RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 NUP62CLQ9H1M0 184 aa4.19□□□□□ -1.74
HMGB1-201ENST00000326004 RNPEPQ9H4A4 650 aa4.19□□□□□ -1.74
HMGB1-201ENST00000326004 SLAMF7Q9NQ25 335 aa4.19□□□□□ -1.74
HMGB1-201ENST00000326004 CPA4Q9UI42 421 aa4.19□□□□□ -1.74
HMGB1-201ENST00000326004 TSC22D4Q9Y3Q8 395 aa4.19□□□□□ -1.74
HMGB1-201ENST00000326004 PRSS29PA6NIE9 313 aa4.18□□□□□ -1.74
HMGB1-201ENST00000326004 ZNF785A8K8V0 405 aa4.18□□□□□ -1.74
HMGB1-201ENST00000326004 MYO1FO00160 1098 aa4.18□□□□□ -1.74
HMGB1-201ENST00000326004 FOXN3O00409 490 aaPredicted RBP4.18□□□□□ -1.74
HMGB1-201ENST00000326004 MYF5P13349 255 aa4.18□□□□□ -1.74
HMGB1-201ENST00000326004 ZNF20P17024 532 aa4.18□□□□□ -1.74
HMGB1-201ENST00000326004 HDCP19113 662 aa4.18□□□□□ -1.74
HMGB1-201ENST00000326004 EN2P19622 333 aaPredicted RBP4.18□□□□□ -1.74
HMGB1-201ENST00000326004 SLC7A1P30825 629 aa4.18□□□□□ -1.74
HMGB1-201ENST00000326004 ADAM17P78536 824 aa4.18□□□□□ -1.74
HMGB1-201ENST00000326004 MXRA7P84157 204 aa4.18□□□□□ -1.74
HMGB1-201ENST00000326004 EXOSC9Q06265 439 aaKnown RBP4.18□□□□□ -1.74
HMGB1-201ENST00000326004 PIGFQ07326 219 aa4.18□□□□□ -1.74
HMGB1-201ENST00000326004 PICALMQ13492 652 aa4.18□□□□□ -1.74
HMGB1-201ENST00000326004 HDAC1Q13547 482 aaPredicted RBP4.18□□□□□ -1.74
HMGB1-201ENST00000326004 RABL3Q5HYI8 236 aa4.18□□□□□ -1.74
HMGB1-201ENST00000326004 GDF7Q7Z4P5 450 aa4.18□□□□□ -1.74
HMGB1-201ENST00000326004 TMIEQ8NEW7 156 aa4.18□□□□□ -1.74
HMGB1-201ENST00000326004 OR6B3Q8NGW1 331 aa4.18□□□□□ -1.74
HMGB1-201ENST00000326004 KLHL32Q96NJ5 620 aa4.18□□□□□ -1.74
HMGB1-201ENST00000326004 MED15Q96RN5 788 aa4.18□□□□□ -1.74
HMGB1-201ENST00000326004 CNPPD1Q9BV87 410 aa4.18□□□□□ -1.74
HMGB1-201ENST00000326004 KRTAP3-1Q9BYR8 98 aa4.18□□□□□ -1.74
HMGB1-201ENST00000326004 ZNF703Q9H7S9 590 aaPredicted RBP4.18□□□□□ -1.74
HMGB1-201ENST00000326004 KLHL11Q9NVR0 708 aa4.18□□□□□ -1.74
HMGB1-201ENST00000326004 USP25Q9UHP3 1055 aa4.18□□□□□ -1.74
HMGB1-201ENST00000326004 SORCS3Q9UPU3 1222 aa4.18□□□□□ -1.74
HMGB1-201ENST00000326004 FAM50BQ9Y247 325 aa4.18□□□□□ -1.74
HMGB1-201ENST00000326004 CHST2Q9Y4C5 530 aa4.18□□□□□ -1.74
HMGB1-201ENST00000326004 GAGE12BA1L429 117 aa4.17□□□□□ -1.74
HMGB1-201ENST00000326004 GAGE12HA6NDE8 117 aa4.17□□□□□ -1.74
HMGB1-201ENST00000326004 APAF1O14727 1248 aa4.17□□□□□ -1.74
HMGB1-201ENST00000326004 PMM2O15305 246 aa4.17□□□□□ -1.74
HMGB1-201ENST00000326004 PQBP1O60828 265 aaKnown RBP4.17□□□□□ -1.74
HMGB1-201ENST00000326004 PPFIA4O75335 1185 aa4.17□□□□□ -1.74
HMGB1-201ENST00000326004 PRSS23O95084 383 aa4.17□□□□□ -1.74
HMGB1-201ENST00000326004 SCAF4O95104 1147 aaKnown RBP4.17□□□□□ -1.74
HMGB1-201ENST00000326004 KITP10721 976 aa4.17□□□□□ -1.74
HMGB1-201ENST00000326004 PHKA1P46020 1223 aa4.17□□□□□ -1.74
HMGB1-201ENST00000326004 ZNF135P52742 658 aaPredicted RBP4.17□□□□□ -1.74
HMGB1-201ENST00000326004 ARFIP2P53365 341 aa4.17□□□□□ -1.74
HMGB1-201ENST00000326004 RNASE9P60153 205 aaKnown RBP4.17□□□□□ -1.74
HMGB1-201ENST00000326004 PSMC1P62191 440 aaKnown RBP4.17□□□□□ -1.74
HMGB1-201ENST00000326004 POU6F2P78424 691 aaPredicted RBP4.17□□□□□ -1.74
HMGB1-201ENST00000326004 SLFN5Q08AF3 891 aa4.17□□□□□ -1.74
HMGB1-201ENST00000326004 ZNF844Q08AG5 666 aa4.17□□□□□ -1.74
HMGB1-201ENST00000326004 TCF15Q12870 199 aa4.17□□□□□ -1.74
HMGB1-201ENST00000326004 TOB2Q14106 344 aaPredicted RBP4.17□□□□□ -1.74
HMGB1-201ENST00000326004 NOMO2Q5JPE7 1267 aa4.17□□□□□ -1.74
HMGB1-201ENST00000326004 TSHZ3Q63HK5 1081 aa4.17□□□□□ -1.74
HMGB1-201ENST00000326004 ZNF783Q6ZMS7 281 aa4.17□□□□□ -1.74
HMGB1-201ENST00000326004 PALM2Q8IXS6 379 aa4.17□□□□□ -1.74
HMGB1-201ENST00000326004 SLC17A8Q8NDX2 589 aa4.17□□□□□ -1.74
HMGB1-201ENST00000326004 OR56A1Q8NGH5 318 aa4.17□□□□□ -1.74
HMGB1-201ENST00000326004 NEU1Q99519 415 aa4.17□□□□□ -1.74
HMGB1-201ENST00000326004 SLC46A2Q9BY10 475 aa4.17□□□□□ -1.74
HMGB1-201ENST00000326004 DPH1Q9BZG8 443 aa4.17□□□□□ -1.74
HMGB1-201ENST00000326004 IMPG2Q9BZV3 1241 aa4.17□□□□□ -1.74
HMGB1-201ENST00000326004 TINAGL1Q9GZM7 467 aaPredicted RBP4.17□□□□□ -1.74
HMGB1-201ENST00000326004 KIAA1586Q9HCI6 787 aa4.17□□□□□ -1.74
HMGB1-201ENST00000326004 PARPBPQ9NWS1 579 aa4.17□□□□□ -1.74
HMGB1-201ENST00000326004 TRPM5Q9NZQ8 1165 aa4.17□□□□□ -1.74
HMGB1-201ENST00000326004 CAMSAP3Q9P1Y5 1249 aaPredicted RBP4.17□□□□□ -1.74
HMGB1-201ENST00000326004 SLC45A2Q9UMX9 530 aa4.17□□□□□ -1.74
HMGB1-201ENST00000326004 NEU2Q9Y3R4 380 aa4.17□□□□□ -1.74
HMGB1-201ENST00000326004 USP15Q9Y4E8 981 aaPredicted RBP4.17□□□□□ -1.74
HMGB1-201ENST00000326004 PLEKHM1Q9Y4G2 1056 aa4.17□□□□□ -1.74
HMGB1-201ENST00000326004 PCDHGB6Q9Y5F9 930 aa4.17□□□□□ -1.74
HMGB1-201ENST00000326004 A0A1B0GTW7 788 aa4.16□□□□□ -1.74
HMGB1-201ENST00000326004 RNASET2O00584 256 aaKnown RBP4.16□□□□□ -1.74
HMGB1-201ENST00000326004 TBX3O15119 743 aa4.16□□□□□ -1.74
HMGB1-201ENST00000326004 ZNF185O15231 689 aa4.16□□□□□ -1.74
HMGB1-201ENST00000326004 RPS6KA4O75676 772 aa4.16□□□□□ -1.74
HMGB1-201ENST00000326004 PEX11BO96011 259 aa4.16□□□□□ -1.74
HMGB1-201ENST00000326004 HLA-DOAP06340 250 aa4.16□□□□□ -1.74
HMGB1-201ENST00000326004 FCER1AP12319 257 aa4.16□□□□□ -1.74
HMGB1-201ENST00000326004 BRAFP15056 766 aa4.16□□□□□ -1.74
HMGB1-201ENST00000326004 IFIT5Q13325 482 aaKnown RBP4.16□□□□□ -1.74
HMGB1-201ENST00000326004 UBE4AQ14139 1066 aa4.16□□□□□ -1.74
HMGB1-201ENST00000326004 CDSNQ15517 529 aa4.16□□□□□ -1.74
HMGB1-201ENST00000326004 CNGA2Q16280 664 aa4.16□□□□□ -1.74
HMGB1-201ENST00000326004 PDCD4Q53EL6 469 aaKnown RBP4.16□□□□□ -1.74
HMGB1-201ENST00000326004 SLC44A4Q53GD3 710 aa4.16□□□□□ -1.74
HMGB1-201ENST00000326004 USP39Q53GS9 565 aaKnown RBP4.16□□□□□ -1.74
HMGB1-201ENST00000326004 ARMC6Q6NXE6 501 aa4.16□□□□□ -1.74
HMGB1-201ENST00000326004 FOXR2Q6PJQ5 311 aa4.16□□□□□ -1.74
HMGB1-201ENST00000326004 USP37Q86T82 979 aa4.16□□□□□ -1.74
HMGB1-201ENST00000326004 COL23A1Q86Y22 540 aaPredicted RBP4.16□□□□□ -1.74
HMGB1-201ENST00000326004 C1orf210Q8IVY1 113 aa4.16□□□□□ -1.74
HMGB1-201ENST00000326004 CFAP52Q8N1V2 620 aa4.16□□□□□ -1.74
HMGB1-201ENST00000326004 CELF5Q8N6W0 485 aaKnown RBP4.16□□□□□ -1.74
HMGB1-201ENST00000326004 PDPRQ8NCN5 879 aa4.16□□□□□ -1.74
HMGB1-201ENST00000326004 SVIPQ8NHG7 77 aa4.16□□□□□ -1.74
HMGB1-201ENST00000326004 IL17DQ8TAD2 202 aa4.16□□□□□ -1.74
HMGB1-201ENST00000326004 CPT1CQ8TCG5 803 aa4.16□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms