RNA–Protein interactions for RNA: ENST00000337841.4

SPTLC1-202, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SPTLC1, Length 946 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-202ENST00000337841 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.82□□□□□ -0.36
SPTLC1-202ENST00000337841 TAS1R1Q7RTX1 841 aa12.82□□□□□ -0.36
SPTLC1-202ENST00000337841 METTL23Q86XA0 190 aa12.82□□□□□ -0.36
SPTLC1-202ENST00000337841 IRF2BP1Q8IU81 584 aa12.82□□□□□ -0.36
SPTLC1-202ENST00000337841 TRIM59Q8IWR1 403 aa12.82□□□□□ -0.36
SPTLC1-202ENST00000337841 MRPL43Q8N983 215 aaKnown RBP12.82□□□□□ -0.36
SPTLC1-202ENST00000337841 C3orf58Q8NDZ4 430 aa12.82□□□□□ -0.36
SPTLC1-202ENST00000337841 TAF4BQ92750 862 aa12.82□□□□□ -0.36
SPTLC1-202ENST00000337841 SLC35C1Q96A29 364 aa12.82□□□□□ -0.36
SPTLC1-202ENST00000337841 SENP8Q96LD8 212 aa12.82□□□□□ -0.36
SPTLC1-202ENST00000337841 CNOT6LQ96LI5 555 aaKnown RBP12.82□□□□□ -0.36
SPTLC1-202ENST00000337841 TCF25Q9BQ70 676 aa12.82□□□□□ -0.36
SPTLC1-202ENST00000337841 IMPG2Q9BZV3 1241 aa12.82□□□□□ -0.36
SPTLC1-202ENST00000337841 CHST7Q9NS84 486 aa12.82□□□□□ -0.36
SPTLC1-202ENST00000337841 SAMSN1Q9NSI8 373 aaKnown RBP12.82□□□□□ -0.36
SPTLC1-202ENST00000337841 FANCLQ9NW38 375 aa12.82□□□□□ -0.36
SPTLC1-202ENST00000337841 MTMR10Q9NXD2 777 aa12.82□□□□□ -0.36
SPTLC1-202ENST00000337841 SIX4Q9UIU6 781 aa12.82□□□□□ -0.36
SPTLC1-202ENST00000337841 DSEQ9UL01 958 aa12.82□□□□□ -0.36
SPTLC1-202ENST00000337841 PCDHB8Q9UN66 801 aa12.82□□□□□ -0.36
SPTLC1-202ENST00000337841 PTPRSQ13332 1948 aa12.82□□□□□ -0.36
SPTLC1-202ENST00000337841 FNDC1Q4ZHG4 1894 aaPredicted RBP12.81□□□□□ -0.36
SPTLC1-202ENST00000337841 KCNJ18B7U540 433 aa12.81□□□□□ -0.36
SPTLC1-202ENST00000337841 H7C4K7 107 aa12.81□□□□□ -0.36
SPTLC1-202ENST00000337841 I3L4J1 428 aa12.81□□□□□ -0.36
SPTLC1-202ENST00000337841 M0QZQ0 153 aa12.81□□□□□ -0.36
SPTLC1-202ENST00000337841 CYB561D2O14569 222 aa12.81□□□□□ -0.36
SPTLC1-202ENST00000337841 P4HA2O15460 535 aa12.81□□□□□ -0.36
SPTLC1-202ENST00000337841 CLSTN1O94985 981 aa12.81□□□□□ -0.36
SPTLC1-202ENST00000337841 STAU1O95793 577 aaKnown RBP12.81□□□□□ -0.36
SPTLC1-202ENST00000337841 AFPP02771 609 aaKnown RBP12.81□□□□□ -0.36
SPTLC1-202ENST00000337841 FAM163BP0C2L3 166 aa12.81□□□□□ -0.36
SPTLC1-202ENST00000337841 ODC1P11926 461 aa12.81□□□□□ -0.36
SPTLC1-202ENST00000337841 P4HA1P13674 534 aa12.81□□□□□ -0.36
SPTLC1-202ENST00000337841 IGFBP6P24592 240 aaPredicted RBP12.81□□□□□ -0.36
SPTLC1-202ENST00000337841 EEF1GP26641 437 aaKnown RBP12.81□□□□□ -0.36
SPTLC1-202ENST00000337841 AARSP49588 968 aaKnown RBP eCLIP12.81□□□□□ -0.36
SPTLC1-202ENST00000337841 MXI1P50539 228 aa12.81□□□□□ -0.36
SPTLC1-202ENST00000337841 MYL6P60660 151 aa12.81□□□□□ -0.36
SPTLC1-202ENST00000337841 TPM4P67936 248 aa12.81□□□□□ -0.36
SPTLC1-202ENST00000337841 DSG1Q02413 1049 aa12.81□□□□□ -0.36
SPTLC1-202ENST00000337841 CREMQ03060 361 aa12.81□□□□□ -0.36
SPTLC1-202ENST00000337841 KCNH2Q12809 1159 aa12.81□□□□□ -0.36
SPTLC1-202ENST00000337841 KCNJ12Q14500 433 aa12.81□□□□□ -0.36
SPTLC1-202ENST00000337841 WDR44Q5JSH3 913 aa12.81□□□□□ -0.36
SPTLC1-202ENST00000337841 KIAA0319Q5VV43 1072 aa12.81□□□□□ -0.36
SPTLC1-202ENST00000337841 TDRD10Q5VZ19 366 aaKnown RBP12.81□□□□□ -0.36
SPTLC1-202ENST00000337841 C15orf39Q6ZRI6 1047 aa12.81□□□□□ -0.36
SPTLC1-202ENST00000337841 ANKS3Q6ZW76 656 aa12.81□□□□□ -0.36
SPTLC1-202ENST00000337841 RNF168Q8IYW5 571 aaPredicted RBP12.81□□□□□ -0.36
SPTLC1-202ENST00000337841 TMEM130Q8N3G9 435 aa12.81□□□□□ -0.36
SPTLC1-202ENST00000337841 AOPEPQ8N6M6 819 aa12.81□□□□□ -0.36
SPTLC1-202ENST00000337841 CXorf38Q8TB03 319 aa12.81□□□□□ -0.36
SPTLC1-202ENST00000337841 RIN2Q8WYP3 895 aaPredicted RBP12.81□□□□□ -0.36
SPTLC1-202ENST00000337841 FAM84AQ96KN4 292 aa12.81□□□□□ -0.36
SPTLC1-202ENST00000337841 VN1R3Q9BXE9 311 aa12.81□□□□□ -0.36
SPTLC1-202ENST00000337841 EMILIN2Q9BXX0 1053 aa12.81□□□□□ -0.36
SPTLC1-202ENST00000337841 ZBP1Q9H171 429 aa12.81□□□□□ -0.36
SPTLC1-202ENST00000337841 TSPY26PQ9H489 355 aa12.81□□□□□ -0.36
SPTLC1-202ENST00000337841 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.81□□□□□ -0.36
SPTLC1-202ENST00000337841 GDAP2Q9NXN4 497 aa12.81□□□□□ -0.36
SPTLC1-202ENST00000337841 C2CD2LO14523 706 aa12.8□□□□□ -0.36
SPTLC1-202ENST00000337841 FSCN2O14926 492 aa12.8□□□□□ -0.36
SPTLC1-202ENST00000337841 SPTLC1O15269 473 aa12.8□□□□□ -0.36
SPTLC1-202ENST00000337841 PMM2O15305 246 aa12.8□□□□□ -0.36
SPTLC1-202ENST00000337841 HLA-DRAP01903 254 aa12.8□□□□□ -0.36
SPTLC1-202ENST00000337841 TYMPP19971 482 aa12.8□□□□□ -0.36
SPTLC1-202ENST00000337841 PIK3CAP42336 1068 aa12.8□□□□□ -0.36
SPTLC1-202ENST00000337841 FMO5P49326 533 aa12.8□□□□□ -0.36
SPTLC1-202ENST00000337841 TNNC1P63316 161 aa12.8□□□□□ -0.36
SPTLC1-202ENST00000337841 CAMK1Q14012 370 aa12.8□□□□□ -0.36
SPTLC1-202ENST00000337841 ADGRE1Q14246 886 aa12.8□□□□□ -0.36
SPTLC1-202ENST00000337841 WDR72Q3MJ13 1102 aa12.8□□□□□ -0.36
SPTLC1-202ENST00000337841 TCP11X2Q5H9J9 407 aa12.8□□□□□ -0.36
SPTLC1-202ENST00000337841 ZNF667Q5HYK9 610 aa12.8□□□□□ -0.36
SPTLC1-202ENST00000337841 PLPP4Q5VZY2 271 aa12.8□□□□□ -0.36
SPTLC1-202ENST00000337841 LRSAM1Q6UWE0 723 aa12.8□□□□□ -0.36
SPTLC1-202ENST00000337841 DPH6Q7L8W6 267 aa12.8□□□□□ -0.36
SPTLC1-202ENST00000337841 THEM5Q8N1Q8 247 aa12.8□□□□□ -0.36
SPTLC1-202ENST00000337841 FBXL13Q8NEE6 735 aa12.8□□□□□ -0.36
SPTLC1-202ENST00000337841 MYLIPQ8WY64 445 aa12.8□□□□□ -0.36
SPTLC1-202ENST00000337841 PIK3R5Q8WYR1 880 aa12.8□□□□□ -0.36
SPTLC1-202ENST00000337841 MMS19Q96T76 1030 aa12.8□□□□□ -0.36
SPTLC1-202ENST00000337841 TUBGCP2Q9BSJ2 902 aa12.8□□□□□ -0.36
SPTLC1-202ENST00000337841 OXCT2Q9BYC2 517 aaPredicted RBP12.8□□□□□ -0.36
SPTLC1-202ENST00000337841 NSUN3Q9H649 340 aaKnown RBP12.8□□□□□ -0.36
SPTLC1-202ENST00000337841 TLE6Q9H808 572 aa12.8□□□□□ -0.36
SPTLC1-202ENST00000337841 RAB20Q9NX57 234 aa12.8□□□□□ -0.36
SPTLC1-202ENST00000337841 SNX9Q9Y5X1 595 aa12.8□□□□□ -0.36
SPTLC1-202ENST00000337841 IRAK3Q9Y616 596 aa12.8□□□□□ -0.36
SPTLC1-202ENST00000337841 MTCH2Q9Y6C9 303 aa12.8□□□□□ -0.36
SPTLC1-202ENST00000337841 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP12.79□□□□□ -0.36
SPTLC1-202ENST00000337841 C2orf71A6NGG8 1288 aa12.79□□□□□ -0.36
SPTLC1-202ENST00000337841 GOLGA6L19H0YKK7 550 aa12.79□□□□□ -0.36
SPTLC1-202ENST00000337841 PES1O00541 588 aaKnown RBP12.79□□□□□ -0.36
SPTLC1-202ENST00000337841 LILRB3O75022 631 aa12.79□□□□□ -0.36
SPTLC1-202ENST00000337841 CSPG5O95196 566 aa12.79□□□□□ -0.36
SPTLC1-202ENST00000337841 VNN1O95497 513 aa12.79□□□□□ -0.36
SPTLC1-202ENST00000337841 FOSL2P15408 326 aa12.79□□□□□ -0.36
SPTLC1-202ENST00000337841 TKTP29401 623 aaKnown RBP12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms