RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 MRPL10Q7Z7H8 261 aaKnown RBP10.75□□□□□ -0.69
HMGB3-201ENST00000325307 RTN4RL1Q86UN2 441 aaPredicted RBP10.75□□□□□ -0.69
HMGB3-201ENST00000325307 FMNL3Q8IVF7 1028 aa10.75□□□□□ -0.69
HMGB3-201ENST00000325307 LRRN4CLQ8ND94 238 aa10.75□□□□□ -0.69
HMGB3-201ENST00000325307 DESI2Q9BSY9 194 aa10.75□□□□□ -0.69
HMGB3-201ENST00000325307 GOLGA2P5Q9HBQ8 144 aa10.75□□□□□ -0.69
HMGB3-201ENST00000325307 AIPL1Q9NZN9 384 aa10.75□□□□□ -0.69
HMGB3-201ENST00000325307 POMCP01189 267 aa10.75□□□□□ -0.69
HMGB3-201ENST00000325307 THP07101 528 aa10.75□□□□□ -0.69
HMGB3-201ENST00000325307 CD58P19256 250 aa10.75□□□□□ -0.69
HMGB3-201ENST00000325307 HNRNPH3P31942 346 aaKnown RBP10.75□□□□□ -0.69
HMGB3-201ENST00000325307 CYLC1P35663 651 aaPredicted RBP10.75□□□□□ -0.69
HMGB3-201ENST00000325307 SYT10Q6XYQ8 523 aa10.75□□□□□ -0.69
HMGB3-201ENST00000325307 APBB2Q92870 758 aa10.75□□□□□ -0.69
HMGB3-201ENST00000325307 MMS19Q96T76 1030 aa10.75□□□□□ -0.69
HMGB3-201ENST00000325307 TSPYL2Q9H2G4 693 aaPredicted RBP10.75□□□□□ -0.69
HMGB3-201ENST00000325307 SEPT11Q9NVA2 429 aaKnown RBP10.75□□□□□ -0.69
HMGB3-201ENST00000325307 SLC38A7Q9NVC3 462 aa10.75□□□□□ -0.69
HMGB3-201ENST00000325307 LRFN2Q9ULH4 789 aa10.75□□□□□ -0.69
HMGB3-201ENST00000325307 C9IYK1 514 aa10.75□□□□□ -0.69
HMGB3-201ENST00000325307 PTGESO14684 152 aa10.75□□□□□ -0.69
HMGB3-201ENST00000325307 P4HA1P13674 534 aa10.75□□□□□ -0.69
HMGB3-201ENST00000325307 ATF7P17544 494 aaPredicted RBP10.75□□□□□ -0.69
HMGB3-201ENST00000325307 TNNC1P63316 161 aa10.75□□□□□ -0.69
HMGB3-201ENST00000325307 GPNMBQ14956 572 aa10.75□□□□□ -0.69
HMGB3-201ENST00000325307 GLB1LQ6UWU2 654 aa10.75□□□□□ -0.69
HMGB3-201ENST00000325307 LINC01599Q8WXQ3 324 aa10.75□□□□□ -0.69
HMGB3-201ENST00000325307 XYLT2Q9H1B5 865 aa10.75□□□□□ -0.69
HMGB3-201ENST00000325307 HAUS4Q9H6D7 363 aa10.75□□□□□ -0.69
HMGB3-201ENST00000325307 UBN1Q9NPG3 1134 aa10.75□□□□□ -0.69
HMGB3-201ENST00000325307 ARHGAP20Q9P2F6 1191 aa10.75□□□□□ -0.69
HMGB3-201ENST00000325307 POLIQ9UNA4 740 aa10.75□□□□□ -0.69
HMGB3-201ENST00000325307 PCDHB4Q9Y5E5 795 aa10.75□□□□□ -0.69
HMGB3-201ENST00000325307 CYP26A1O43174 497 aa10.74□□□□□ -0.69
HMGB3-201ENST00000325307 ATICP31939 592 aa10.74□□□□□ -0.69
HMGB3-201ENST00000325307 AFF1P51825 1210 aaKnown RBP10.74□□□□□ -0.69
HMGB3-201ENST00000325307 TAF4BQ92750 862 aa10.74□□□□□ -0.69
HMGB3-201ENST00000325307 TSPAN18Q96SJ8 248 aa10.74□□□□□ -0.69
HMGB3-201ENST00000325307 GPR88Q9GZN0 384 aa10.74□□□□□ -0.69
HMGB3-201ENST00000325307 ANK1P16157 1881 aa10.74□□□□□ -0.69
HMGB3-201ENST00000325307 WEE2P0C1S8 567 aa10.74□□□□□ -0.69
HMGB3-201ENST00000325307 ZBTB6Q15916 424 aa10.74□□□□□ -0.69
HMGB3-201ENST00000325307 XKR4Q5GH76 650 aa10.74□□□□□ -0.69
HMGB3-201ENST00000325307 C9orf57Q5W0N0 161 aa10.74□□□□□ -0.69
HMGB3-201ENST00000325307 TMEM270Q6UE05 265 aa10.74□□□□□ -0.69
HMGB3-201ENST00000325307 VPS36Q86VN1 386 aa10.74□□□□□ -0.69
HMGB3-201ENST00000325307 ABI1Q8IZP0 508 aa10.74□□□□□ -0.69
HMGB3-201ENST00000325307 SHC3Q92529 594 aa10.74□□□□□ -0.69
HMGB3-201ENST00000325307 L2HGDHQ9H9P8 463 aa10.74□□□□□ -0.69
HMGB3-201ENST00000325307 PRKAG2Q9UGJ0 569 aa10.74□□□□□ -0.69
HMGB3-201ENST00000325307 PCDHB7Q9Y5E2 793 aa10.74□□□□□ -0.69
HMGB3-201ENST00000325307 BZW2Q9Y6E2 419 aaKnown RBP10.74□□□□□ -0.69
HMGB3-201ENST00000325307 EPN1Q9Y6I3 576 aaPredicted RBP10.74□□□□□ -0.69
HMGB3-201ENST00000325307 ENPP3O14638 875 aa10.74□□□□□ -0.69
HMGB3-201ENST00000325307 PPEF2O14830 753 aa10.74□□□□□ -0.69
HMGB3-201ENST00000325307 EOMESO95936 686 aa10.74□□□□□ -0.69
HMGB3-201ENST00000325307 CDK17Q00537 523 aa10.74□□□□□ -0.69
HMGB3-201ENST00000325307 PTK2Q05397 1052 aa10.74□□□□□ -0.69
HMGB3-201ENST00000325307 SOX4Q06945 474 aaPredicted RBP10.74□□□□□ -0.69
HMGB3-201ENST00000325307 SPA17Q15506 151 aa10.74□□□□□ -0.69
HMGB3-201ENST00000325307 IRF2BP2Q7Z5L9 587 aa10.74□□□□□ -0.69
HMGB3-201ENST00000325307 MIOSQ9NXC5 875 aa10.74□□□□□ -0.69
HMGB3-201ENST00000325307 PCDH10Q9P2E7 1040 aa10.74□□□□□ -0.69
HMGB3-201ENST00000325307 MKI67P46013 3256 aaKnown RBP10.73□□□□□ -0.69
HMGB3-201ENST00000325307 NDUFA10O95299 355 aa10.73□□□□□ -0.69
HMGB3-201ENST00000325307 FGFR1P11362 822 aa10.73□□□□□ -0.69
HMGB3-201ENST00000325307 TRIP11Q15643 1979 aa10.73□□□□□ -0.69
HMGB3-201ENST00000325307 HGSNATQ68CP4 663 aa10.73□□□□□ -0.69
HMGB3-201ENST00000325307 CCDC170Q8IYT3 715 aa10.73□□□□□ -0.69
HMGB3-201ENST00000325307 ACRBPQ8NEB7 543 aa10.73□□□□□ -0.69
HMGB3-201ENST00000325307 ZNF560Q96MR9 790 aa10.73□□□□□ -0.69
HMGB3-201ENST00000325307 PPP1R10Q96QC0 940 aaKnown RBP10.73□□□□□ -0.69
HMGB3-201ENST00000325307 CACNG4Q9UBN1 327 aa10.73□□□□□ -0.69
HMGB3-201ENST00000325307 PUF60Q9UHX1 559 aaKnown RBP10.73□□□□□ -0.69
HMGB3-201ENST00000325307 SNX9Q9Y5X1 595 aa10.73□□□□□ -0.69
HMGB3-201ENST00000325307 TRIM43BA6NCK2 446 aa10.73□□□□□ -0.69
HMGB3-201ENST00000325307 CASTOR2A6NHX0 329 aa10.73□□□□□ -0.69
HMGB3-201ENST00000325307 RAP1GAPP47736 663 aa10.73□□□□□ -0.69
HMGB3-201ENST00000325307 KIF11P52732 1056 aa10.73□□□□□ -0.69
HMGB3-201ENST00000325307 RNASELQ05823 741 aaKnown RBP10.73□□□□□ -0.69
HMGB3-201ENST00000325307 ZNF394Q53GI3 561 aa10.73□□□□□ -0.69
HMGB3-201ENST00000325307 ZNF598Q86UK7 904 aaKnown RBP10.73□□□□□ -0.69
HMGB3-201ENST00000325307 FAM71AQ8IYT1 594 aa10.73□□□□□ -0.69
HMGB3-201ENST00000325307 CXorf38Q8TB03 319 aa10.73□□□□□ -0.69
HMGB3-201ENST00000325307 URGCPQ8TCY9 931 aa10.73□□□□□ -0.69
HMGB3-201ENST00000325307 RABGGTAQ92696 567 aa10.73□□□□□ -0.69
HMGB3-201ENST00000325307 TRIM43Q96BQ3 446 aaPredicted RBP10.73□□□□□ -0.69
HMGB3-201ENST00000325307 ADAMTS1Q9UHI8 967 aa10.73□□□□□ -0.69
HMGB3-201ENST00000325307 TIMP1P01033 207 aa10.72□□□□□ -0.69
HMGB3-201ENST00000325307 CXCL10P02778 98 aa10.72□□□□□ -0.69
HMGB3-201ENST00000325307 CCDC175P0C221 793 aa10.72□□□□□ -0.69
HMGB3-201ENST00000325307 CYP3A5P20815 502 aa10.72□□□□□ -0.69
HMGB3-201ENST00000325307 YWHAEP62258 255 aaKnown RBP10.72□□□□□ -0.69
HMGB3-201ENST00000325307 ETF1P62495 437 aaKnown RBP10.72□□□□□ -0.69
HMGB3-201ENST00000325307 IKBKEQ14164 716 aa10.72□□□□□ -0.69
HMGB3-201ENST00000325307 GSTCDQ8NEC7 633 aa10.72□□□□□ -0.69
HMGB3-201ENST00000325307 WDR24Q96S15 920 aa10.72□□□□□ -0.69
HMGB3-201ENST00000325307 SMYD3Q9H7B4 428 aa10.72□□□□□ -0.69
HMGB3-201ENST00000325307 ACP6Q9NPH0 428 aa10.72□□□□□ -0.69
HMGB3-201ENST00000325307 CISHQ9NSE2 258 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms