 673 aa10.74□□□□□ -0.69
USP54-201ENST00000339859 MTA1Q13330 715 aa10.74□□□□□ -0.69
USP54-201ENST00000339859 HHATQ5VTY9 493 aa10.74□□□□□ -0.69
USP54-201ENST00000339859 HASPINQ8TF76 798 aa10.74□□□□□ -0.69
USP54-201ENST00000339859 SCYL1Q96KG9 808 aa10.74□□□□□ -0.69
USP54-201ENST00000339859 TTC25Q96NG3 672 aa10.74□□□□□ -0.69
USP54-201ENST00000339859 MUC3BQ9H195 1237 aa10.74□□□□□ -0.69
USP54-201ENST00000339859 ZRANB2O95218 330 aaKnown RBP eCLIP10.74□□□□□ -0.69
USP54-201ENST00000339859 MXRA7P84157 204 aa10.74□□□□□ -0.69
USP54-201ENST00000339859 GRIN1Q05586 938 aa10.74□□□□□ -0.69
USP54-201ENST00000339859 DEUP1Q05D60 604 aa10.74□□□□□ -0.69
USP54-201ENST00000339859 CCDC149Q6ZUS6 474 aa10.74□□□□□ -0.69
USP54-201ENST00000339859 PCGF5Q86SE9 256 aa10.74□□□□□ -0.69
USP54-201ENST00000339859 UCMAQ8WVF2 138 aa10.74□□□□□ -0.69
USP54-201ENST00000339859 SMIM22K7EJ46 135 aa10.73□□□□□ -0.69
USP54-201ENST00000339859 OVOS1Q6IE37 1185 aa10.73□□□□□ -0.69
USP54-201ENST00000339859 RAB44Q7Z6P3 723 aaPredicted RBP10.73□□□□□ -0.69
USP54-201ENST00000339859 SLC35F6Q8N357 371 aa10.73□□□□□ -0.69
USP54-201ENST00000339859 ANKS4BQ8N8V4 417 aa10.73□□□□□ -0.69
USP54-201ENST00000339859 MAGEB5Q9BZ81 275 aa10.73□□□□□ -0.69
USP54-201ENST00000339859 DPH5Q9H2P9 285 aa10.73□□□□□ -0.69
USP54-201ENST00000339859 IGFLR1Q9H665 355 aa10.73□□□□□ -0.69
USP54-201ENST00000339859 MOSPD1Q9UJG1 213 aa10.73□□□□□ -0.69
USP54-201ENST00000339859 COL2A1P02458 1487 aaPredicted RBP10.73□□□□□ -0.69
USP54-201ENST00000339859 EML1O00423 815 aa10.73□□□□□ -0.69
USP54-201ENST00000339859 SLC12A3P55017 1021 aa10.73□□□□□ -0.69
USP54-201ENST00000339859 IRX5P78411 483 aaPredicted RBP10.73□□□□□ -0.69
USP54-201ENST00000339859 PTPN11Q06124 597 aaPredicted RBP10.73□□□□□ -0.69
USP54-201ENST00000339859 ANO4Q32M45 955 aa10.73□□□□□ -0.69
USP54-201ENST00000339859 NOMO2Q5JPE7 1267 aa10.73□□□□□ -0.69
USP54-201ENST00000339859 TRAPPC11Q7Z392 1133 aa10.73□□□□□ -0.69
USP54-201ENST00000339859 PCSK1NQ9UHG2 260 aa10.73□□□□□ -0.69
USP54-201ENST00000339859 Q9Y3F1 56 aa10.73□□□□□ -0.69
USP54-201ENST00000339859 PIGHQ14442 188 aaPredicted RBP10.73□□□□□ -0.69
USP54-201ENST00000339859 LRRC43Q8N309 656 aa10.73□□□□□ -0.69
USP54-201ENST00000339859 IL31RAQ8NI17 732 aa10.73□□□□□ -0.69
USP54-201ENST00000339859 NUP98P52948 1817 aa10.73□□□□□ -0.69
USP54-201ENST00000339859 KPNA2P52292 529 aaKnown RBP10.73□□□□□ -0.69
USP54-201ENST00000339859 ATP11AP98196 1134 aa10.73□□□□□ -0.69
USP54-201ENST00000339859 EVX2Q03828 476 aa10.73□□□□□ -0.69
USP54-201ENST00000339859 CBWD2Q8IUF1 395 aa10.73□□□□□ -0.69
USP54-201ENST00000339859 TMEM86AQ8N2M4 240 aa10.73□□□□□ -0.69
USP54-201ENST00000339859 CYP4F11Q9HBI6 524 aa10.73□□□□□ -0.69
USP54-201ENST00000339859 RIPK3Q9Y572 518 aa10.73□□□□□ -0.69
USP54-201ENST00000339859 ITIH6Q6UXX5 1313 aa10.73□□□□□ -0.69
USP54-201ENST00000339859 PIK3R2O00459 728 aa10.73□□□□□ -0.69
USP54-201ENST00000339859 UCHL3P15374 230 aa10.73□□□□□ -0.69
USP54-201ENST00000339859 SMPD1P17405 629 aa10.73□□□□□ -0.69
USP54-201ENST00000339859 HIRAP54198 1017 aaPredicted RBP10.73□□□□□ -0.69
USP54-201ENST00000339859 BCAT1P54687 386 aa10.73□□□□□ -0.69
USP54-201ENST00000339859 AMHR2Q16671 573 aa10.73□□□□□ -0.69
USP54-201ENST00000339859 GPAT2Q6NUI2 795 aa10.73□□□□□ -0.69
USP54-201ENST00000339859 LRRC8DQ7L1W4 858 aa10.73□□□□□ -0.69
USP54-201ENST00000339859 SLC7A14Q8TBB6 771 aa10.73□□□□□ -0.69
USP54-201ENST00000339859 FAF2Q96CS3 445 aa10.73□□□□□ -0.69
USP54-201ENST00000339859 CACYBPQ9HB71 228 aaKnown RBP10.73□□□□□ -0.69
USP54-201ENST00000339859 KRT82Q9NSB4 513 aa10.73□□□□□ -0.69
USP54-201ENST00000339859 NOL12Q9UGY1 213 aaKnown RBP eCLIP10.73□□□□□ -0.69
USP54-201ENST00000339859 V9GYY5 206 aaPredicted RBP10.73□□□□□ -0.69
USP54-201ENST00000339859 PMLP29590 882 aa10.72□□□□□ -0.69
USP54-201ENST00000339859 CES5AQ6NT32 575 aa10.72□□□□□ -0.69
USP54-201ENST00000339859 NRAPQ86VF7 1730 aa10.72□□□□□ -0.69
USP54-201ENST00000339859 UBA3Q8TBC4 463 aa10.72□□□□□ -0.69
USP54-201ENST00000339859 ZNF507Q8TCN5 953 aa10.72□□□□□ -0.69
USP54-201ENST00000339859 PDCD6IPQ8WUM4 868 aaKnown RBP10.72□□□□□ -0.69
USP54-201ENST00000339859 INPP4AQ96PE3 977 aaPredicted RBP10.72□□□□□ -0.69
USP54-201ENST00000339859 PPP1R2P1Q96PQ5 205 aa10.72□□□□□ -0.69
USP54-201ENST00000339859 DNAJC18Q9H819 358 aa10.72□□□□□ -0.69
USP54-201ENST00000339859 GIT1Q9Y2X7 761 aa10.72□□□□□ -0.69
USP54-201ENST00000339859 CNTNAP2Q9UHC6 1331 aa10.72□□□□□ -0.69
USP54-201ENST00000339859 TRIM66O15016 1216 aa10.72□□□□□ -0.69
USP54-201ENST00000339859 GJB1P08034 283 aa10.72□□□□□ -0.69
USP54-201ENST00000339859 CKBP12277 381 aa10.72□□□□□ -0.69
USP54-201ENST00000339859 AP1B1Q10567 949 aa10.72□□□□□ -0.69
USP54-201ENST00000339859 PTK7Q13308 1070 aa10.72□□□□□ -0.69
USP54-201ENST00000339859 HEATR6Q6AI08 1181 aaKnown RBP10.72□□□□□ -0.69
USP54-201ENST00000339859 SAPCD2Q86UD0 394 aa10.72□□□□□ -0.69
USP54-201ENST00000339859 RIN2Q8WYP3 895 aaPredicted RBP10.72□□□□□ -0.69
USP54-201ENST00000339859 ASIC4Q96FT7 647 aa10.72□□□□□ -0.69
USP54-201ENST00000339859 DDX43Q9NXZ2 648 aaKnown RBP10.72□□□□□ -0.69
USP54-201ENST00000339859 UVRAGQ9P2Y5 699 aa10.72□□□□□ -0.69
USP54-201ENST00000339859 TNFSF13BQ9Y275 285 aa10.72□□□□□ -0.69
USP54-201ENST00000339859 MYL4P12829 197 aa10.72□□□□□ -0.69
USP54-201ENST00000339859 GPD1P21695 349 aa10.72□□□□□ -0.69
USP54-201ENST00000339859 EIF4BP23588 611 aaKnown RBP10.72□□□□□ -0.69
USP54-201ENST00000339859 PPM1EQ8WY54 764 aa10.72□□□□□ -0.69
USP54-201ENST00000339859 RFFLQ8WZ73 363 aa10.72□□□□□ -0.69
USP54-201ENST00000339859 PI4K2AQ9BTU6 479 aa10.72□□□□□ -0.69
USP54-201ENST00000339859 TLR8Q9NR97 1041 aaKnown RBP10.72□□□□□ -0.69
USP54-201ENST00000339859 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP10.72□□□□□ -0.696e-8■■□□□ 13.9
Retrieved 100 of 20,778 RNA–protein pairs in 127.9 ms