RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 ZNF707Q96C28 371 aaPredicted RBP17.12■□□□□ 0.33
CLN3-201ENST00000333496 RPGRIP1Q96KN7 1286 aa17.12■□□□□ 0.33
CLN3-201ENST00000333496 RIPOR3Q96MK2 946 aa17.12■□□□□ 0.33
CLN3-201ENST00000333496 NECTIN4Q96NY8 510 aa17.12■□□□□ 0.33
CLN3-201ENST00000333496 DPP7Q9UHL4 492 aa17.12■□□□□ 0.33
CLN3-201ENST00000333496 TIMM13Q9Y5L4 95 aaPredicted RBP17.12■□□□□ 0.33
CLN3-201ENST00000333496 GOLGA6L4A6NEF3 574 aa17.11■□□□□ 0.33
CLN3-201ENST00000333496 ZNF233A6NK53 670 aa17.11■□□□□ 0.33
CLN3-201ENST00000333496 ROR1Q01973 937 aa17.11■□□□□ 0.33
CLN3-201ENST00000333496 C12orf56Q8IXR9 622 aa17.11■□□□□ 0.33
CLN3-201ENST00000333496 RDH13Q8NBN7 331 aa17.11■□□□□ 0.33
CLN3-201ENST00000333496 APPL2Q8NEU8 664 aa17.11■□□□□ 0.33
CLN3-201ENST00000333496 CXorf38Q8TB03 319 aa17.11■□□□□ 0.33
CLN3-201ENST00000333496 KCTD10Q9H3F6 313 aa17.11■□□□□ 0.33
CLN3-201ENST00000333496 FBXL5Q9UKA1 691 aa17.11■□□□□ 0.33
CLN3-201ENST00000333496 PTPRJQ12913 1337 aa17.11■□□□□ 0.33
CLN3-201ENST00000333496 WDR27A2RRH5 827 aa17.1■□□□□ 0.33
CLN3-201ENST00000333496 ZMYND10O75800 440 aa17.1■□□□□ 0.33
CLN3-201ENST00000333496 SP100P23497 879 aaPredicted RBP17.1■□□□□ 0.33
CLN3-201ENST00000333496 CYP2J2P51589 502 aa17.1■□□□□ 0.33
CLN3-201ENST00000333496 TFAMQ00059 246 aaKnown RBP17.1■□□□□ 0.33
CLN3-201ENST00000333496 DSTYKQ6XUX3 929 aa17.1■□□□□ 0.33
CLN3-201ENST00000333496 HS2ST1Q7LGA3 356 aa17.1■□□□□ 0.33
CLN3-201ENST00000333496 C1orf127Q8N9H9 656 aa17.1■□□□□ 0.33
CLN3-201ENST00000333496 BORCS6Q96GS4 357 aa17.1■□□□□ 0.33
CLN3-201ENST00000333496 SENP8Q96LD8 212 aa17.1■□□□□ 0.33
CLN3-201ENST00000333496 RHOBTB2Q9BYZ6 727 aa17.1■□□□□ 0.33
CLN3-201ENST00000333496 ZDHHC7Q9NXF8 308 aa17.1■□□□□ 0.33
CLN3-201ENST00000333496 CGNQ9P2M7 1197 aaKnown RBP17.1■□□□□ 0.33
CLN3-201ENST00000333496 H7C4K7 107 aa17.1■□□□□ 0.33
CLN3-201ENST00000333496 TULP1O00294 542 aaPredicted RBP17.1■□□□□ 0.33
CLN3-201ENST00000333496 ABLIM3O94929 683 aa17.1■□□□□ 0.33
CLN3-201ENST00000333496 OAZ2O95190 189 aa17.1■□□□□ 0.33
CLN3-201ENST00000333496 YWHAHQ04917 246 aaPredicted RBP17.1■□□□□ 0.33
CLN3-201ENST00000333496 FAM160A1Q05DH4 1040 aa17.1■□□□□ 0.33
CLN3-201ENST00000333496 PNOCQ13519 176 aa17.1■□□□□ 0.33
CLN3-201ENST00000333496 GSE1Q14687 1217 aa17.1■□□□□ 0.33
CLN3-201ENST00000333496 KCNB1Q14721 858 aa17.1■□□□□ 0.33
CLN3-201ENST00000333496 SNRNP35Q16560 246 aaKnown RBP17.1■□□□□ 0.33
CLN3-201ENST00000333496 CTXN3Q4LDR2 81 aa17.1■□□□□ 0.33
CLN3-201ENST00000333496 LMBRD2Q68DH5 695 aaPredicted RBP17.1■□□□□ 0.33
CLN3-201ENST00000333496 ELMSAN1Q6PJG2 1045 aa17.1■□□□□ 0.33
CLN3-201ENST00000333496 RNF135Q8IUD6 432 aa17.1■□□□□ 0.33
CLN3-201ENST00000333496 XXYLT1Q8NBI6 393 aa17.1■□□□□ 0.33
CLN3-201ENST00000333496 ZNF461Q8TAF7 563 aa17.1■□□□□ 0.33
CLN3-201ENST00000333496 PRKD2Q9BZL6 878 aa17.1■□□□□ 0.33
CLN3-201ENST00000333496 EPHX3Q9H6B9 360 aa17.1■□□□□ 0.33
CLN3-201ENST00000333496 KIAA1586Q9HCI6 787 aa17.1■□□□□ 0.33
CLN3-201ENST00000333496 GADD45BO75293 160 aaPredicted RBP17.09■□□□□ 0.33
CLN3-201ENST00000333496 ITGB3P05106 788 aa17.09■□□□□ 0.33
CLN3-201ENST00000333496 C8AP07357 584 aa17.09■□□□□ 0.33
CLN3-201ENST00000333496 TAF6P49848 677 aa17.09■□□□□ 0.33
CLN3-201ENST00000333496 ZNF280DQ6N043 979 aa17.09■□□□□ 0.33
CLN3-201ENST00000333496 OR5B17Q8NGF7 314 aa17.09■□□□□ 0.33
CLN3-201ENST00000333496 CACTINQ8WUQ7 758 aaKnown RBP17.09■□□□□ 0.33
CLN3-201ENST00000333496 SMG7Q92540 1137 aaKnown RBP17.09■□□□□ 0.33
CLN3-201ENST00000333496 MTMR12Q9C0I1 747 aa17.09■□□□□ 0.33
CLN3-201ENST00000333496 GZF1Q9H116 711 aaPredicted RBP17.09■□□□□ 0.33
CLN3-201ENST00000333496 INTS13Q9NVM9 706 aa17.09■□□□□ 0.33
CLN3-201ENST00000333496 DMAC2Q9NW81 257 aa17.09■□□□□ 0.33
CLN3-201ENST00000333496 C2CD4DB7Z1M9 353 aa17.08■□□□□ 0.32
CLN3-201ENST00000333496 TYMPP19971 482 aa17.08■□□□□ 0.32
CLN3-201ENST00000333496 PAX3P23760 479 aa17.08■□□□□ 0.32
CLN3-201ENST00000333496 POLR2BP30876 1174 aaKnown RBP17.08■□□□□ 0.32
CLN3-201ENST00000333496 ARPP19P56211 112 aa17.08■□□□□ 0.32
CLN3-201ENST00000333496 CYP26C1Q6V0L0 522 aa17.08■□□□□ 0.32
CLN3-201ENST00000333496 SLC7A14Q8TBB6 771 aa17.08■□□□□ 0.32
CLN3-201ENST00000333496 WDR6Q9NNW5 1121 aaKnown RBP17.08■□□□□ 0.32
CLN3-201ENST00000333496 SIX4Q9UIU6 781 aa17.08■□□□□ 0.32
CLN3-201ENST00000333496 MAPK8IP1Q9UQF2 711 aa17.08■□□□□ 0.32
CLN3-201ENST00000333496 PI4K2BG5E9Z4 385 aa17.07■□□□□ 0.32
CLN3-201ENST00000333496 PDXKO00764 312 aa17.07■□□□□ 0.32
CLN3-201ENST00000333496 CYP11A1P05108 521 aa17.07■□□□□ 0.32
CLN3-201ENST00000333496 ATF2P15336 505 aa17.07■□□□□ 0.32
CLN3-201ENST00000333496 HOXA9P31269 272 aa17.07■□□□□ 0.32
CLN3-201ENST00000333496 CYP24A1Q07973 514 aa17.07■□□□□ 0.32
CLN3-201ENST00000333496 SURF1Q15526 300 aa17.07■□□□□ 0.32
CLN3-201ENST00000333496 UVSSAQ2YD98 709 aa17.07■□□□□ 0.32
CLN3-201ENST00000333496 PPM1LQ5SGD2 360 aa17.07■□□□□ 0.32
CLN3-201ENST00000333496 LIN9Q5TKA1 542 aa17.07■□□□□ 0.32
CLN3-201ENST00000333496 OVOS1Q6IE37 1185 aa17.07■□□□□ 0.32
CLN3-201ENST00000333496 CSGALNACT2Q8N6G5 542 aa17.07■□□□□ 0.32
CLN3-201ENST00000333496 TMEM174Q8WUU8 243 aa17.07■□□□□ 0.32
CLN3-201ENST00000333496 ERCC4Q92889 916 aaPredicted RBP17.07■□□□□ 0.32
CLN3-201ENST00000333496 CCDC47Q96A33 483 aaKnown RBP17.07■□□□□ 0.32
CLN3-201ENST00000333496 MFSD14AQ96MC6 490 aa17.07■□□□□ 0.32
CLN3-201ENST00000333496 TIGD1Q96MW7 591 aa17.07■□□□□ 0.32
CLN3-201ENST00000333496 AGAP1Q9UPQ3 857 aa17.07■□□□□ 0.32
CLN3-201ENST00000333496 KPNA7A9QM74 516 aa17.07■□□□□ 0.32
CLN3-201ENST00000333496 CYB561D2O14569 222 aa17.07■□□□□ 0.32
CLN3-201ENST00000333496 SEC24AO95486 1093 aa17.07■□□□□ 0.32
CLN3-201ENST00000333496 HNRNPA1P09651 372 aaKnown RBP eCLIP17.07■□□□□ 0.32
CLN3-201ENST00000333496 OR4Q2P0C623 313 aa17.07■□□□□ 0.32
CLN3-201ENST00000333496 TMEM191BP0C7N4 346 aa17.07■□□□□ 0.32
CLN3-201ENST00000333496 ODC1P11926 461 aa17.07■□□□□ 0.32
CLN3-201ENST00000333496 PSMD6Q15008 389 aa17.07■□□□□ 0.32
CLN3-201ENST00000333496 CCDC149Q6ZUS6 474 aa17.07■□□□□ 0.32
CLN3-201ENST00000333496 USP37Q86T82 979 aa17.07■□□□□ 0.32
CLN3-201ENST00000333496 SLC9A9Q8IVB4 645 aa17.07■□□□□ 0.32
CLN3-201ENST00000333496 SPATA20Q8TB22 786 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms